Cow genome map

Conread name: rdbla0119_n20.y1

Conread position: 26-517
Cow position: chr25:1735776-1735305 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 32-328
Cow position: chr25:1951213-1951500 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 197
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 193, 27

Conread position: 32-464
Cow position: chr25:13332966-13333389 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 27

Conread position: 32-517
Cow position: chr25:8576239-8576709 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 27

Conread position: 33-298
Cow position: chr25:17992594-17992335 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 188
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 188, 26

Conread position: 33-393
Cow position: chr25:33255920-33256263 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 246
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 161, 26

Conread position: 33-429
Cow position: chr25:9395996-9396380 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 26

Conread position: 33-429
Cow position: chr25:24227798-24227402 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 15

Conread position: 33-442
Cow position: chr25:26238420-26238813 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 281
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 180, 26

Conread position: 33-455
Cow position: chr25:2135912-2136309 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 282
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 336, 26

Conread position: 33-455
Cow position: chr25:20394746-20395147 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 27

Conread position: 33-462
Cow position: chr25:33838935-33839342 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 291
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 188, 26

Conread position: 33-486
Cow position: chr25:12204016-12204455 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 308
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 143, 26

Conread position: 33-503
Cow position: chr25:394899-395355 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 26

Conread position: 33-511
Cow position: chr25:24136910-24136427 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 69

Conread position: 33-515
Cow position: chr25:36779043-36779514 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 323
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 200, 22

Conread position: 33-517
Cow position: chr25:14569909-14570390 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 26

Conread position: 33-517
Cow position: chr25:15368234-15368712 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 328
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 152, 26

Conread position: 33-517
Cow position: chr25:17658162-17658626 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 26

Conread position: 33-517
Cow position: chr25:23410205-23410683 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 26

Conread position: 33-517
Cow position: chr25:26654455-26654927 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 324
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 192, 24

Conread position: 33-517
Cow position: chr25:35347452-35347919 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 323
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 192, 27

Conread position: 34-344
Cow position: chr25:13132309-13132616 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 206
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 192, 25

Conread position: 34-359
Cow position: chr25:14960160-14959836 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 211
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 8, 26

Conread position: 34-382
Cow position: chr25:33025536-33025200 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 228
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 194, 22

Conread position: 34-442
Cow position: chr25:18448377-18448782 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 25

Conread position: 34-479
Cow position: chr25:10012507-10012065 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 25

Conread position: 34-506
Cow position: chr25:14225254-14224799 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 315
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 176, 25

Conread position: 34-516
Cow position: chr25:13569625-13569158 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 25

Conread position: 34-517
Cow position: chr25:14791306-14791772 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 320
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 199, 17

Conread position: 34-517
Cow position: chr25:18160858-18161303 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 324
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 429, 25

Conread position: 36-477
Cow position: chr25:21191039-21191464 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 295
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 189, 23

Conread position: 41-383
Cow position: chr25:9625365-9625698 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 230
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 185, 18

Conread position: 41-464
Cow position: chr25:27504618-27504213 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 19

Conread position: 41-497
Cow position: chr25:10748953-10748499 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 18

Conread position: 41-517
Cow position: chr25:20076047-20076512 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 13

Conread position: 48-508
Cow position: chr25:29215848-29215381 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 323
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 67, 12

Conread position: 51-516
Cow position: chr25:787838-788278 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 307
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 174, 8

Conread position: 59-512
Cow position: chr25:22910299-22909846 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 317
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 102, 53

Conread position: 60-412
Cow position: chr25:16866810-16867147 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 242
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 173, 26

Conread position: 61-517
Cow position: chr25:1837807-1838252 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 292
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 160, 198

Conread position: 84-342
Cow position: chr25:37469365-37469627 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 184
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 146, 223

Conread position: 96-511
Cow position: chr25:12235154-12234752 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 52

Conread position: 107-442
Cow position: chr25:26087125-26087463 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 88

Conread position: 107-443
Cow position: chr25:6470604-6470274 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 224
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 119, 23

Conread position: 107-491
Cow position: chr25:30319839-30319450 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 256
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 119, 198

Conread position: 107-509
Cow position: chr25:36081508-36081884 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 262
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 14, 0

Conread position: 107-514
Cow position: chr25:20069337-20069733 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 47

Conread position: 107-516
Cow position: chr25:5514620-5515028 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 273
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 148, 14

