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Cow genome map

           
Conread name:
           
rdbla0119_n20.y1
        

               
Conread position:
               
20-485
               

               
Cow position:
               
chr13:60429632-60430075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
16, 41
               

               
Conread position:
               
24-515
               

               
Cow position:
               
chr13:17886924-17886475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
450, 35
               

               
Conread position:
               
26-517
               

               
Cow position:
               
chr13:42114453-42113987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
207, 29
               

               
Conread position:
               
29-515
               

               
Cow position:
               
chr13:25434690-25435153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 31
               

               
Conread position:
               
31-517
               

               
Cow position:
               
chr13:34282119-34281643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 29
               

               
Conread position:
               
32-437
               

               
Cow position:
               
chr13:11290374-11290774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 28
               

               
Conread position:
               
32-477
               

               
Cow position:
               
chr13:3701868-3701445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
201, 27
               

               
Conread position:
               
32-517
               

               
Cow position:
               
chr13:19178717-19178240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 27
               

               
Conread position:
               
32-517
               

               
Cow position:
               
chr13:26382785-26383267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 27
               

               
Conread position:
               
33-299
               

               
Cow position:
               
chr13:33976104-33975852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
184, 26
               

               
Conread position:
               
33-384
               

               
Cow position:
               
chr13:25882784-25883129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
188, 26
               

               
Conread position:
               
33-391
               

               
Cow position:
               
chr13:21988670-21989016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
188, 13
               

               
Conread position:
               
33-406
               

               
Cow position:
               
chr13:27985004-27985357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
155, 26
               

               
Conread position:
               
33-437
               

               
Cow position:
               
chr13:3480188-3479779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
195, 27
               

               
Conread position:
               
33-438
               

               
Cow position:
               
chr13:21402354-21402751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 29
               

               
Conread position:
               
33-446
               

               
Cow position:
               
chr13:23444370-23444778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 26
               

               
Conread position:
               
33-454
               

               
Cow position:
               
chr13:60690281-60690698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 26
               

               
Conread position:
               
33-462
               

               
Cow position:
               
chr13:24767851-24767406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 26
               

               
Conread position:
               
33-462
               

               
Cow position:
               
chr13:49805403-49804991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 26
               

               
Conread position:
               
33-463
               

               
Cow position:
               
chr13:6945823-6945387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 28
               

               
Conread position:
               
33-468
               

               
Cow position:
               
chr13:30651612-30651192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
33-477
               

               
Cow position:
               
chr13:21235255-21235681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 26
               

               
Conread position:
               
33-490
               

               
Cow position:
               
chr13:37516704-37517141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 26
               

               
Conread position:
               
33-500
               

               
Cow position:
               
chr13:11834045-11834497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 32
               

               
Conread position:
               
33-506
               

               
Cow position:
               
chr13:17800509-17800050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
181, 26
               

               
Conread position:
               
33-509
               

               
Cow position:
               
chr13:3015731-3016200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 26
               

               
Conread position:
               
33-513
               

               
Cow position:
               
chr13:37558743-37558249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
131, 28
               

               
Conread position:
               
33-514
               

               
Cow position:
               
chr13:32773800-32773328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
100, 26
               

               
Conread position:
               
33-515
               

               
Cow position:
               
chr13:2414460-2413999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
192, 26
               

               
Conread position:
               
33-515
               

               
Cow position:
               
chr13:12233016-12233480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 26
               

               
Conread position:
               
33-516
               

               
Cow position:
               
chr13:41254062-41253590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 26
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr13:311868-311402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
188, 26
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr13:6616312-6616786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
200, 26
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr13:9803499-9803031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 26
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr13:14716898-14717372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 13
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr13:25531354-25531824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 26
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr13:51941170-51940702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 26
               

               
Conread position:
               
34-334
               

               
Cow position:
               
chr13:51902052-51901753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
192, 25
               

               
Conread position:
               
34-363
               

               
Cow position:
               
chr13:8961013-8960705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
34-385
               

