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Cow genome map

           
Conread name:
           
rdbla0119_n20.y1
        

               
Conread position:
               
3-456
               

               
Cow position:
               
chr6:3016999-3017446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 14
               

               
Conread position:
               
22-401
               

               
Cow position:
               
chr6:23889084-23888713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
199, 24
               

               
Conread position:
               
27-455
               

               
Cow position:
               
chr6:2546809-2547242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
58, 28
               

               
Conread position:
               
30-477
               

               
Cow position:
               
chr6:46292740-46292329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
173, 56
               

               
Conread position:
               
31-517
               

               
Cow position:
               
chr6:6596174-6596633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 28
               

               
Conread position:
               
31-517
               

               
Cow position:
               
chr6:18049438-18048967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 28
               

               
Conread position:
               
32-394
               

               
Cow position:
               
chr6:31688798-31688448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
89, 27
               

               
Conread position:
               
32-513
               

               
Cow position:
               
chr6:16737610-16738072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
201, 9
               

               
Conread position:
               
32-516
               

               
Cow position:
               
chr6:52556885-52556424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 27
               

               
Conread position:
               
32-516
               

               
Cow position:
               
chr6:65871500-65871946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
32-517
               

               
Cow position:
               
chr6:36470979-36470505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 29
               

               
Conread position:
               
33-297
               

               
Cow position:
               
chr6:38233582-38233830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
164, 13
               

               
Conread position:
               
33-340
               

               
Cow position:
               
chr6:50527242-50527545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 26
               

               
Conread position:
               
33-348
               

               
Cow position:
               
chr6:4155956-4155639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
159, 30
               

               
Conread position:
               
33-381
               

               
Cow position:
               
chr6:38988086-38987750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
192, 26
               

               
Conread position:
               
33-382
               

               
Cow position:
               
chr6:6340743-6341082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
33-384
               

               
Cow position:
               
chr6:31953093-31952744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
47, 28
               

               
Conread position:
               
33-392
               

               
Cow position:
               
chr6:5501207-5500852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
188, 26
               

               
Conread position:
               
33-393
               

               
Cow position:
               
chr6:16518285-16517921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 22
               

               
Conread position:
               
33-397
               

               
Cow position:
               
chr6:12515740-12516091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
151, 26
               

               
Conread position:
               
33-406
               

               
Cow position:
               
chr6:40300277-40299907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
187, 18
               

               
Conread position:
               
33-414
               

               
Cow position:
               
chr6:7253849-7253465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
190, 26
               

               
Conread position:
               
33-417
               

               
Cow position:
               
chr6:26654853-26655222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
15, 23
               

               
Conread position:
               
33-429
               

               
Cow position:
               
chr6:24030964-24031351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
104, 26
               

               
Conread position:
               
33-437
               

               
Cow position:
               
chr6:41557067-41557457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
33-438
               

               
Cow position:
               
chr6:65862275-65862670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
204, 26
               

               
Conread position:
               
33-455
               

               
Cow position:
               
chr6:32211036-32210631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
162, 26
               

               
Conread position:
               
33-456
               

               
Cow position:
               
chr6:54357792-54357359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
97, 26
               

               
Conread position:
               
33-462
               

               
Cow position:
               
chr6:15046505-15046076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
82, 26
               

               
Conread position:
               
33-468
               

               
Cow position:
               
chr6:10332519-10332080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 26
               

               
Conread position:
               
33-476
               

               
Cow position:
               
chr6:46570715-46571136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
190, 26
               

               
Conread position:
               
33-490
               

               
Cow position:
               
chr6:3979072-3978633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
291, 26
               

               
Conread position:
               
33-499
               

               
Cow position:
               
chr6:48807408-48806954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 56
               

               
Conread position:
               
33-514
               

               
Cow position:
               
chr6:12387736-12387273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 26
               

               
Conread position:
               
33-514
               

               
Cow position:
               
chr6:31636105-31635634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 26
               

               
Conread position:
               
