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Cow genome map

           
Conread name:
           
rdbla0119_n20.y1
        

               
Conread position:
               
8-513
               

               
Cow position:
               
chr1:17292127-17291622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 51
               

               
Conread position:
               
9-517
               

               
Cow position:
               
chr1:81161543-81162025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 31
               

               
Conread position:
               
14-338
               

               
Cow position:
               
chr1:82569201-82569518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
9, 46
               

               
Conread position:
               
19-484
               

               
Cow position:
               
chr1:25183655-25184124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 42
               

               
Conread position:
               
21-517
               

               
Cow position:
               
chr1:71135702-71136176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 38
               

               
Conread position:
               
26-514
               

               
Cow position:
               
chr1:28176553-28177028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 33
               

               
Conread position:
               
28-517
               

               
Cow position:
               
chr1:20098904-20099392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
28, 59
               

               
Conread position:
               
29-395
               

               
Cow position:
               
chr1:41093320-41092961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
204, 30
               

               
Conread position:
               
31-449
               

               
Cow position:
               
chr1:97761183-97761572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
237, 28
               

               
Conread position:
               
31-513
               

               
Cow position:
               
chr1:71946810-71946351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
202, 26
               

               
Conread position:
               
32-391
               

               
Cow position:
               
chr1:32360591-32360239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 27
               

               
Conread position:
               
32-456
               

               
Cow position:
               
chr1:14561402-14560979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 27
               

               
Conread position:
               
32-514
               

               
Cow position:
               
chr1:45007025-45007484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
193, 27
               

               
Conread position:
               
32-517
               

               
Cow position:
               
chr1:68818258-68817774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
32-517
               

               
Cow position:
               
chr1:77620101-77620569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
207, 27
               

               
Conread position:
               
33-338
               

               
Cow position:
               
chr1:9111458-9111146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 26
               

               
Conread position:
               
33-343
               

               
Cow position:
               
chr1:38418630-38418935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
24, 56
               

               
Conread position:
               
33-381
               

               
Cow position:
               
chr1:9437990-9437657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
197, 26
               

               
Conread position:
               
33-383
               

               
Cow position:
               
chr1:90297717-90298061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
221, 26
               

               
Conread position:
               
33-390
               

               
Cow position:
               
chr1:31814981-31815334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
200, 26
               

               
Conread position:
               
33-392
               

               
Cow position:
               
chr1:99690711-99691059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
154, 26
               

               
Conread position:
               
33-393
               

               
Cow position:
               
chr1:92198333-92198674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
33-395
               

               
Cow position:
               
chr1:83534-83883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
204, 26
               

               
Conread position:
               
33-428
               

               
Cow position:
               
chr1:33716777-33717165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
192, 26
               

               
Conread position:
               
33-444
               

               
Cow position:
               
chr1:17032781-17032379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
188, 26
               

               
Conread position:
               
33-447
               

               
Cow position:
               
chr1:4441547-4441145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 26
               

               
Conread position:
               
33-455
               

               
Cow position:
               
chr1:31399675-31399261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 26
               

               
Conread position:
               
33-455
               

               
Cow position:
               
chr1:74822006-74822413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
192, 27
               

               
Conread position:
               
33-456
               

               
Cow position:
               
chr1:20522123-20521726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
82, 26
               

               
Conread position:
               
33-463
               

               
Cow position:
               
chr1:15311422-15311842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 26
               

               
Conread position:
               
33-468
               

               
Cow position:
               
chr1:92370805-92370382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
195, 19
               

               
Conread position:
               
33-474
               

               
Cow position:
               
chr1:76851193-76850743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
61, 26
               

               
Conread position:
               
33-477
               

               
Cow position:
               
chr1:41004809-41004377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
188, 26
               

               
Conread position:
               
33-477
               

               
Cow position:
               
chr1:56228808-56229231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
198, 26
               

               
Conread position:
               
33-477
               

               
Cow position:
               
chr1:79590654-79591094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
34, 26
               

               
Conread position:
               
33-496
               

               
Cow position:
               
chr1:89342432-89341991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
201, 26
               

               
Conread position:
               
33-510
               

               
Cow position:
               
chr1:13056962-13056511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
83, 27
               

               
Conread position:
               
