Cow genome map

Conread name: rdbla0119_m12.y1

Conread position: 14-523
Cow position: chrX:11633968-11633460 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 27

Conread position: 27-396
Cow position: chrX:38560828-38560462 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 260
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 25, 56

Conread position: 28-472
Cow position: chrX:22921599-22921147 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 295
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 48, 150

Conread position: 32-535
Cow position: chrX:9634920-9635411 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 10

Conread position: 37-532
Cow position: chrX:21642213-21642705 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 37

Conread position: 39-535
Cow position: chrX:34532774-34532301 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 34

Conread position: 46-239
Cow position: chrX:41215580-41215385 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 65, 35

Conread position: 46-512
Cow position: chrX:46588083-46587611 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 93

Conread position: 47-535
Cow position: chrX:11656332-11655856 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 15

Conread position: 47-535
Cow position: chrX:44055061-44054571 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 148

Conread position: 48-268
Cow position: chrX:18439252-18439030 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 153
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 63, 33

Conread position: 49-240
Cow position: chrX:4750085-4750270 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 66, 23

Conread position: 49-307
Cow position: chrX:2936209-2935952 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 16

Conread position: 49-535
Cow position: chrX:6544499-6544026 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 23

Conread position: 50-300
Cow position: chrX:17524131-17524382 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 169
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 8, 29

Conread position: 50-454
Cow position: chrX:5118247-5118655 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 10

Conread position: 51-302
Cow position: chrX:4327927-4328183 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 169
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 31, 138

Conread position: 51-332
Cow position: chrX:41941877-41941597 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 197
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 20, 32

Conread position: 51-365
Cow position: chrX:8493319-8493013 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 213
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 60, 14

Conread position: 51-412
Cow position: chrX:30337701-30338053 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 13

Conread position: 53-245
Cow position: chrX:17525625-17525810 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 160, 88

Conread position: 53-305
Cow position: chrX:42480077-42479832 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 182
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 52, 28

Conread position: 53-526
Cow position: chrX:48237068-48236590 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 321
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 47, 36

Conread position: 54-246
Cow position: chrX:41011142-41010954 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 24, 89

Conread position: 54-296
Cow position: chrX:32942827-32943070 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 181
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 21, 57

Conread position: 54-318
Cow position: chrX:16836045-16836303 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 190
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 57, 27

Conread position: 54-337
Cow position: chrX:17956939-17956661 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 201
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 52, 28

Conread position: 54-418
Cow position: chrX:4403568-4403197 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 256
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 57, 28

Conread position: 54-535
Cow position: chrX:7722225-7721754 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 80

Conread position: 54-535
Cow position: chrX:15146946-15147416 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 114

Conread position: 54-535
Cow position: chrX:42380861-42381330 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 37

Conread position: 55-284
Cow position: chrX:34508813-34508562 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 28, 78

Conread position: 55-288
Cow position: chrX:42449758-42450000 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 167
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 10, 146

Conread position: 55-299
Cow position: chrX:27668713-27668954 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 189
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 56, 27

Conread position: 55-313
Cow position: chrX:42894172-42893914 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 180
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 50, 78

Conread position: 55-322
Cow position: chrX:26205207-26205466 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 183
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 22, 37

Conread position: 55-343
Cow position: chrX:16984881-16984587 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 220
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 59, 23

Conread position: 55-347
Cow position: chrX:6599525-6599828 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 27

Conread position: 55-395
Cow position: chrX:47345580-47345240 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 100

Conread position: 55-445
Cow position: chrX:5919739-5919352 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 56

Conread position: 55-525
Cow position: chrX:3580196-3579716 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 128

Conread position: 55-529
Cow position: chrX:13191320-13191768 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 312
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 160, 23

Conread position: 55-532
Cow position: chrX:41674346-41673876 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 10

Conread position: 55-535
Cow position: chrX:4996839-4996381 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 248

Conread position: 55-535
Cow position: chrX:27431676-27432149 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 26

Conread position: 56-239
Cow position: chrX:40556215-40556396 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 55, 17