33-514
               

               
Cow position:
               
chr6:55842583-55842105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 27
               

               
Conread position:
               
33-515
               

               
Cow position:
               
chr6:45617856-45617378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 26
               

               
Conread position:
               
33-515
               

               
Cow position:
               
chr6:47026066-47026532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
194, 27
               

               
Conread position:
               
33-515
               

               
Cow position:
               
chr6:60931313-60930843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 26
               

               
Conread position:
               
33-516
               

               
Cow position:
               
chr6:4468353-4468824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
131, 12
               

               
Conread position:
               
33-516
               

               
Cow position:
               
chr6:23987150-23986689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 26
               

               
Conread position:
               
33-516
               

               
Cow position:
               
chr6:47540114-47540587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 26
               

               
Conread position:
               
33-516
               

               
Cow position:
               
chr6:48946781-48946299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
192, 31
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr6:828095-827646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 26
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr6:5302809-5302362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
193, 29
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr6:11169300-11169757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
186, 23
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr6:16625530-16626000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 28
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr6:24961756-24962200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr6:25783896-25784369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 22
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr6:36652013-36652479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
442, 29
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr6:44098677-44099144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 26
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr6:44372359-44371888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 26
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr6:58073626-58074107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 26
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr6:63197585-63197106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 26
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chr6:64431536-64431994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
200, 26
               

               
Conread position:
               
34-393
               

               
Cow position:
               
chr6:47848116-47847754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
81, 25
               

               
Conread position:
               
34-429
               

               
Cow position:
               
chr6:46666697-46667083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
187, 21
               

               
Conread position:
               
34-444
               

               
Cow position:
               
chr6:4681340-4681742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
106, 37
               

               
Conread position:
               
34-450
               

               
Cow position:
               
chr6:49626945-49627349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
107, 25
               

               
Conread position:
               
34-455
               

               
Cow position:
               
chr6:65870616-65871027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
185, 28
               

               
Conread position:
               
34-516
               

               
Cow position:
               
chr6:14839435-14838969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
187, 25
               

               
Conread position:
               
34-517
               

               
Cow position:
               
chr6:24623406-24622916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 26
               

               
Conread position:
               
34-517
               

               
Cow position:
               
chr6:52478852-52478354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
186, 25
               

               
Conread position:
               
35-389
               

               
Cow position:
               
chr6:22804781-22804432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
189, 25
               

               
Conread position:
               
35-438
               

               
Cow position:
               
chr6:64426779-64427169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 24
               

               
Conread position:
               
35-443
               

               
Cow position:
               
chr6:41824237-41823836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
186, 24
               

               
Conread position:
               
35-476
               

               
Cow position:
               
chr6:12550859-12551286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
198, 19
               

               
Conread position:
               
35-483
               

               
Cow position:
               
chr6:28811410-28810967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 16
               

               
Conread position:
               
35-491
               

               
Cow position:
               
chr6:17414862-17414417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 24
               

               
Conread position:
               
35-514
               

               
Cow position:
               
chr6:51834994-51835456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
188, 24
               

               
Conread position:
               
35-517
               

               
Cow position:
               
chr6:606854-607320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
204, 24
               

               
Conread position:
               
35-517
               

               
Cow position:
               
chr6:6944094-6943622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 56
               

               
Conread position:
               
35-517
               

               
Cow position:
               
chr6:8636867-8637335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
193, 24
               

               
Conread position:
               
35-517
               

               
Cow position:
               
chr6:17090177-17090657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
35-517
               

               
Cow position:
               
chr6:28084432-28083958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 52
               

               
Conread position:
               
35-517
               

               
Cow position:
               
chr6:46465419-46465878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
198, 24
               

               
Conread position:
               
36-460
               

               
Cow position:
               
chr6:2012615-2013021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
93, 24
               

               
Conread position:
               
36-500
               

               
Cow position:
               
chr6:33852196-33851754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 15
               

               
Conread position:
               