33-512
               

               
Cow position:
               
chr1:1801700-1802159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
19, 30
               

               
Conread position:
               
33-513
               

               
Cow position:
               
chr1:31190547-31190087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 26
               

               
Conread position:
               
33-513
               

               
Cow position:
               
chr1:82407006-82406530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 30
               

               
Conread position:
               
33-514
               

               
Cow position:
               
chr1:21678708-21679175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 26
               

               
Conread position:
               
33-514
               

               
Cow position:
               
chr1:22728605-22729076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 26
               

               
Conread position:
               
33-514
               

               
Cow position:
               
chr1:29915969-29916432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 26
               

               
Conread position:
               
33-514
               

               
Cow position:
               
chr1:40497128-40497588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
184, 26
               

               
Conread position:
               
33-514
               

               
Cow position:
               
chr1:71045294-71045775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 22
               

               
Conread position:
               
33-514
               

               
Cow position:
               
chr1:84255314-84255787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 24
               

               
Conread position:
               
33-516
               

               
Cow position:
               
chr1:98551277-98551742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
423, 26
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr1:3323410-3323891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
188, 22
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr1:6795393-6794898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 26
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr1:19465617-19466076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
188, 16
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr1:43353093-43352631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
200, 27
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr1:44164632-44165109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
132, 26
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr1:46885648-46886117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
162, 47
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr1:54199823-54199356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 13
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr1:63391216-63390744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
200, 27
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr1:66356159-66355690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 26
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr1:99808179-99807693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 28
               

               
Conread position:
               
34-344
               

               
Cow position:
               
chr1:20950255-20950556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
189, 21
               

               
Conread position:
               
34-344
               

               
Cow position:
               
chr1:54179230-54179533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
199, 25
               

               
Conread position:
               
34-356
               

               
Cow position:
               
chr1:4226797-4227111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
168, 25
               

               
Conread position:
               
34-378
               

               
Cow position:
               
chr1:13797534-13797192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
52, 25
               

               
Conread position:
               
34-384
               

               
Cow position:
               
chr1:88648411-88648058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
135, 21
               

               
Conread position:
               
34-493
               

               
Cow position:
               
chr1:14528651-14528193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 25
               

               
Conread position:
               
34-500
               

               
Cow position:
               
chr1:11914315-11913872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
32, 25
               

               
Conread position:
               
34-511
               

               
Cow position:
               
chr1:71938953-71938491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
29, 55
               

               
Conread position:
               
34-514
               

               
Cow position:
               
chr1:29671953-29671501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
317, 25
               

               
Conread position:
               
34-515
               

               
Cow position:
               
chr1:73522586-73522126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 26
               

               
Conread position:
               
34-515
               

               
Cow position:
               
chr1:97422741-97422274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 25
               

               
Conread position:
               
34-517
               

               
Cow position:
               
chr1:665928-666389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
179, 25
               

               
Conread position:
               
34-517
               

               
Cow position:
               
chr1:5162511-5162021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 25
               

               
Conread position:
               
34-517
               

               
Cow position:
               
chr1:45289310-45288848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 25
               

               
Conread position:
               
35-420
               

               
Cow position:
               
chr1:40062004-40062381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
118, 20
               

               
Conread position:
               
35-463
               

               
Cow position:
               
chr1:99136871-99136460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 24
               

               
Conread position:
               
35-478
               

               
Cow position:
               
chr1:41696619-41697047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
421, 24
               

               
Conread position:
               
35-513
               

               
Cow position:
               
chr1:68253149-68253612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 22
               

               
Conread position:
               
35-515
               

               
Cow position:
               
chr1:97622650-97622195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 24
               

               
Conread position:
               
35-516
               

               
Cow position:
               
chr1:21786876-21787358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 24
               

               
Conread position:
               
35-517
               

               
Cow position:
               
chr1:68619362-68618909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
10, 25
               

               
Conread position:
               
36-478
               

               
Cow position:
               
chr1:69941405-69940982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
189, 21
               

               
Conread position:
               
36-517
               

               
Cow position:
               
chr1:57639942-57639492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
394, 23
               

               
Conread position:
               
37-456
               

               
Cow position:
               
chr1:25119476-25119066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
22, 52
               

               
Conread position:
               