               
Cow position:
               
chr13:25453605-25453262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 25
               

               
Conread position:
               
34-429
               

               
Cow position:
               
chr13:6650824-6651206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
191, 26
               

               
Conread position:
               
34-451
               

               
Cow position:
               
chr13:61976533-61976933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
199, 23
               

               
Conread position:
               
34-456
               

               
Cow position:
               
chr13:21255916-21256331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
178, 13
               

               
Conread position:
               
34-514
               

               
Cow position:
               
chr13:34052161-34052618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
194, 51
               

               
Conread position:
               
34-517
               

               
Cow position:
               
chr13:32166870-32167348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 15
               

               
Conread position:
               
34-517
               

               
Cow position:
               
chr13:46182208-46181760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
362, 25
               

               
Conread position:
               
35-478
               

               
Cow position:
               
chr13:24285984-24285564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 24
               

               
Conread position:
               
35-489
               

               
Cow position:
               
chr13:34262949-34263374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
35-517
               

               
Cow position:
               
chr13:971462-971930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
173, 24
               

               
Conread position:
               
35-517
               

               
Cow position:
               
chr13:5751987-5752460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
80, 24
               

               
Conread position:
               
35-517
               

               
Cow position:
               
chr13:22085325-22085778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
193, 22
               

               
Conread position:
               
36-513
               

               
Cow position:
               
chr13:28683785-28683334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
181, 23
               

               
Conread position:
               
37-488
               

               
Cow position:
               
chr13:46985445-46985011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
164, 22
               

               
Conread position:
               
41-517
               

               
Cow position:
               
chr13:31814293-31813844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
110, 25
               

               
Conread position:
               
42-343
               

               
Cow position:
               
chr13:26073362-26073067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
189, 17
               

               
Conread position:
               
44-393
               

               
Cow position:
               
chr13:24373835-24373488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
176, 17
               

               
Conread position:
               
47-322
               

               
Cow position:
               
chr13:33160588-33160863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
178, 12
               

               
Conread position:
               
47-449
               

               
Cow position:
               
chr13:16128243-16127840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
179, 12
               

               
Conread position:
               
49-517
               

               
Cow position:
               
chr13:12546486-12546940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
145, 10
               

               
Conread position:
               
59-468
               

               
Cow position:
               
chr13:34555937-34556322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
107, 27
               

               
Conread position:
               
62-513
               

               
Cow position:
               
chr13:43384221-43384653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 18
               

               
Conread position:
               
84-384
               

               
Cow position:
               
chr13:4441934-4441637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
99, 185
               

               
Conread position:
               
91-514
               

               
Cow position:
               
chr13:661246-661674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 27
               

               
Conread position:
               
92-473
               

               
Cow position:
               
chr13:62169156-62169537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 136
               

               
Conread position:
               
92-517
               

               
Cow position:
               
chr13:18351228-18350799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 19
               

               
Conread position:
               
99-476
               

               
Cow position:
               
chr13:21175940-21176315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
22, 116
               

               
Conread position:
               
101-389
               

               
Cow position:
               
chr13:265524-265232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
136, 253
               

               
Conread position:
               
101-430
               

               
Cow position:
               
chr13:60436499-60436833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
72, 238
               

               
Conread position:
               
105-517
               

               
Cow position:
               
chr13:7010845-7010435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 247
               

               
Conread position:
               
107-455
               

               
Cow position:
               
chr13:6606647-6606995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
116, 204
               

               
Conread position:
               
107-472
               

               
Cow position:
               
chr13:562764-563132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
118, 205
               

               
Conread position:
               
107-516
               

               
Cow position:
               
chr13:60974438-60974044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
126, 63
               

               
Conread position:
               
107-517
               

               
Cow position:
               
chr13:17855745-17855340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
114, 98
               

               
Conread position:
               
107-517
               

               
Cow position:
               
chr13:34728467-34728879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
126, 115
               

               
Conread position:
               