36-517
               

               
Cow position:
               
chr6:24583650-24583164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 23
               

               
Conread position:
               
36-517
               

               
Cow position:
               
chr6:33984538-33985036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
129, 23
               

               
Conread position:
               
38-454
               

               
Cow position:
               
chr6:49399023-49398618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
144, 21
               

               
Conread position:
               
43-513
               

               
Cow position:
               
chr6:29077325-29077788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
177, 17
               

               
Conread position:
               
44-416
               

               
Cow position:
               
chr6:20056226-20056594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
74, 11
               

               
Conread position:
               
44-517
               

               
Cow position:
               
chr6:55474833-55475312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 196
               

               
Conread position:
               
49-513
               

               
Cow position:
               
chr6:44510835-44511299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 15
               

               
Conread position:
               
50-517
               

               
Cow position:
               
chr6:19427050-19427512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 12
               

               
Conread position:
               
58-298
               

               
Cow position:
               
chr6:1866294-1866532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
167, 28
               

               
Conread position:
               
59-512
               

               
Cow position:
               
chr6:13592337-13592761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 27
               

               
Conread position:
               
61-514
               

               
Cow position:
               
chr6:11160407-11159949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
160, 25
               

               
Conread position:
               
84-513
               

               
Cow position:
               
chr6:24649485-24649913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 28
               

               
Conread position:
               
96-462
               

               
Cow position:
               
chr6:63047219-63047583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
128, 5
               

               
Conread position:
               
101-413
               

               
Cow position:
               
chr6:68297935-68297628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
28, 124
               

               
Conread position:
               
101-517
               

               
Cow position:
               
chr6:8318519-8318103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 110
               

               
Conread position:
               
102-516
               

               
Cow position:
               
chr6:54806871-54807283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 12
               

               
Conread position:
               
102-517
               

               
Cow position:
               
chr6:15242500-15242890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
19, 94
               

               
Conread position:
               
102-517
               

               
Cow position:
               
chr6:61631966-61631552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
118, 162
               

               
Conread position:
               
105-514
               

               
Cow position:
               
chr6:52002019-52002414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
10, 205
               

               
Conread position:
               
106-447
               

               
Cow position:
               
chr6:35842312-35842644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
127, 119
               

               
Conread position:
               
107-422
               

               
Cow position:
               
chr6:21004308-21004638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
116, 252
               

               
Conread position:
               
107-443
               

               
Cow position:
               
chr6:18080864-18080522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
22, 129
               

               
Conread position:
               
113-460
               

               
Cow position:
               
chr6:642935-642563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
49, 165
               

               
Conread position:
               
114-417
               

               
Cow position:
               
chr6:57474039-57474340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
111, 191
               

               
Conread position:
               
115-516
               

               
Cow position:
               
chr6:54867179-54867573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
105, 48
               

               
Conread position:
               
118-512
               

               
Cow position:
               
chr6:16634546-16634169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
370, 81
               

               
Conread position:
               
120-475
               

               
Cow position:
               
chr6:444992-445338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
271, 105
               

               
Conread position:
               
120-490
               

               
Cow position:
               
chr6:8562381-8562751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
113, 231
               

               
Conread position:
               
120-500
               

               
Cow position:
               
chr6:43345789-43345401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
231, 136
               

               
Conread position:
               
123-488
               

               
Cow position:
               
chr6:60152704-60153066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
110, 218
               

               
Conread position:
               
123-517
               

               
Cow position:
               
chr6:42693031-42693436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 292
               

               
Conread position:
               
128-344
               

               
Cow position:
               
chr6:61180758-61180542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
43, 105
               

               
Conread position:
               
133-517
               

               
Cow position:
               
chr6:9008929-9008555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
106, 91
               

               
Conread position:
               
137-513
               

               
Cow position:
               
chr6:47625276-47624908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 30
               

               
Conread position:
               
138-476
               

               
Cow position:
               
chr6:20255697-20255381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
75, 87
               

