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Cow genome map

           
Conread name:
           
rdbla0119_m12.y1
        

               
Conread position:
               
18-235
               

               
Cow position:
               
chr21:44732726-44732940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
93, 27
               

               
Conread position:
               
27-363
               

               
Cow position:
               
chr21:12354393-12354718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
82, 23
               

               
Conread position:
               
45-282
               

               
Cow position:
               
chr21:13090671-13090431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
13, 21
               

               
Conread position:
               
47-287
               

               
Cow position:
               
chr21:40820556-40820801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
8, 128
               

               
Conread position:
               
47-364
               

               
Cow position:
               
chr21:43388653-43388325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
62, 17
               

               
Conread position:
               
47-535
               

               
Cow position:
               
chr21:34023-33528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 15
               

               
Conread position:
               
47-535
               

               
Cow position:
               
chr21:13584762-13585251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
63, 18
               

               
Conread position:
               
48-348
               

               
Cow position:
               
chr21:44724082-44724373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
10, 95
               

               
Conread position:
               
50-400
               

               
Cow position:
               
chr21:15543947-15544280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
33, 96
               

               
Conread position:
               
51-246
               

               
Cow position:
               
chr21:3135581-3135776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 14
               

               
Conread position:
               
51-325
               

               
Cow position:
               
chr21:17403559-17403833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
49, 30
               

               
Conread position:
               
51-514
               

               
Cow position:
               
chr21:17559623-17560110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
11, 152
               

               
Conread position:
               
51-535
               

               
Cow position:
               
chr21:20160965-20160491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 21
               

               
Conread position:
               
52-400
               

               
Cow position:
               
chr21:8426730-8426379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 30
               

               
Conread position:
               
52-534
               

               
Cow position:
               
chr21:18289963-18289469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 28
               

               
Conread position:
               
52-534
               

               
Cow position:
               
chr21:23673031-23672552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
62, 20
               

               
Conread position:
               
52-535
               

               
Cow position:
               
chr21:27568870-27569351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 205
               

               
Conread position:
               
53-401
               

               
Cow position:
               
chr21:19703017-19702661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
56, 84
               

               
Conread position:
               
53-482
               

               
Cow position:
               
chr21:48233892-48234298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 26
               

               
Conread position:
               
53-533
               

               
Cow position:
               
chr21:27863232-27863710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 91
               

               
Conread position:
               
53-535
               

               
Cow position:
               
chr21:42501337-42500840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 19
               

               
Conread position:
               
54-285
               

               
Cow position:
               
chr21:15012717-15012493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
161, 95
               

               
Conread position:
               
54-453
               

               
Cow position:
               
chr21:19407288-19407700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
57, 18
               

               
Conread position:
               
54-535
               

               
Cow position:
               
chr21:3498778-3498305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
52, 27
               

               
Conread position:
               
55-235
               

               
Cow position:
               
chr21:45376231-45376052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
54, 10
               

               
Conread position:
               
55-299
               

               
Cow position:
               
chr21:26018666-26018419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 122
               

               
Conread position:
               
55-387
               

               
Cow position:
               
chr21:9505156-9504836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 141
               

               
Conread position:
               
55-412
               

               
Cow position:
               
chr21:47719019-47719373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
55-431
               

               
Cow position:
               
chr21:45906336-45906714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 108
               

               
Conread position:
               
55-508
               

               
Cow position:
               
chr21:15584136-15584575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
35, 88
               

               
Conread position:
               
55-530
               

               
Cow position:
               
chr21:13047906-13048385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
56-253
               

               
Cow position:
               
chr21:18450040-18449839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
21, 145
               

               
Conread position:
               
56-348
               

               
Cow position:
               
chr21:7768710-7768426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
159, 53
               

               
Conread position:
               
56-364
               

               
Cow position:
               
chr21:38720533-38720226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
56, 73
               

               
Conread position:
               
56-375
               

               
Cow position:
               
chr21:10656820-10657139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
55, 23
               

               
Conread position:
               
56-381
               

               
Cow position:
               
chr21:742561-742245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 100
               

               
Conread position:
               
56-396
               

               
Cow position:
               
chr21:13656350-13656687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
53, 129
               