107-517
               

               
Cow position:
               
chr13:41807139-41806740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
119, 78
               

               
Conread position:
               
108-455
               

               
Cow position:
               
chr13:38330004-38329654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
112, 86
               

               
Conread position:
               
108-517
               

               
Cow position:
               
chr13:20649615-20650018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
7, 52
               

               
Conread position:
               
114-515
               

               
Cow position:
               
chr13:17158498-17158906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
112, 244
               

               
Conread position:
               
120-517
               

               
Cow position:
               
chr13:2774479-2774099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
10, 101
               

               
Conread position:
               
120-517
               

               
Cow position:
               
chr13:21276216-21275827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
45, 143
               

               
Conread position:
               
121-517
               

               
Cow position:
               
chr13:1042597-1043001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 294
               

               
Conread position:
               
122-460
               

               
Cow position:
               
chr13:41360107-41359771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
102, 74
               

               
Conread position:
               
122-507
               

               
Cow position:
               
chr13:1767127-1766743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 214
               

               
Conread position:
               
128-516
               

               
Cow position:
               
chr13:32717520-32717896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
99, 42
               

               
Conread position:
               
131-517
               

               
Cow position:
               
chr13:17613695-17613309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
94, 178
               

               
Conread position:
               
135-515
               

               
Cow position:
               
chr13:8838653-8839020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
90, 27
               

               
Conread position:
               
139-517
               

               
Cow position:
               
chr13:12448647-12449020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
82, 125
               

               
Conread position:
               
140-455
               

               
Cow position:
               
chr13:48627082-48626784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
160, 78
               

               
Conread position:
               
146-517
               

               
Cow position:
               
chr13:4208484-4208850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
71, 87
               

               
Conread position:
               
154-464
               

               
Cow position:
               
chr13:6894412-6894111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
74, 19
               

               
Conread position:
               
154-512
               

               
Cow position:
               
chr13:9125998-9125638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
79, 13
               

               
Conread position:
               
156-412
               

               
Cow position:
               
chr13:21524749-21524495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
65, 78
               

               
Conread position:
               
156-463
               

               
Cow position:
               
chr13:15172085-15172391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
77, 69
               

               
Conread position:
               
156-517
               

               
Cow position:
               
chr13:21039279-21039635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
65, 70
               

               
Conread position:
               
164-464
               

               
Cow position:
               
chr13:55843800-55843498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
56, 98
               

               
Conread position:
               
171-501
               

               
Cow position:
               
chr13:548827-548487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
65, 50
               

               
Conread position:
               
175-473
               

               
Cow position:
               
chr13:13089328-13089036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
51, 169
               

               
Conread position:
               
178-515
               

               
Cow position:
               
chr13:54080502-54080845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
48, 101
               

               
Conread position:
               
194-517
               

               
Cow position:
               
chr13:6759504-6759828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
31, 68
               

               
Conread position:
               
199-443
               

               
Cow position:
               
chr13:51821624-51821850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
241-503
               

               
Cow position:
               
chr13:22276935-22277190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
242-462
               

               
Cow position:
               
chr13:5263053-5263264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
68, 106
               

               
Conread position:
               
244-517
               

               
Cow position:
               
chr13:15281705-15281972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
55, 60
               

               
Conread position:
               
246-517
               

               
Cow position:
               
chr13:20839796-20839534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
246, 83
               

               
Conread position:
               
251-429
               

               
Cow position:
               
chr13:46298417-46298593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
52, 45
               

               
Conread position:
               
252-448
               

               
Cow position:
               
chr13:10658514-10658324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
65, 12
               

               
Conread position:
               
252-497
               

               
Cow position:
               
chr13:24280469-24280233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
48, 53
               

               
Conread position:
               
252-516
               

               
Cow position:
               
chr13:30510282-30510025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
206, 94
               

               
Conread position:
               
253-447
               

               
Cow position:
               
chr13:44323124-44322938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
253-462
               

               
Cow position:
               
chr13:43184651-43184851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
253-469
               