               
Conread position:
               
140-451
               

               
Cow position:
               
chr6:35703514-35703195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
84, 59
               

               
Conread position:
               
142-435
               

               
Cow position:
               
chr6:12500544-12500838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
79, 212
               

               
Conread position:
               
142-493
               

               
Cow position:
               
chr6:30285376-30285724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
81, 210
               

               
Conread position:
               
142-500
               

               
Cow position:
               
chr6:12934452-12934094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
83, 71
               

               
Conread position:
               
145-453
               

               
Cow position:
               
chr6:21587731-21587422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
88, 209
               

               
Conread position:
               
150-517
               

               
Cow position:
               
chr6:58315742-58316106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
89, 82
               

               
Conread position:
               
166-516
               

               
Cow position:
               
chr6:62479454-62479104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
67, 184
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr6:57119208-57118886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
46, 111
               

               
Conread position:
               
188-516
               

               
Cow position:
               
chr6:24545363-24545670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
284, 11
               

               
Conread position:
               
194-512
               

               
Cow position:
               
chr6:61515458-61515138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
27, 154
               

               
Conread position:
               
232-442
               

               
Cow position:
               
chr6:16220245-16220039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
7, 25
               

               
Conread position:
               
244-515
               

               
Cow position:
               
chr6:2366314-2366053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
80, 87
               

               
Conread position:
               
246-517
               

               
Cow position:
               
chr6:32276727-32277003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
66, 18
               

               
Conread position:
               
247-517
               

               
Cow position:
               
chr6:3545501-3545752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
228, 61
               

               
Conread position:
               
250-515
               

               
Cow position:
               
chr6:12652006-12652263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
144, 82
               

               
Conread position:
               
250-517
               

               
Cow position:
               
chr6:61137169-61137432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
22, 97
               

               
Conread position:
               
251-517
               

               
Cow position:
               
chr6:37199744-37199470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
44, 101
               

               
Conread position:
               
252-438
               

               
Cow position:
               
chr6:55366519-55366336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
253-449
               

               
Cow position:
               
chr6:10237174-10237357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
253-455
               

               
Cow position:
               
chr6:11789803-11789999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
86, 44
               

               
Conread position:
               
253-486
               

               
Cow position:
               
chr6:52401663-52401889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
220, 71
               

               
Conread position:
               
253-492
               

               
Cow position:
               
chr6:38895270-38895047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
235, 20
               

               
Conread position:
               
253-517
               

               
Cow position:
               
chr6:6367858-6367609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
220, 51
               

               
Conread position:
               
253-517
               

               
Cow position:
               
chr6:47327264-47327011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
254-516
               

               
Cow position:
               
chr6:56902668-56902920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
255-463
               

               
Cow position:
               
chr6:1891041-1890838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
46, 51
               

               
Conread position:
               
255-464
               

               
Cow position:
               
chr6:57680630-57680423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
51, 45
               

               
Conread position:
               
256-455
               

               
Cow position:
               
chr6:55282484-55282290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
256-463
               

               
Cow position:
               
chr6:15923193-15922993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
200, 74
               

               
Conread position:
               
256-463
               

               
Cow position:
               
chr6:33276845-33277049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
127, 44
               

               
Conread position:
               
256-470
               

               
Cow position:
               
chr6:2582680-2582883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
256-490
               

               
Cow position:
               
chr6:23248157-23247933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
256-493
               

               
Cow position:
               
chr6:61113556-61113790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
127, 86
               

               
Conread position:
               
256-496
               

               
Cow position:
               
chr6:6098476-6098243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
222, 80
               

               
Conread position:
               
256-500
               

               
Cow position:
               
chr6:52412660-52412902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
138, 90
               

               
Conread position:
               
256-500
               

               
Cow position:
               
chr6:58732508-58732262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
68, 91
               

               
Conread position:
               
256-502
               

               
Cow position:
               
chr6:44377071-44377314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
202, 55
               