               
Conread position:
               
56-530
               

               
Cow position:
               
chr21:22861284-22860814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 101
               

               
Conread position:
               
56-535
               

               
Cow position:
               
chr21:3763470-3763930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
132, 24
               

               
Conread position:
               
56-535
               

               
Cow position:
               
chr21:10070642-10071122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
48, 23
               

               
Conread position:
               
56-535
               

               
Cow position:
               
chr21:38918483-38918022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
51, 23
               

               
Conread position:
               
57-314
               

               
Cow position:
               
chr21:48334503-48334764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
54, 25
               

               
Conread position:
               
57-319
               

               
Cow position:
               
chr21:39319124-39319388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
22, 8
               

               
Conread position:
               
57-370
               

               
Cow position:
               
chr21:36695810-36696122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
130, 23
               

               
Conread position:
               
57-405
               

               
Cow position:
               
chr21:12339901-12339572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
21, 93
               

               
Conread position:
               
57-490
               

               
Cow position:
               
chr21:44963078-44962647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
49, 24
               

               
Conread position:
               
57-535
               

               
Cow position:
               
chr21:11739833-11740325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 78
               

               
Conread position:
               
58-302
               

               
Cow position:
               
chr21:13580697-13580449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
19, 6
               

               
Conread position:
               
58-530
               

               
Cow position:
               
chr21:41156154-41155674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 122
               

               
Conread position:
               
59-279
               

               
Cow position:
               
chr21:30658143-30657930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
6, 81
               

               
Conread position:
               
59-515
               

               
Cow position:
               
chr21:23535993-23535544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 23
               

               
Conread position:
               
60-250
               

               
Cow position:
               
chr21:1464624-1464432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 99
               

               
Conread position:
               
60-296
               

               
Cow position:
               
chr21:13674370-13674609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
50, 134
               

               
Conread position:
               
60-444
               

               
Cow position:
               
chr21:16915060-16914669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 5
               

               
Conread position:
               
61-440
               

               
Cow position:
               
chr21:10817314-10816920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
15, 137
               

               
Conread position:
               
61-445
               

               
Cow position:
               
chr21:23979898-23980289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 136
               

               
Conread position:
               
62-215
               

               
Cow position:
               
chr21:37479312-37479468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 108
               

               
Conread position:
               
62-256
               

               
Cow position:
               
chr21:16797130-16796934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
79, 105
               

               
Conread position:
               
62-303
               

               
Cow position:
               
chr21:39394028-39393784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
14, 86
               

               
Conread position:
               
62-329
               

               
Cow position:
               
chr21:36682604-36682332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
108, 49
               

               
Conread position:
               
62-365
               

               
Cow position:
               
chr21:14027341-14027027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
49, 17
               

               
Conread position:
               
62-417
               

               
Cow position:
               
chr21:47713731-47714086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
62-435
               

               
Cow position:
               
chr21:33580690-33580315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
15, 68
               

               
Conread position:
               
62-462
               

               
Cow position:
               
chr21:30222618-30222217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 19
               

               
Conread position:
               
62-491
               

               
Cow position:
               
chr21:11027079-11027506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
15, 69
               

               
Conread position:
               
62-502
               

               
Cow position:
               
chr21:41590288-41590716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 100
               

               
Conread position:
               
62-533
               

               
Cow position:
               
chr21:6834329-6833861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 119
               

               
Conread position:
               
62-533
               

               
Cow position:
               
chr21:33982536-33983001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 91
               

               
Conread position:
               
62-535
               

               
Cow position:
               
chr21:82336-81877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 20
               

               
Conread position:
               
62-535
               

               
Cow position:
               
chr21:9416519-9416049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 44
               

               
Conread position:
               
62-535
               

               
Cow position:
               
chr21:13034759-13035242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
62-535
               

               
Cow position:
               
chr21:38901041-38900580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 91
               

               
Conread position:
               
62-535
               

               
Cow position:
               
chr21:44565451-44565895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
42, 81
               

               
Conread position:
               
63-340
               

               
Cow position:
               
chr21:46599635-46599359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
42, 108
               

               
Conread position:
               