37-517
               

               
Cow position:
               
chr1:76223131-76222665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 22
               

               
Conread position:
               
38-393
               

               
Cow position:
               
chr1:8161040-8160693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
62, 21
               

               
Conread position:
               
38-517
               

               
Cow position:
               
chr1:54258133-54258590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 21
               

               
Conread position:
               
40-393
               

               
Cow position:
               
chr1:101792532-101792196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
193, 19
               

               
Conread position:
               
40-512
               

               
Cow position:
               
chr1:4374775-4374319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 19
               

               
Conread position:
               
47-444
               

               
Cow position:
               
chr1:31765823-31765434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
186, 14
               

               
Conread position:
               
47-517
               

               
Cow position:
               
chr1:80974058-80973580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 21
               

               
Conread position:
               
52-405
               

               
Cow position:
               
chr1:48083135-48083471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
295, 8
               

               
Conread position:
               
56-421
               

               
Cow position:
               
chr1:31358624-31358272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
165, 17
               

               
Conread position:
               
58-461
               

               
Cow position:
               
chr1:70282517-70282906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 28
               

               
Conread position:
               
58-477
               

               
Cow position:
               
chr1:43285628-43285219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
163, 28
               

               
Conread position:
               
58-517
               

               
Cow position:
               
chr1:82504547-82504999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 28
               

               
Conread position:
               
61-390
               

               
Cow position:
               
chr1:60259017-60259339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
67, 25
               

               
Conread position:
               
63-325
               

               
Cow position:
               
chr1:51359257-51358996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
80, 32
               

               
Conread position:
               
75-363
               

               
Cow position:
               
chr1:21221361-21221077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
179, 22
               

               
Conread position:
               
84-517
               

               
Cow position:
               
chr1:10719894-10719455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 28
               

               
Conread position:
               
84-517
               

               
Cow position:
               
chr1:23041173-23041589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
15, 31
               

               
Conread position:
               
87-452
               

               
Cow position:
               
chr1:56073867-56073500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
92-373
               

               
Cow position:
               
chr1:57541895-57541617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
24, 20
               

               
Conread position:
               
95-516
               

               
Cow position:
               
chr1:41736011-41735597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 129
               

               
Conread position:
               
96-478
               

               
Cow position:
               
chr1:31348825-31348452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
18, 126
               

               
Conread position:
               
97-517
               

               
Cow position:
               
chr1:35844318-35843903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
18, 54
               

               
Conread position:
               
98-298
               

               
Cow position:
               
chr1:43789292-43789503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 44
               

               
Conread position:
               
98-475
               

               
Cow position:
               
chr1:7800224-7800597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 13
               

               
Conread position:
               
101-455
               

               
Cow position:
               
chr1:82884772-82884426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
122, 133
               

               
Conread position:
               
101-514
               

               
Cow position:
               
chr1:50634798-50634383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 88
               

               
Conread position:
               
101-517
               

               
Cow position:
               
chr1:94526109-94526525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 13
               

               
Conread position:
               
104-514
               

               
Cow position:
               
chr1:48105819-48105411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
135, 9
               

               
Conread position:
               
107-340
               

               
Cow position:
               
chr1:42175180-42175420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 31
               

               
Conread position:
               
107-513
               

               
Cow position:
               
chr1:68854801-68855184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
354, 125
               

               
Conread position:
               
107-514
               

               
Cow position:
               
chr1:3035371-3034979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
13, 55
               

               
Conread position:
               
107-516
               

               
Cow position:
               
chr1:61392174-61391762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
114, 202
               

               
Conread position:
               
107-517
               

               
Cow position:
               
chr1:80869727-80870138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
118, 32
               

               
Conread position:
               
107-517
               

               
Cow position:
               
chr1:81356084-81355682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
111, 226
               

               
Conread position:
               
107-517
               

               
Cow position:
               
chr1:81569417-81569005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 245
               

               
Conread position:
               
107-517
               

               
Cow position:
               
chr1:91800979-91800576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
373, 69
               

               
Conread position:
               
107-517
               

               
Cow position:
               
chr1:91817152-91816748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 241
               

               
Conread position:
               
107-517
               

               
Cow position:
               
chr1:100400579-100400170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
148, 115
               

               
Conread position:
               