Conread position: 56-277
Cow position: chrX:32867120-32866900 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 165
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 23, 108

Conread position: 56-382
Cow position: chrX:48071408-48071080 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 221
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 55, 17

Conread position: 56-450
Cow position: chrX:46546626-46547021 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 261
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 54, 25

Conread position: 57-234
Cow position: chrX:11589122-11589299 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 54, 22

Conread position: 57-256
Cow position: chrX:20666654-20666855 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 141
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 54, 151

Conread position: 57-267
Cow position: chrX:4092170-4091959 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 144
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 7, 26

Conread position: 57-275
Cow position: chrX:35409996-35409779 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 54, 14

Conread position: 57-393
Cow position: chrX:1466411-1466069 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 92

Conread position: 57-408
Cow position: chrX:12095522-12095880 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 251
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 20, 132

Conread position: 57-461
Cow position: chrX:27207045-27206639 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 295
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 29, 74

Conread position: 57-524
Cow position: chrX:12979589-12980050 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 24

Conread position: 57-535
Cow position: chrX:31948688-31949161 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 24

Conread position: 58-346
Cow position: chrX:11325863-11326143 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 214
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 56, 7

Conread position: 58-362
Cow position: chrX:20957485-20957190 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 223
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 20, 34

Conread position: 58-535
Cow position: chrX:17795229-17794755 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 42

Conread position: 59-305
Cow position: chrX:17293203-17292951 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 171
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 119

Conread position: 59-436
Cow position: chrX:41871304-41870938 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 74

Conread position: 59-479
Cow position: chrX:22387000-22387421 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 20

Conread position: 60-305
Cow position: chrX:39290599-39290356 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 178
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 55, 28

Conread position: 60-379
Cow position: chrX:4152798-4153113 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 239
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 12, 87

Conread position: 60-446
Cow position: chrX:29723996-29723596 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 276
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 51, 134

Conread position: 60-512
Cow position: chrX:41526290-41526730 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 22

Conread position: 60-516
Cow position: chrX:8869159-8869618 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 86

Conread position: 60-528
Cow position: chrX:13177241-13177688 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 21

Conread position: 61-276
Cow position: chrX:23358873-23359085 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 160
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 50, 94

Conread position: 61-431
Cow position: chrX:43115392-43115021 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 27

Conread position: 61-535
Cow position: chrX:7351548-7351069 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 133

Conread position: 62-253
Cow position: chrX:31983335-31983536 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 49, 0

Conread position: 62-267
Cow position: chrX:34991603-34991399 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 160
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 9, 20

Conread position: 62-329
Cow position: chrX:28940487-28940219 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 192
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 49, 84

Conread position: 62-331
Cow position: chrX:48532559-48532286 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 180
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 12, 115

Conread position: 62-340
Cow position: chrX:19394797-19394515 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 204
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 52, 20

Conread position: 62-380
Cow position: chrX:36866416-36866092 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 218
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 49, 138

Conread position: 62-399
Cow position: chrX:34836833-34837152 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 16

Conread position: 62-465
Cow position: chrX:34504810-34505212 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 27

Conread position: 62-514
Cow position: chrX:34412091-34411631 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 344

Conread position: 62-525
Cow position: chrX:29601584-29602053 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 111

Conread position: 62-535
Cow position: chrX:9650782-9651276 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 104

Conread position: 62-535
Cow position: chrX:27705827-27705363 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 327
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 49, 11

Conread position: 63-232
Cow position: chrX:4486781-4486954 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 20, 101

Conread position: 63-376
Cow position: chrX:19469275-19469575 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 234
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 51, 15

Conread position: 63-393
Cow position: chrX:45649110-45648781 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 241
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 46, 16

Conread position: 63-461
Cow position: chrX:32821281-32820868 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 25

Conread position: 63-472
Cow position: chrX:4399360-4398959 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 81

Conread position: 63-535
Cow position: chrX:33854983-33855463 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 81

Conread position: 64-339
Cow position: chrX:40531787-40532080 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 213
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 47, 17

Conread position: 64-363
Cow position: chrX:13122185-13121868 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 210
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 47, 138