64-286
               

               
Cow position:
               
chr21:11182824-11182606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
45, 18
               

               
Conread position:
               
64-388
               

               
Cow position:
               
chr21:41522136-41522457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 46
               

               
Conread position:
               
64-407
               

               
Cow position:
               
chr21:44214387-44214055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 75
               

               
Conread position:
               
64-411
               

               
Cow position:
               
chr21:16570169-16569828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 48
               

               
Conread position:
               
64-529
               

               
Cow position:
               
chr21:37706137-37706594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
47, 15
               

               
Conread position:
               
65-337
               

               
Cow position:
               
chr21:19868687-19868954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
44, 78
               

               
Conread position:
               
65-348
               

               
Cow position:
               
chr21:30980284-30980586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
46, 191
               

               
Conread position:
               
65-361
               

               
Cow position:
               
chr21:71861-71563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 81
               

               
Conread position:
               
65-450
               

               
Cow position:
               
chr21:27810665-27810296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 16
               

               
Conread position:
               
65-514
               

               
Cow position:
               
chr21:47861456-47861023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
46, 79
               

               
Conread position:
               
65-524
               

               
Cow position:
               
chr21:44825600-44826061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 69
               

               
Conread position:
               
65-530
               

               
Cow position:
               
chr21:14452508-14452042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 47
               

               
Conread position:
               
65-535
               

               
Cow position:
               
chr21:9311330-9310850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
47, 130
               

               
Conread position:
               
65-535
               

               
Cow position:
               
chr21:12154400-12153940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 79
               

               
Conread position:
               
65-535
               

               
Cow position:
               
chr21:20262074-20262527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 16
               

               
Conread position:
               
65-535
               

               
Cow position:
               
chr21:27229531-27229988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 14
               

               
Conread position:
               
65-535
               

               
Cow position:
               
chr21:34654345-34653891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 81
               

               
Conread position:
               
66-286
               

               
Cow position:
               
chr21:25012348-25012135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
48, 12
               

               
Conread position:
               
66-402
               

               
Cow position:
               
chr21:41140441-41140782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
43, 111
               

               
Conread position:
               
66-454
               

               
Cow position:
               
chr21:17638167-17637786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
45, 15
               

               
Conread position:
               
66-461
               

               
Cow position:
               
chr21:12461695-12462094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 81
               

               
Conread position:
               
66-525
               

               
Cow position:
               
chr21:30592040-30592485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 75
               

               
Conread position:
               
66-535
               

               
Cow position:
               
chr21:15545088-15545556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
46, 120
               

               
Conread position:
               
67-306
               

               
Cow position:
               
chr21:20163979-20163742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
31, 14
               

               
Conread position:
               
67-357
               

               
Cow position:
               
chr21:46132865-46132559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
40, 246
               

               
Conread position:
               
67-525
               

               
Cow position:
               
chr21:40786951-40786487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 14
               

               
Conread position:
               
67-534
               

               
Cow position:
               
chr21:40899612-40899144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 14
               

               
Conread position:
               
68-268
               

               
Cow position:
               
chr21:13883747-13883552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
140, 13
               

               
Conread position:
               
68-319
               

               
Cow position:
               
chr21:6851437-6851192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
46, 78
               

               
Conread position:
               
68-522
               

               
Cow position:
               
chr21:17184190-17183741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 72
               

               
Conread position:
               
69-514
               

               
Cow position:
               
chr21:29213887-29214320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
69-520
               

               
Cow position:
               
chr21:643590-643155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 19
               

               
Conread position:
               
69-535
               

               
Cow position:
               
chr21:641854-641392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 13
               

               
Conread position:
               
70-235
               

               
Cow position:
               
chr21:16119891-16120057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
13, 76
               

               
Conread position:
               
70-354
               

               
Cow position:
               
chr21:13589030-13588751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
41, 11
               

               
Conread position:
               
71-337
               

               
Cow position:
               
chr21:12104622-12104367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
43, 75
               

               
Conread position:
               
71-533
               

               
Cow position:
               
chr21:32559101-32559545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 75
               

               
Conread position:
               
72-291
               

               
Cow position:
               
chr21:30243418-30243633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
20, 75
               