               
Cow position:
               
chr13:54344998-54344784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
175, 87
               

               
Conread position:
               
253-516
               

               
Cow position:
               
chr13:25261586-25261843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
217, 93
               

               
Conread position:
               
253-517
               

               
Cow position:
               
chr13:8524400-8524650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
203, 47
               

               
Conread position:
               
253-517
               

               
Cow position:
               
chr13:17347029-17346774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
253-517
               

               
Cow position:
               
chr13:18172562-18172304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
251, 47
               

               
Conread position:
               
253-517
               

               
Cow position:
               
chr13:45022986-45023244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
239, 93
               

               
Conread position:
               
253-517
               

               
Cow position:
               
chr13:46284398-46284650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
163, 49
               

               
Conread position:
               
254-514
               

               
Cow position:
               
chr13:23586361-23586087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
8, 144
               

               
Conread position:
               
254-517
               

               
Cow position:
               
chr13:29814762-29814506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
115, 46
               

               
Conread position:
               
256-442
               

               
Cow position:
               
chr13:11460844-11460666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
256-456
               

               
Cow position:
               
chr13:11947509-11947712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
135, 90
               

               
Conread position:
               
256-456
               

               
Cow position:
               
chr13:14227146-14226958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
256-456
               

               
Cow position:
               
chr13:24539715-24539518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
256-456
               

               
Cow position:
               
chr13:38691321-38691518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
133, 90
               

               
Conread position:
               
256-456
               

               
Cow position:
               
chr13:46501523-46501328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
102, 45
               

               
Conread position:
               
256-467
               

               
Cow position:
               
chr13:50823337-50823535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
256-469
               

               
Cow position:
               
chr13:26261575-26261785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
149, 90
               

               
Conread position:
               
256-477
               

               
Cow position:
               
chr13:58823941-58823724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
203, 90
               

               
Conread position:
               
256-480
               

               
Cow position:
               
chr13:8607300-8607516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
18, 26
               

               
Conread position:
               
256-507
               

               
Cow position:
               
chr13:14378206-14377952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
146, 74
               

               
Conread position:
               
256-511
               

               
Cow position:
               
chr13:22886773-22887020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
45, 51
               

               
Conread position:
               
256-511
               

               
Cow position:
               
chr13:35653873-35654122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
210, 74
               

               
Conread position:
               
256-511
               

               
Cow position:
               
chr13:46458841-46458592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
225, 74
               

               
Conread position:
               
256-512
               

               
Cow position:
               
chr13:43194394-43194148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
256-513
               

               
Cow position:
               
chr13:57745880-57746133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
44, 49
               

               
Conread position:
               
256-514
               

               
Cow position:
               
chr13:33282233-33281975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
103, 131
               

               
Conread position:
               
256-514
               

               
Cow position:
               
chr13:55295406-55295652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
68, 73
               

               
Conread position:
               
256-514
               

               
Cow position:
               
chr13:55673986-55674237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
256-514
               

               
Cow position:
               
chr13:56148759-56148494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
139, 19
               

               
Conread position:
               
256-514
               

               
Cow position:
               
chr13:56160208-56160473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
139, 19
               

               
Conread position:
               
256-516
               

               
Cow position:
               
chr13:1780052-1779798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
131, 74
               

               
Conread position:
               
256-516
               

               
Cow position:
               
chr13:35718915-35719173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
77, 130
               

               
Conread position:
               
256-516
               

               
Cow position:
               
chr13:54095025-54094779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
217, 74
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr13:1959228-1958975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
44, 49
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr13:9665294-9665027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
54, 96
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr13:11767822-11768076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
18, 50
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr13:15945719-15945449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
44, 50
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr13:16024808-16024557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
105, 44
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr13:17439547-17439803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
200, 90
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr13:23166877-23167133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
201, 73
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr13:34995107-34995359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
44, 49
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr13:42200838-42200587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
149, 90
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr13:48037839-48037588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
149, 52
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr13:49848137-49847890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
216, 50
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr13:54702410-54702154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
236, 90
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr13:60487237-60487492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
44, 49
               