Conread position: 64-445
Cow position: chrX:20584553-20584178 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 82

Conread position: 64-535
Cow position: chrX:4632611-4633081 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 137

Conread position: 65-242
Cow position: chrX:11602246-11602423 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 126
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 14, 163

Conread position: 65-380
Cow position: chrX:22115074-22115396 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 244

Conread position: 65-415
Cow position: chrX:42927590-42927933 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 57

Conread position: 65-454
Cow position: chrX:25207620-25207996 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 278
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 12, 82

Conread position: 65-456
Cow position: chrX:15231416-15231809 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 263
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 12, 133

Conread position: 65-535
Cow position: chrX:10865629-10866097 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 135

Conread position: 65-535
Cow position: chrX:25815655-25816126 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 131

Conread position: 65-535
Cow position: chrX:38964333-38963879 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 13

Conread position: 66-286
Cow position: chrX:31480203-31479987 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 45, 18

Conread position: 66-287
Cow position: chrX:35659034-35658814 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 150
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 10, 172

Conread position: 66-348
Cow position: chrX:22392749-22393031 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 88

Conread position: 66-387
Cow position: chrX:40680853-40680525 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 212
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 46, 16

Conread position: 66-399
Cow position: chrX:42855702-42855358 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 229
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 45, 335

Conread position: 66-410
Cow position: chrX:29230246-29229901 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 245

Conread position: 66-535
Cow position: chrX:37489967-37489500 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 324
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 40, 22

Conread position: 67-235
Cow position: chrX:14135911-14135745 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 44, 14

Conread position: 67-286
Cow position: chrX:20583899-20583682 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 163
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 9, 75

Conread position: 67-319
Cow position: chrX:26843028-26843283 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 188
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 44, 130

Conread position: 67-331
Cow position: chrX:48574885-48574618 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 177
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 44, 110

Conread position: 67-343
Cow position: chrX:24749326-24749047 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 205
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 16, 176

Conread position: 67-348
Cow position: chrX:27306677-27306407 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 202
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 151, 57

Conread position: 67-535
Cow position: chrX:161638-161198 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 313
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 148, 67

Conread position: 68-331
Cow position: chrX:44590824-44591090 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 172
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 43, 125

Conread position: 68-461
Cow position: chrX:27145836-27145463 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 78

Conread position: 68-472
Cow position: chrX:34792086-34792477 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 78

Conread position: 68-535
Cow position: chrX:21593528-21593053 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 178

Conread position: 68-535
Cow position: chrX:22482452-22482919 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 78

Conread position: 68-535
Cow position: chrX:42246944-42247414 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 330

Conread position: 69-287
Cow position: chrX:908177-907961 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 155
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 36, 95

Conread position: 69-288
Cow position: chrX:4559968-4559753 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 153
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 43, 12

Conread position: 69-514
Cow position: chrX:29541991-29542427 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 78

Conread position: 69-530
Cow position: chrX:22075031-22074575 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 54

Conread position: 69-530
Cow position: chrX:37072622-37072181 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 77

Conread position: 70-306
Cow position: chrX:32208591-32208826 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 174
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 7, 58

Conread position: 70-535
Cow position: chrX:10251969-10252412 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 11

Conread position: 71-246
Cow position: chrX:6480361-6480540 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 71-278
Cow position: chrX:46079323-46079109 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 155
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 7, 42

Conread position: 71-311
Cow position: chrX:4467189-4466958 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 181
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 11, 79

Conread position: 71-320
Cow position: chrX:40337144-40336893 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 169
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 11

Conread position: 71-387
Cow position: chrX:6559223-6559531 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 218
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 40, 17

Conread position: 71-509
Cow position: chrX:29544653-29545083 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 17

Conread position: 71-534
Cow position: chrX:30922406-30921956 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 323
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 40, 118

Conread position: 71-535
Cow position: chrX:47873101-47873571 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 312
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 11, 99

Conread position: 73-253
Cow position: chrX:25930872-25930686 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 41, 124

Conread position: 73-288
Cow position: chrX:3806910-3806696 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 38, 82