               
Conread position:
               
73-244
               

               
Cow position:
               
chr21:39845869-39845688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
73-281
               

               
Cow position:
               
chr21:8506277-8506488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
13, 94
               

               
Conread position:
               
73-281
               

               
Cow position:
               
chr21:8509165-8509376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
13, 94
               

               
Conread position:
               
73-395
               

               
Cow position:
               
chr21:868651-868982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 264
               

               
Conread position:
               
73-403
               

               
Cow position:
               
chr21:11779271-11779595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
38, 190
               

               
Conread position:
               
73-430
               

               
Cow position:
               
chr21:6998208-6997846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
36, 65
               

               
Conread position:
               
73-499
               

               
Cow position:
               
chr21:20260030-20260477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 414
               

               
Conread position:
               
73-530
               

               
Cow position:
               
chr21:47464852-47465309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 90
               

               
Conread position:
               
73-533
               

               
Cow position:
               
chr21:5427194-5426755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
37, 86
               

               
Conread position:
               
73-533
               

               
Cow position:
               
chr21:36763329-36762862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
39, 73
               

               
Conread position:
               
73-535
               

               
Cow position:
               
chr21:32339478-32339928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 65
               

               
Conread position:
               
73-535
               

               
Cow position:
               
chr21:39888459-39888937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 263
               

               
Conread position:
               
74-318
               

               
Cow position:
               
chr21:21616042-21615805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
143, 69
               

               
Conread position:
               
74-535
               

               
Cow position:
               
chr21:37480230-37479763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 72
               

               
Conread position:
               
75-465
               

               
Cow position:
               
chr21:30835631-30835237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 125
               

               
Conread position:
               
75-501
               

               
Cow position:
               
chr21:13840593-13840164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
36, 120
               

               
Conread position:
               
75-535
               

               
Cow position:
               
chr21:44251576-44252019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
33, 94
               

               
Conread position:
               
76-535
               

               
Cow position:
               
chr21:3585100-3585549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 125
               

               
Conread position:
               
78-535
               

               
Cow position:
               
chr21:2679809-2679359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 92
               

               
Conread position:
               
78-535
               

               
Cow position:
               
chr21:8351031-8351497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 67
               

               
Conread position:
               
79-427
               

               
Cow position:
               
chr21:22209982-22210333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
25, 78
               

               
Conread position:
               
79-524
               

               
Cow position:
               
chr21:30231435-30231885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 115
               

               
Conread position:
               
81-312
               

               
Cow position:
               
chr21:22851174-22850949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
30, 63
               

               
Conread position:
               
81-312
               

               
Cow position:
               
chr21:24875611-24875380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
30, 65
               

               
Conread position:
               
81-316
               

               
Cow position:
               
chr21:17252718-17252952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
30, 91
               

               
Conread position:
               
81-375
               

               
Cow position:
               
chr21:674927-674655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
30, 65
               

               
Conread position:
               
81-456
               

               
Cow position:
               
chr21:17874931-17875310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
30, 60
               

               
Conread position:
               
81-523
               

               
Cow position:
               
chr21:802064-802475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 66
               

               
Conread position:
               
81-535
               

               
Cow position:
               
chr21:42135360-42135817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 74
               

               
Conread position:
               
82-533
               

               
Cow position:
               
chr21:24858574-24858120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 66
               

               
Conread position:
               
84-486
               

               
Cow position:
               
chr21:42007212-42007603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
86, 32
               

               
Conread position:
               
85-382
               

               
Cow position:
               
chr21:13842748-13842444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
26, 111
               

               
Conread position:
               
85-535
               

               
Cow position:
               
chr21:11644711-11645162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 61
               

               
Conread position:
               
88-530
               

               
Cow position:
               
chr21:29069071-29069517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 375
               

               
Conread position:
               
88-535
               

               
Cow position:
               
chr21:7673365-7672940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 58
               

               
Conread position:
               
88-535
               

               
Cow position:
               
chr21:18318965-18318533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
23, 107
               

               
Conread position:
               
89-337
               

               
Cow position:
               
chr21:41287545-41287792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
22, 57
               

               
Conread position:
               