108-371
               

               
Cow position:
               
chr1:42869531-42869277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
147, 62
               

               
Conread position:
               
108-516
               

               
Cow position:
               
chr1:61725493-61725092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
125, 242
               

               
Conread position:
               
108-517
               

               
Cow position:
               
chr1:3657747-3657338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 161
               

               
Conread position:
               
113-515
               

               
Cow position:
               
chr1:24235893-24235498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
126, 108
               

               
Conread position:
               
114-507
               

               
Cow position:
               
chr1:9444216-9443833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 113
               

               
Conread position:
               
114-513
               

               
Cow position:
               
chr1:7657693-7657290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 103
               

               
Conread position:
               
114-517
               

               
Cow position:
               
chr1:35162035-35162433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
112, 49
               

               
Conread position:
               
115-462
               

               
Cow position:
               
chr1:57576135-57575789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
118, 108
               

               
Conread position:
               
115-516
               

               
Cow position:
               
chr1:9870226-9869828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 82
               

               
Conread position:
               
115-517
               

               
Cow position:
               
chr1:84239459-84239086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
331, 72
               

               
Conread position:
               
121-462
               

               
Cow position:
               
chr1:5873337-5873000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
98, 15
               

               
Conread position:
               
122-513
               

               
Cow position:
               
chr1:8243012-8243396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
81, 71
               

               
Conread position:
               
124-463
               

               
Cow position:
               
chr1:1877665-1878002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
99, 14
               

               
Conread position:
               
128-473
               

               
Cow position:
               
chr1:78751062-78750705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 221
               

               
Conread position:
               
132-477
               

               
Cow position:
               
chr1:70933732-70933397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
123, 29
               

               
Conread position:
               
133-498
               

               
Cow position:
               
chr1:84602280-84601919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
265, 99
               

               
Conread position:
               
138-353
               

               
Cow position:
               
chr1:22199820-22200030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
140-517
               

               
Cow position:
               
chr1:57119691-57119323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
71, 82
               

               
Conread position:
               
142-513
               

               
Cow position:
               
chr1:63503995-63504355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
91, 146
               

               
Conread position:
               
142-517
               

               
Cow position:
               
chr1:24133397-24133037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
91, 49
               

               
Conread position:
               
142-517
               

               
Cow position:
               
chr1:57247087-57247458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
45, 172
               

               
Conread position:
               
142-517
               

               
Cow position:
               
chr1:69695352-69694968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
86, 76
               

               
Conread position:
               
144-442
               

               
Cow position:
               
chr1:67014042-67014338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
82, 37
               

               
Conread position:
               
148-469
               

               
Cow position:
               
chr1:95215516-95215202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
308, 45
               

               
Conread position:
               
150-517
               

               
Cow position:
               
chr1:81913487-81913128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
83, 70
               

               
Conread position:
               
152-490
               

               
Cow position:
               
chr1:53594989-53595317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
74, 110
               

               
Conread position:
               
164-512
               

               
Cow position:
               
chr1:85596622-85596962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 139
               

               
Conread position:
               
165-509
               

               
Cow position:
               
chr1:57901060-57900726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
69, 101
               

               
Conread position:
               
167-475
               

               
Cow position:
               
chr1:80988028-80988329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
66, 53
               

               
Conread position:
               
170-455
               

               
Cow position:
               
chr1:49839204-49839469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
175-514
               

               
Cow position:
               
chr1:88652318-88652651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
58, 127
               

               
Conread position:
               
176-517
               

               
Cow position:
               
chr1:22448896-22448558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
79, 49
               

               
Conread position:
               
177-517
               

               
Cow position:
               
chr1:18937144-18936811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
49, 84
               

               
Conread position:
               
179-509
               

               
Cow position:
               
chr1:68845789-68845469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 64
               

               
Conread position:
               
183-515
               

               
Cow position:
               
chr1:35170032-35170359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
42, 126
               

               
Conread position:
               
187-516
               

               
Cow position:
               
chr1:33811633-33811952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
34, 75
               

               
Conread position:
               
230-517
               

               
Cow position:
               
chr1:21934425-21934150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
244, 71
               

               
Conread position:
               
237-511
               

               
Cow position:
               
chr1:7143094-7142828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
241-515
               