Conread position: 73-297
Cow position: chrX:38302047-38301814 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 160
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 73-305
Cow position: chrX:38587613-38587846 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 157
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 144, 0

Conread position: 73-374
Cow position: chrX:1087916-1088209 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 219
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 42, 83

Conread position: 73-433
Cow position: chrX:40685097-40685463 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 98

Conread position: 73-445
Cow position: chrX:34314253-34313889 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 95

Conread position: 73-450
Cow position: chrX:21986069-21986441 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 70

Conread position: 73-514
Cow position: chrX:38853443-38852988 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 181

Conread position: 73-524
Cow position: chrX:6414264-6413827 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 35

Conread position: 73-525
Cow position: chrX:24365590-24366052 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 122

Conread position: 73-528
Cow position: chrX:40035210-40035673 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 18

Conread position: 73-531
Cow position: chrX:37780880-37781339 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 81

Conread position: 73-535
Cow position: chrX:12437051-12437469 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 322
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 38, 66

Conread position: 73-535
Cow position: chrX:13913307-13912849 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 86

Conread position: 73-535
Cow position: chrX:40557426-40557906 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 399

Conread position: 74-364
Cow position: chrX:4109416-4109129 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 197
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 35, 205

Conread position: 74-421
Cow position: chrX:26881331-26881688 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 50

Conread position: 74-504
Cow position: chrX:1499885-1499471 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 84

Conread position: 74-535
Cow position: chrX:38218944-38218485 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 69

Conread position: 75-252
Cow position: chrX:23471638-23471816 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 71

Conread position: 75-374
Cow position: chrX:48004076-48003774 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 208
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 36, 86

Conread position: 75-392
Cow position: chrX:4296594-4296910 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 220
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 36, 68

Conread position: 75-393
Cow position: chrX:33654613-33654933 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 224
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 34, 95

Conread position: 75-445
Cow position: chrX:47279707-47280076 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 254
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 33, 14

Conread position: 75-529
Cow position: chrX:30133094-30133548 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 36

Conread position: 75-535
Cow position: chrX:9251933-9252408 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 71

Conread position: 75-535
Cow position: chrX:14883727-14884192 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 79

Conread position: 75-535
Cow position: chrX:20339665-20340121 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 120

Conread position: 75-535
Cow position: chrX:34377169-34376727 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 71

Conread position: 75-535
Cow position: chrX:40826520-40826977 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 118

Conread position: 75-535
Cow position: chrX:48010835-48010364 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 118

Conread position: 79-311
Cow position: chrX:27074825-27075060 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 156
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 32, 91

Conread position: 79-381
Cow position: chrX:39220314-39220000 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 217
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 32, 246

Conread position: 79-528
Cow position: chrX:44397237-44396792 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 103

Conread position: 79-535
Cow position: chrX:38642468-38642030 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 32

Conread position: 79-535
Cow position: chrX:40269734-40269246 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 50

Conread position: 80-528
Cow position: chrX:1615833-1616271 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 60

Conread position: 81-265
Cow position: chrX:41858660-41858845 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 28, 65

Conread position: 81-398
Cow position: chrX:20168779-20168461 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 214
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 135, 96

Conread position: 81-445
Cow position: chrX:8917619-8917252 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 90

Conread position: 82-289
Cow position: chrX:41862578-41862377 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 134, 27

Conread position: 83-535
Cow position: chrX:34544008-34543557 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 87

Conread position: 84-535
Cow position: chrX:47344520-47344064 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 111

Conread position: 86-444
Cow position: chrX:48646390-48646743 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 235
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 24, 47

Conread position: 86-453
Cow position: chrX:27228348-27227971 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 218

Conread position: 88-431
Cow position: chrX:45875607-45875261 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 240
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 23, 93

Conread position: 88-433
Cow position: chrX:48262822-48262474 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 237
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 23, 47

Conread position: 88-533
Cow position: chrX:26493224-26492774 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 107

Conread position: 88-535
Cow position: chrX:20152065-20151620 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 318
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 23, 55

Conread position: 89-535
Cow position: chrX:31436685-31436250 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 57