89-343
               

               
Cow position:
               
chr21:19240627-19240880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
126, 27
               

               
Conread position:
               
91-453
               

               
Cow position:
               
chr21:10561336-10561695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 55
               

               
Conread position:
               
96-535
               

               
Cow position:
               
chr21:19767108-19766661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
13, 93
               

               
Conread position:
               
103-437
               

               
Cow position:
               
chr21:21633068-21633401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
189, 86
               

               
Conread position:
               
104-355
               

               
Cow position:
               
chr21:828977-829227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
108, 37
               

               
Conread position:
               
104-454
               

               
Cow position:
               
chr21:7785453-7785113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
72, 86
               

               
Conread position:
               
121-514
               

               
Cow position:
               
chr21:27145772-27146163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
21, 87
               

               
Conread position:
               
121-527
               

               
Cow position:
               
chr21:9990727-9990329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 47
               

               
Conread position:
               
131-535
               

               
Cow position:
               
chr21:36297702-36297286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 37
               

               
Conread position:
               
133-375
               

               
Cow position:
               
chr21:29014351-29014597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
140-411
               

               
Cow position:
               
chr21:19674006-19673731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
42, 52
               

               
Conread position:
               
141-508
               

               
Cow position:
               
chr21:27624898-27624547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 153
               

               
Conread position:
               
141-525
               

               
Cow position:
               
chr21:7581704-7582092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 162
               

               
Conread position:
               
141-527
               

               
Cow position:
               
chr21:5392336-5392727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 263
               

               
Conread position:
               
143-330
               

               
Cow position:
               
chr21:19359977-19360167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
27, 175
               

               
Conread position:
               
143-450
               

               
Cow position:
               
chr21:35437294-35437580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
74, 25
               

               
Conread position:
               
143-530
               

               
Cow position:
               
chr21:46264367-46263988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 123
               

               
Conread position:
               
145-371
               

               
Cow position:
               
chr21:734784-734563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
72, 79
               

               
Conread position:
               
151-415
               

               
Cow position:
               
chr21:45262621-45262889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 6
               

               
Conread position:
               
154-535
               

               
Cow position:
               
chr21:724695-725085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
155-297
               

               
Cow position:
               
chr21:5341909-5342052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
155-440
               

               
Cow position:
               
chr21:22465375-22465095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
62, 29
               

               
Conread position:
               
161-402
               

               
Cow position:
               
chr21:2809983-2810226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
56, 77
               

               
Conread position:
               
166-479
               

               
Cow position:
               
chr21:12723325-12723020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 71
               

               
Conread position:
               
167-305
               

               
Cow position:
               
chr21:46451781-46451918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
51, 108
               

               
Conread position:
               
167-364
               

               
Cow position:
               
chr21:10538082-10538276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
50, 128
               

               
Conread position:
               
167-535
               

               
Cow position:
               
chr21:42384681-42384312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 131
               

               
Conread position:
               
168-524
               

               
Cow position:
               
chr21:15911572-15911218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 74
               

               
Conread position:
               
168-535
               

               
Cow position:
               
chr21:4399975-4399606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 112
               

               
Conread position:
               
168-535
               

               
Cow position:
               
chr21:38121273-38120914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 248
               

               
Conread position:
               
169-348
               

               
Cow position:
               
chr21:41046977-41046796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
46, 79
               

               
Conread position:
               
169-397
               

               
Cow position:
               
chr21:297925-297694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
49, 148
               

               
Conread position:
               
169-526
               

               
Cow position:
               
chr21:28191203-28190844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 90
               

               
Conread position:
               
169-535
               

               
Cow position:
               
chr21:21077480-21077136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 67
               

               
Conread position:
               
169-535
               

               
Cow position:
               
chr21:25764806-25764442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 163
               

               
Conread position:
               
169-535
               

               
Cow position:
               
chr21:29485149-29484791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 67
               

               
Conread position:
               
169-535
               

               
Cow position:
               
chr21:33350912-33350549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 120
               

               
Conread position:
               
170-453
               

               
Cow position:
               
chr21:35354703-35354419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 117
               

               
Conread position:
               