               
Conread position:
               
257-455
               

               
Cow position:
               
chr13:21210080-21209888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
155, 89
               

               
Conread position:
               
257-485
               

               
Cow position:
               
chr13:7262611-7262389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
202, 89
               

               
Conread position:
               
257-492
               

               
Cow position:
               
chr13:16343904-16343676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
218, 29
               

               
Conread position:
               
257-517
               

               
Cow position:
               
chr13:20466074-20466317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
258-513
               

               
Cow position:
               
chr13:4604511-4604263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
42, 22
               

               
Conread position:
               
261-511
               

               
Cow position:
               
chr13:8245118-8245359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
261-517
               

               
Cow position:
               
chr13:33631334-33631095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
274-473
               

               
Cow position:
               
chr13:13501418-13501613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
182, 71
               

               
Conread position:
               
274-514
               

               
Cow position:
               
chr13:4423279-4423518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
112, 43
               

               
Conread position:
               
275-482
               

               
Cow position:
               
chr13:2302638-2302841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
192, 29
               

               
Conread position:
               
275-517
               

               
Cow position:
               
chr13:15528828-15529066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
276-517
               

               
Cow position:
               
chr13:29631057-29630822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
103, 70
               

               
Conread position:
               
276-517
               

               
Cow position:
               
chr13:34761869-34761644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
196, 5
               

               
Conread position:
               
281-517
               

               
Cow position:
               
chr13:13577836-13578065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
126, 19
               

               
Conread position:
               
284-517
               

               
Cow position:
               
chr13:15991031-15991261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
95, 63
               

               
Conread position:
               
286-517
               

               
Cow position:
               
chr13:14771650-14771420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
97, 60
               

               
Conread position:
               
290-516
               

               
Cow position:
               
chr13:62474614-62474830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
184, 56
               

               
Conread position:
               
298-517
               

               
Cow position:
               
chr13:32657617-32657832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
315-503
               

               
Cow position:
               
chr13:39699968-39699786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
178, 31
               

               
Conread position:
               
315-513
               

               
Cow position:
               
chr13:34191271-34191470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 80
               

               
Conread position:
               
315-516
               

               
Cow position:
               
chr13:3796305-3796106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
94, 26
               

               
Conread position:
               
316-463
               

               
Cow position:
               
chr13:54864875-54865011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
318-517
               

               
Cow position:
               
chr13:22075836-22075637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
25, 42
               

               
Conread position:
               
319-513
               

               
Cow position:
               
chr13:46430145-46430337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
153, 11
               

               
Conread position:
               
321-517
               

               
Cow position:
               
chr13:41154874-41155066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
324-517
               

               
Cow position:
               
chr13:47188602-47188404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
325-517
               

               
Cow position:
               
chr13:50739320-50739132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
171, 23
               

               
Conread position:
               
331-517
               

               
Cow position:
               
chr13:20180565-20180381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
332-516
               

               
Cow position:
               
chr13:34118154-34118337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
95, 14
               

               
Conread position:
               
335-514
               

               
Cow position:
               
chr13:57325957-57326133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
123, 15
               

               
Conread position:
               
344-464
               

               
Cow position:
               
chr13:33975554-33975435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
347-517
               

               
Cow position:
               
chr13:12745805-12745639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
119, 38
               

               
Conread position:
               
366-514
               

               
Cow position:
               
chr13:16327773-16327631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
66, 19
               

               
Conread position:
               
373-514
               

               
Cow position:
               
chr13:54695805-54695947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
17, 122
               

               
Conread position:
               
379-517
               

               
Cow position:
               
chr13:33160891-33161028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
86, 109
               

               
Conread position:
               
396-514
               

               
Cow position:
               
chr13:54471098-54470980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
80, 96
               

               
Conread position:
               
403-517
               

               
Cow position:
               
chr13:33954950-33955062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               
Show alignments to all cow chromosomes.