Conread position: 107-516
Cow position: chr25:6464418-6464015 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 276
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 118, 86

Conread position: 114-438
Cow position: chr25:10643689-10643367 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 212
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 112, 28

Conread position: 118-397
Cow position: chr25:36506638-36506373 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 191
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 84, 55

Conread position: 122-516
Cow position: chr25:12239510-12239133 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 0

Conread position: 129-517
Cow position: chr25:4680872-4681246 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 251
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 101, 62

Conread position: 130-517
Cow position: chr25:6683427-6683047 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 256
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 96, 42

Conread position: 132-517
Cow position: chr25:40957351-40956969 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 107

Conread position: 141-507
Cow position: chr25:10137750-10138099 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 249
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 15, 80

Conread position: 147-490
Cow position: chr25:15694634-15694969 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 231
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 76, 23

Conread position: 155-517
Cow position: chr25:20625271-20624916 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 194

Conread position: 157-515
Cow position: chr25:2126129-2126474 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 246
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 63, 78

Conread position: 171-490
Cow position: chr25:6886294-6885984 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 206
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 213, 53

Conread position: 180-473
Cow position: chr25:36026702-36026982 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 197
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 48, 24

Conread position: 249-514
Cow position: chr25:20023635-20023374 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 180
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 68, 14

Conread position: 251-430
Cow position: chr25:33260499-33260668 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 47, 54

Conread position: 253-455
Cow position: chr25:16001759-16001569 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 142
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 254-494
Cow position: chr25:14196617-14196853 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 159
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 8, 93

Conread position: 255-478
Cow position: chr25:33550268-33550486 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 151
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 200, 91

Conread position: 256-447
Cow position: chr25:20348622-20348809 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 128, 83

Conread position: 256-455
Cow position: chr25:19679106-19679299 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 151, 90

Conread position: 256-473
Cow position: chr25:25961728-25961935 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 159
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 56, 43

Conread position: 256-513
Cow position: chr25:30035312-30035560 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 176
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 44, 49

Conread position: 256-516
Cow position: chr25:9961414-9961159 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 179
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 47, 91

Conread position: 256-516
Cow position: chr25:21289104-21289360 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 172
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 128, 93

Conread position: 256-517
Cow position: chr25:8560633-8560884 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 196
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 200, 37

Conread position: 256-517
Cow position: chr25:24405972-24405718 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 0

Conread position: 256-517
Cow position: chr25:28188185-28187930 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 177
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 125, 90

Conread position: 256-517
Cow position: chr25:33691317-33691574 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 186
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 221, 90

Conread position: 257-465
Cow position: chr25:6474334-6474131 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 142
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 89, 0

Conread position: 257-514
Cow position: chr25:22575756-22575512 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 183
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 89, 0

Conread position: 258-464
Cow position: chr25:14467319-14467115 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 163
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 131, 23

Conread position: 258-515
Cow position: chr25:11131347-11131597 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 175
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 198, 71

Conread position: 262-490
Cow position: chr25:10218281-10218062 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 30, 47

Conread position: 262-515
Cow position: chr25:17365487-17365245 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 178
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 211, 50

Conread position: 262-517
Cow position: chr25:36033206-36033453 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 174
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 85, 0

Conread position: 269-454
Cow position: chr25:16007566-16007748 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 43, 19

Conread position: 283-504
Cow position: chr25:8512304-8512085 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 183, 63

Conread position: 286-517
Cow position: chr25:16714480-16714254 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 153
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 121, 0

Conread position: 315-456
Cow position: chr25:32606503-32606365 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 30, 0

Conread position: 315-515
Cow position: chr25:18905704-18905898 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 140
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 315-517
Cow position: chr25:26457861-26457662 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 77, 31

Conread position: 319-517
Cow position: chr25:12755669-12755472 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 67, 27

Conread position: 335-509
Cow position: chr25:10448869-10448705 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 166, 12

Conread position: 343-491
Cow position: chr25:36501393-36501246 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 133, 0

Conread position: 358-517
Cow position: chr25:16691523-16691680 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 32, 0

Conread position: 361-517
Cow position: chr25:34970330-34970480 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 366-517
Cow position: chr25:16560309-16560157 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 120
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 105, 0

Conread position: 366-517
Cow position: chr25:33112100-33111953 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 384-515
Cow position: chr25:14075187-14075317 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 90, 58

Show alignments to all cow chromosomes.