171-378
               

               
Cow position:
               
chr21:471843-471637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
149, 28
               

               
Conread position:
               
171-514
               

               
Cow position:
               
chr21:26245083-26244756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
46, 127
               

               
Conread position:
               
171-535
               

               
Cow position:
               
chr21:42841428-42841784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
46, 202
               

               
Conread position:
               
172-356
               

               
Cow position:
               
chr21:47160386-47160199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
45, 160
               

               
Conread position:
               
172-530
               

               
Cow position:
               
chr21:33264012-33263660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 173
               

               
Conread position:
               
172-532
               

               
Cow position:
               
chr21:12801579-12801934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 183
               

               
Conread position:
               
172-535
               

               
Cow position:
               
chr21:24698648-24698296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
13, 28
               

               
Conread position:
               
172-535
               

               
Cow position:
               
chr21:28442900-28442551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 26
               

               
Conread position:
               
172-535
               

               
Cow position:
               
chr21:31662635-31662267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
45, 280
               

               
Conread position:
               
177-363
               

               
Cow position:
               
chr21:40192141-40192326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
38, 103
               

               
Conread position:
               
177-496
               

               
Cow position:
               
chr21:45920895-45921212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 86
               

               
Conread position:
               
177-535
               

               
Cow position:
               
chr21:33210351-33210005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 122
               

               
Conread position:
               
178-347
               

               
Cow position:
               
chr21:20183233-20183064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
39, 120
               

               
Conread position:
               
179-444
               

               
Cow position:
               
chr21:20418521-20418791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
184-529
               

               
Cow position:
               
chr21:18844856-18845202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 273
               

               
Conread position:
               
190-535
               

               
Cow position:
               
chr21:41878619-41878283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
111, 28
               

               
Conread position:
               
190-535
               

               
Cow position:
               
chr21:42540072-42540413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 153
               

               
Conread position:
               
196-525
               

               
Cow position:
               
chr21:30606942-30607271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 193
               

               
Conread position:
               
198-529
               

               
Cow position:
               
chr21:15611282-15610967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
18, 56
               

               
Conread position:
               
206-488
               

               
Cow position:
               
chr21:11360169-11359892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
257, 88
               

               
Conread position:
               
206-534
               

               
Cow position:
               
chr21:10601241-10601560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 161
               

               
Conread position:
               
206-535
               

               
Cow position:
               
chr21:44515398-44515081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 158
               

               
Conread position:
               
207-530
               

               
Cow position:
               
chr21:18941701-18942017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
11, 86
               

               
Conread position:
               
208-525
               

               
Cow position:
               
chr21:46144091-46143760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
11, 226
               

               
Conread position:
               
210-435
               

               
Cow position:
               
chr21:17009111-17008884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
8, 162
               

               
Conread position:
               
210-524
               

               
Cow position:
               
chr21:13488657-13488337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 217
               

               
Conread position:
               
212-535
               

               
Cow position:
               
chr21:5153748-5153424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
125, 83
               

               
Conread position:
               
214-478
               

               
Cow position:
               
chr21:17856669-17856408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 167
               

               
Conread position:
               
215-535
               

               
Cow position:
               
chr21:2367456-2367147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 81
               

               
Conread position:
               
215-535
               

               
Cow position:
               
chr21:24888123-24887816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
110, 77
               

               
Conread position:
               
216-530
               

               
Cow position:
               
chr21:47729898-47730207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 29
               

               
Conread position:
               
220-535
               

               
Cow position:
               
chr21:23149902-23150212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 56
               

               
Conread position:
               
223-533
               

               
Cow position:
               
chr21:24607502-24607194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
98, 113
               

               
Conread position:
               
223-534
               

               
Cow position:
               
chr21:426923-426598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
89, 256
               

               
Conread position:
               
229-480
               

               
Cow position:
               
chr21:44733063-44733299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
87, 70
               

               
Conread position:
               
231-535
               

               
Cow position:
               
chr21:2904370-2904655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
82, 55
               

               
Conread position:
               
244-445
               

               
Cow position:
               
chr21:18041752-18041955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
260-535
               

               
Cow position:
               
chr21:12960819-12961092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 37
               
Show alignments to all cow chromosomes.