Conread position: 91-513
Cow position: chrX:35273586-35273144 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 161

Conread position: 97-535
Cow position: chrX:35543092-35542661 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 66

Conread position: 101-401
Cow position: chrX:169340-169640 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 213
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 42, 160

Conread position: 104-364
Cow position: chrX:13147178-13146918 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 178
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 78, 86

Conread position: 104-367
Cow position: chrX:19965197-19965468 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 178
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 78, 87

Conread position: 104-405
Cow position: chrX:40283321-40283021 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 206
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 76, 89

Conread position: 104-417
Cow position: chrX:46291339-46291023 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 230
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 111, 39

Conread position: 104-425
Cow position: chrX:27945855-27946183 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 212
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 78, 87

Conread position: 104-471
Cow position: chrX:14275550-14275901 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 39

Conread position: 104-493
Cow position: chrX:47484064-47484459 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 87

Conread position: 104-535
Cow position: chrX:11844042-11844471 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 296
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 78, 92

Conread position: 104-535
Cow position: chrX:13647586-13648014 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 184

Conread position: 104-535
Cow position: chrX:31294371-31294772 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 302
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 49, 191

Conread position: 109-286
Cow position: chrX:47079821-47079643 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 104, 0

Conread position: 109-468
Cow position: chrX:27302070-27301701 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 247
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 74, 83

Conread position: 111-478
Cow position: chrX:31252599-31252245 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 146

Conread position: 112-410
Cow position: chrX:4515878-4515577 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 214
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 143, 31

Conread position: 119-530
Cow position: chrX:16416686-16416283 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 291
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 22, 74

Conread position: 124-398
Cow position: chrX:23113461-23113178 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 199
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 93, 36

Conread position: 128-535
Cow position: chrX:45175022-45174614 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 12

Conread position: 133-328
Cow position: chrX:44926625-44926443 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 82, 35

Conread position: 133-530
Cow position: chrX:41884242-41884643 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 28

Conread position: 140-412
Cow position: chrX:23562794-23562524 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 186
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 77, 7

Conread position: 140-527
Cow position: chrX:32623733-32623360 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 36

Conread position: 140-533
Cow position: chrX:878215-878599 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 215

Conread position: 140-534
Cow position: chrX:17726141-17725749 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 324

Conread position: 141-357
Cow position: chrX:44095418-44095204 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 160
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 5, 24

Conread position: 141-411
Cow position: chrX:45670384-45670117 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 194
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 75, 182

Conread position: 141-533
Cow position: chrX:33640139-33639743 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 232

Conread position: 153-381
Cow position: chrX:36514741-36514974 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 160
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 153-421
Cow position: chrX:27119842-27119579 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 179
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 63, 29

Conread position: 156-535
Cow position: chrX:25338333-25337949 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 13

Conread position: 157-299
Cow position: chrX:29501738-29501878 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 60, 116

Conread position: 157-535
Cow position: chrX:42469794-42470167 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 191

Conread position: 158-535
Cow position: chrX:29289723-29289346 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 34

Conread position: 166-535
Cow position: chrX:7695885-7695531 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 11

Conread position: 166-535
Cow position: chrX:11454912-11455282 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 262
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 142, 52

Conread position: 166-535
Cow position: chrX:45414166-45414530 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 132

Conread position: 167-454
Cow position: chrX:46433627-46433333 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 208
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 35, 31

Conread position: 167-530
Cow position: chrX:39558213-39558573 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 250

Conread position: 167-535
Cow position: chrX:15815222-15814867 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 131

Conread position: 168-412
Cow position: chrX:33539305-33539054 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 182
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 47, 120

Conread position: 168-432
Cow position: chrX:19273572-19273854 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 168-533
Cow position: chrX:35224432-35224074 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 130

Conread position: 168-533
Cow position: chrX:37232542-37232181 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 74

Conread position: 168-535
Cow position: chrX:17964387-17964752 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 253
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 49, 115

Conread position: 169-329
Cow position: chrX:4615877-4616035 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 47, 21

Conread position: 169-348
Cow position: chrX:19943102-19943282 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 48, 55