               
Cow position:
               
chr1:23099656-23099924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
71, 90
               

               
Conread position:
               
241-515
               

               
Cow position:
               
chr1:29975838-29975578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
231, 24
               

               
Conread position:
               
246-517
               

               
Cow position:
               
chr1:73196469-73196208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
66, 27
               

               
Conread position:
               
247-517
               

               
Cow position:
               
chr1:69415954-69415686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 99
               

               
Conread position:
               
250-517
               

               
Cow position:
               
chr1:98360642-98360373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
131, 96
               

               
Conread position:
               
251-512
               

               
Cow position:
               
chr1:101812507-101812256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
164, 38
               

               
Conread position:
               
252-511
               

               
Cow position:
               
chr1:16973070-16972821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
238, 78
               

               
Conread position:
               
253-473
               

               
Cow position:
               
chr1:6881454-6881244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
48, 60
               

               
Conread position:
               
253-506
               

               
Cow position:
               
chr1:51836341-51836586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
242, 71
               

               
Conread position:
               
253-513
               

               
Cow position:
               
chr1:92551364-92551125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
47, 52
               

               
Conread position:
               
253-514
               

               
Cow position:
               
chr1:79165321-79165062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
64, 94
               

               
Conread position:
               
253-517
               

               
Cow position:
               
chr1:4290928-4291189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
127, 79
               

               
Conread position:
               
253-517
               

               
Cow position:
               
chr1:51256807-51257042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
213, 34
               

               
Conread position:
               
253-517
               

               
Cow position:
               
chr1:54478094-54478352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
220, 47
               

               
Conread position:
               
253-517
               

               
Cow position:
               
chr1:56634868-56635121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
222, 93
               

               
Conread position:
               
254-513
               

               
Cow position:
               
chr1:86325840-86325586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
223, 92
               

               
Conread position:
               
254-517
               

               
Cow position:
               
chr1:82338014-82337753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
8, 36
               

               
Conread position:
               
255-438
               

               
Cow position:
               
chr1:51628730-51628552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
128, 91
               

               
Conread position:
               
256-405
               

               
Cow position:
               
chr1:65637977-65638124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
256-429
               

               
Cow position:
               
chr1:98613014-98613180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
256-438
               

               
Cow position:
               
chr1:30504243-30504418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
256-449
               

               
Cow position:
               
chr1:7186560-7186753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 91
               

               
Conread position:
               
256-449
               

               
Cow position:
               
chr1:92010086-92010274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
256-451
               

               
Cow position:
               
chr1:78857550-78857362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
256-456
               

               
Cow position:
               
chr1:56748362-56748559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
256-456
               

               
Cow position:
               
chr1:90864527-90864328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
147, 90
               

               
Conread position:
               
256-464
               

               
Cow position:
               
chr1:81277429-81277229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
192, 61
               

               
Conread position:
               
256-468
               

               
Cow position:
               
chr1:4385121-4385339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 44
               

               
Conread position:
               
256-474
               

               
Cow position:
               
chr1:20422434-20422222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 83
               

               
Conread position:
               
256-477
               

               
Cow position:
               
chr1:75744633-75744845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
256-479
               

               
Cow position:
               
chr1:81563506-81563727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
200, 33
               

               
Conread position:
               
256-490
               

               
Cow position:
               
chr1:96713041-96712812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
122, 72
               

               
Conread position:
               
256-492
               

               
Cow position:
               
chr1:13455916-13456141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
201, 89
               

               
Conread position:
               
256-493
               

               
Cow position:
               
chr1:10655250-10655488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
127, 90
               

               
Conread position:
               
256-498
               

               
Cow position:
               
chr1:97620068-97619827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
201, 90
               

               
Conread position:
               
256-505
               

               
Cow position:
               
chr1:56408386-56408630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
256-511
               

               
Cow position:
               
chr1:33986745-33986492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
98, 86
               

               
Conread position:
               
256-513
               

               
Cow position:
               
chr1:25886302-25886056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
44, 49
               

               
Conread position:
               
256-513
               

               
Cow position:
               
chr1:28284347-28284595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
56, 44
               

               
Conread position:
               
256-513
               

               
Cow position:
               
chr1:54163037-54162785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
44, 49
               

               
Conread position:
               
256-513
               

               
Cow position:
               
chr1:55146574-55146818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
256-514
               

               
Cow position:
               
chr1:24655733-24655978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
123, 17
               

               
Conread position:
               
256-514
               

               
Cow position:
               
chr1:52415187-52414937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
55, 92
               

               
Conread position:
               
256-514
               

               
Cow position:
               
chr1:56643816-56643566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
216, 68
               

               
Conread position:
               
256-515
               

               
Cow position:
               
chr1:2765189-2765435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
256-515
               

               
Cow position:
               
chr1:62732348-62732594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
50, 45
               

               
Conread position:
               
256-515
               

               
Cow position:
               
chr1:81319062-81319313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
235, 123
               

               
Conread position:
               
256-515
               

               
Cow position:
               
chr1:92642669-92642427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
256-516
               

               
Cow position:
               
chr1:8869891-8869637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
78, 9
               

               
Conread position:
               
256-516
               

               
Cow position:
               
chr1:47008803-47009055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
256-516
               

               
Cow position:
               
chr1:80764762-80764513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
256-516
               

               
Cow position:
               
chr1:95765316-95765068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:634964-635217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
127, 76
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:1165374-1165622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:6939866-6939611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
203, 43
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:10064206-10063953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:11770521-11770269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:12871234-12870986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
44, 50
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:22777778-22777520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
40, 75
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:24729067-24728816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
236, 56
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:25793667-25793411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
18, 91
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:26688705-26688448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
215, 66
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:30413358-30413618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
13, 92
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:31871193-31871452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
217, 98
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:32244626-32244372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
45, 25
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:37322232-37321975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
68, 48
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:42555042-42555289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
199, 43
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:43505296-43505552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
225, 44
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:44506741-44506996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
139, 27
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:45535475-45535730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:49131349-49131087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
202, 90
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:52994796-52995047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
198, 90
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:53039926-53039678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
242, 25
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:56477367-56477615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
200, 70
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:57635239-57635485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:59650039-59650293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
141, 42
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:63905701-63905451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:70534161-70533914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
208, 72
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:70538376-70538634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
236, 90
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:74947344-74947094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
201, 36
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:78791533-78791281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:80899880-80900143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
137, 84
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:85411352-85411604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
210, 87
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:90423313-90423057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
42, 49
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:93110853-93110593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
16, 80
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr1:93528463-93528722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
147, 86
               

               
Conread position:
               
257-477
               

               
Cow position:
               
chr1:20287888-20288101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
257-490
               

               
Cow position:
               
chr1:78689707-78689931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
137, 65
               

               
Conread position:
               
257-501
               

               
Cow position:
               
chr1:28567666-28567420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
49, 43
               

               
Conread position:
               
257-510
               

               
Cow position:
               
chr1:85783299-85783544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
215, 72
               

               
Conread position:
               
257-514
               

               
Cow position:
               
chr1:69678552-69678307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
235, 89
               

               
Conread position:
               
257-517
               

               
Cow position:
               
chr1:32341434-32341185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
44, 49
               

               
Conread position:
               
257-517
               

               
Cow position:
               
chr1:61736875-61737123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
62, 74
               

               
Conread position:
               
257-517
               

               
Cow position:
               
chr1:76096213-76096462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
215, 67
               

               
Conread position:
               
257-517
               

               
Cow position:
               
chr1:95467568-95467309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
10, 90
               

               
Conread position:
               
258-516
               

               
Cow position:
               
chr1:64189277-64189523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
35, 73
               

               
Conread position:
               
261-455
               

               
Cow position:
               
chr1:70236514-70236324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
261-489
               

               
Cow position:
               
chr1:5061799-5062025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
51, 86
               

               
Conread position:
               
261-514
               

               
Cow position:
               
chr1:46839372-46839625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
130, 85
               

               
Conread position:
               
261-517
               

               
Cow position:
               
chr1:81301317-81301068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
48, 57
               

               
Conread position:
               
265-463
               

               
Cow position:
               
chr1:64939161-64938970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
265-515
               

               
Cow position:
               
chr1:49433483-49433243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
118, 82
               

               
Conread position:
               
265-517
               

               
Cow position:
               
chr1:15691119-15691358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
268-516
               