Conread position: 169-383
Cow position: chrX:5135386-5135607 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 163
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 44, 8

Conread position: 169-440
Cow position: chrX:616125-616401 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 128

Conread position: 169-496
Cow position: chrX:31312163-31311835 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 288

Conread position: 169-525
Cow position: chrX:23092005-23091661 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 164

Conread position: 169-530
Cow position: chrX:618875-619233 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 36

Conread position: 169-535
Cow position: chrX:42171163-42171529 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 6

Conread position: 170-490
Cow position: chrX:36068148-36067835 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 218

Conread position: 170-535
Cow position: chrX:11938801-11939154 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 11

Conread position: 171-318
Cow position: chrX:45382914-45383061 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 46, 67

Conread position: 171-361
Cow position: chrX:46429687-46429881 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 157
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 46, 0

Conread position: 171-367
Cow position: chrX:12082192-12082391 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 46, 74

Conread position: 171-383
Cow position: chrX:41192836-41192626 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 158
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 48, 173

Conread position: 171-529
Cow position: chrX:630178-630532 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 239
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 14, 20

Conread position: 171-533
Cow position: chrX:32431756-32431399 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 240
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 46, 202

Conread position: 172-461
Cow position: chrX:41068856-41068567 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 208
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 49, 229

Conread position: 172-526
Cow position: chrX:37574971-37574635 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 123

Conread position: 172-535
Cow position: chrX:27176182-27176550 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 252
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 13, 19

Conread position: 177-340
Cow position: chrX:29585245-29585083 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 40, 116

Conread position: 177-348
Cow position: chrX:25328490-25328651 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 40, 93

Conread position: 177-535
Cow position: chrX:11073065-11073421 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 195

Conread position: 179-530
Cow position: chrX:48194913-48195266 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 246
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 36, 7

Conread position: 179-533
Cow position: chrX:46722612-46722969 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 7

Conread position: 179-535
Cow position: chrX:19690338-19689988 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 240
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 38, 5

Conread position: 183-496
Cow position: chrX:47362503-47362802 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 223
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 34, 175

Conread position: 190-496
Cow position: chrX:23785759-23785463 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 219
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 204, 107

Conread position: 190-533
Cow position: chrX:10959282-10959629 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 241
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 25, 284

Conread position: 190-535
Cow position: chrX:7572018-7571676 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 204

Conread position: 190-535
Cow position: chrX:21004797-21004454 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 240
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 25, 234

Conread position: 197-520
Cow position: chrX:39126432-39126123 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 219
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 18, 98

Conread position: 206-535
Cow position: chrX:27680495-27680173 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 155

Conread position: 208-530
Cow position: chrX:34402095-34401772 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 79

Conread position: 210-453
Cow position: chrX:48570895-48571145 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 170
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 7, 229

Conread position: 210-507
Cow position: chrX:47300810-47301105 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 205
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 7, 88

Conread position: 210-533
Cow position: chrX:48652628-48652955 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 219
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 7, 88

Conread position: 210-534
Cow position: chrX:488597-488261 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 238
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 7, 261

Conread position: 210-535
Cow position: chrX:45403732-45404064 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 232
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 7, 255

Conread position: 210-535
Cow position: chrX:47967700-47967369 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 234
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 7, 217

Conread position: 214-455
Cow position: chrX:12405293-12405541 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 175
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 95, 83

Conread position: 214-507
Cow position: chrX:47302789-47303081 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 200
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 130, 83

Conread position: 214-535
Cow position: chrX:6278410-6278736 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 246

Conread position: 217-413
Cow position: chrX:4991928-4992128 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 140
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 87, 80

Conread position: 217-535
Cow position: chrX:42507563-42507877 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 224
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 133, 80

Conread position: 228-529
Cow position: chrX:13785286-13785591 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 254

Conread position: 232-533
Cow position: chrX:26875811-26876109 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 229

Conread position: 247-535
Cow position: chrX:34991091-34990811 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 200

Conread position: 249-380
Cow position: chrX:5677838-5677971 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 97, 0

Show alignments to all cow chromosomes.