               
Cow position:
               
chr1:84015656-84015901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
117, 78
               

               
Conread position:
               
281-515
               

               
Cow position:
               
chr1:58825346-58825566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
194, 49
               

               
Conread position:
               
283-517
               

               
Cow position:
               
chr1:63435010-63434783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
173, 63
               

               
Conread position:
               
286-517
               

               
Cow position:
               
chr1:765770-765541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
128, 60
               

               
Conread position:
               
286-517
               

               
Cow position:
               
chr1:64421133-64421354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
204, 64
               

               
Conread position:
               
290-517
               

               
Cow position:
               
chr1:69004199-69004421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
182, 56
               

               
Conread position:
               
292-478
               

               
Cow position:
               
chr1:102113300-102113118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
292-509
               

               
Cow position:
               
chr1:89443668-89443463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
180, 38
               

               
Conread position:
               
310-517
               

               
Cow position:
               
chr1:60281193-60281396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
161, 32
               

               
Conread position:
               
314-514
               

               
Cow position:
               
chr1:38525417-38525612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
158, 32
               

               
Conread position:
               
315-451
               

               
Cow position:
               
chr1:89082939-89083070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
315-486
               

               
Cow position:
               
chr1:45638315-45638482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
157, 31
               

               
Conread position:
               
315-496
               

               
Cow position:
               
chr1:13195593-13195418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
315-515
               

               
Cow position:
               
chr1:40389029-40388844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
315-517
               

               
Cow position:
               
chr1:2997775-2997972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
315-517
               

               
Cow position:
               
chr1:5278585-5278387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
315-517
               

               
Cow position:
               
chr1:57782841-57783031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
157, 17
               

               
Conread position:
               
317-517
               

               
Cow position:
               
chr1:77132433-77132633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
16, 30
               

               
Conread position:
               
319-514
               

               
Cow position:
               
chr1:90413211-90413403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
153, 27
               

               
Conread position:
               
321-516
               

               
Cow position:
               
chr1:75347454-75347647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
151, 25
               

               
Conread position:
               
321-517
               

               
Cow position:
               
chr1:24445793-24445604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
324-515
               

               
Cow position:
               
chr1:84235499-84235310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
21, 67
               

               
Conread position:
               
332-509
               

               
Cow position:
               
chr1:82370595-82370759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
142, 14
               

               
Conread position:
               
332-516
               

               
Cow position:
               
chr1:52449763-52449586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
336-517
               

               
Cow position:
               
chr1:63314677-63314857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
122, 13
               

               
Conread position:
               
337-510
               

               
Cow position:
               
chr1:38692511-38692683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
337-517
               

               
Cow position:
               
chr1:51904478-51904310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
338-511
               

               
Cow position:
               
chr1:89548038-89548211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
52, 27
               

               
Conread position:
               
338-514
               

               
Cow position:
               
chr1:77118685-77118513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
7, 16
               

               
Conread position:
               
338-514
               

               
Cow position:
               
chr1:85596202-85596023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
46, 118
               

               
Conread position:
               
338-517
               

               
Cow position:
               
chr1:20581797-20581967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
134, 47
               

               
Conread position:
               
344-488
               

               
Cow position:
               
chr1:46205672-46205815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
344-516
               

               
Cow position:
               
chr1:101771757-101771923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
9, 43
               

               
Conread position:
               
347-517
               

               
Cow position:
               
chr1:50045657-50045825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
111, 38
               

               
Conread position:
               
348-517
               

               
Cow position:
               
chr1:29657686-29657848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
351-517
               

               
Cow position:
               
chr1:57264134-57263969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
119, 34
               

               
Conread position:
               
353-510
               

               
Cow position:
               
chr1:25610612-25610458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
353-515
               

               
Cow position:
               
chr1:72731902-72732062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
353-517
               

               
Cow position:
               
chr1:85141868-85141707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
358-513
               

               
Cow position:
               
chr1:44746734-44746883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
370-517
               

               
Cow position:
               
chr1:50634381-50634233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
10, 56
               

               
Conread position:
               
380-517
               

               
Cow position:
               
chr1:31390703-31390566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
387-512
               

               
Cow position:
               
chr1:57390197-57390070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
388-517
               

               
Cow position:
               
chr1:4788432-4788561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.