               
Conread position:
               
256-508
               

               
Cow position:
               
chr6:48344134-48344381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
214, 90
               

               
Conread position:
               
256-509
               

               
Cow position:
               
chr6:20157130-20157382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
47, 91
               

               
Conread position:
               
256-512
               

               
Cow position:
               
chr6:14658411-14658654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
256-512
               

               
Cow position:
               
chr6:48573077-48572828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
68, 19
               

               
Conread position:
               
256-513
               

               
Cow position:
               
chr6:5609634-5609392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
236, 74
               

               
Conread position:
               
256-513
               

               
Cow position:
               
chr6:7190313-7190066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
256-513
               

               
Cow position:
               
chr6:21542126-21542376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
230, 73
               

               
Conread position:
               
256-513
               

               
Cow position:
               
chr6:31425757-31425507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
96, 90
               

               
Conread position:
               
256-513
               

               
Cow position:
               
chr6:51191619-51191883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
44, 135
               

               
Conread position:
               
256-513
               

               
Cow position:
               
chr6:55936170-55935924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
44, 49
               

               
Conread position:
               
256-514
               

               
Cow position:
               
chr6:35415716-35415461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
56, 28
               

               
Conread position:
               
256-516
               

               
Cow position:
               
chr6:6731070-6731321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
246, 61
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr6:3374764-3374508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
165, 30
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr6:6400754-6401011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
68, 91
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr6:6995141-6994894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
28, 77
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr6:7173958-7173692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
45, 105
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr6:7824567-7824823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 48
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr6:9026323-9026581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
45, 60
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr6:15782719-15782457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
216, 90
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr6:22968882-22969140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 99
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr6:24223355-24223097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
24, 75
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr6:33918045-33917783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
178, 90
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr6:38207690-38207433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
61, 83
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr6:38641304-38641554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
236, 76
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr6:50271288-50271048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr6:54144107-54144364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
217, 90
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr6:54490934-54490676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
127, 74
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chr6:56041816-56041566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
44, 50
               

               
Conread position:
               
257-455
               

               
Cow position:
               
chr6:6460346-6460540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
257-456
               

               
Cow position:
               
chr6:20379658-20379468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
41, 48
               

               
Conread position:
               
257-464
               

               
Cow position:
               
chr6:48425514-48425313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
146, 62
               

               
Conread position:
               
257-507
               

               
Cow position:
               
chr6:1907347-1907591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
216, 89
               

               
Conread position:
               
257-509
               

               
Cow position:
               
chr6:415899-416155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
15, 91
               

               
Conread position:
               
257-513
               

               
Cow position:
               
chr6:30315253-30314996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
43, 48
               

               
Conread position:
               
257-517
               

               
Cow position:
               
chr6:56376543-56376291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
209, 67
               

               
Conread position:
               
257-517
               

               
Cow position:
               
chr6:60239585-60239338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
258-514
               

               
Cow position:
               
chr6:28164603-28164855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
161, 50
               

               
Conread position:
               
258-514
               

               
Cow position:
               
chr6:41264931-41265175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
258-517
               

               
Cow position:
               
chr6:10254048-10254298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
190, 23
               

               
Conread position:
               
258-517
               

               
Cow position:
               
chr6:42566676-42566913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
258-517
               

               
Cow position:
               
chr6:64436522-64436269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
132, 51
               

               
Conread position:
               
260-425
               

               
Cow position:
               
chr6:10705960-10705801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
41, 53
               

               
Conread position:
               
261-438
               

               
Cow position:
               
chr6:30128514-30128339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 44
               

               
Conread position:
               
261-463
               

               
Cow position:
               
chr6:4079572-4079382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
261-516
               

               
Cow position:
               
chr6:8788226-8787981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
262-479
               

               
Cow position:
               
chr6:50577332-50577545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
45, 36
               

               
Conread position:
               
265-498
               

               
Cow position:
               
chr6:28278500-28278738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
41, 33
               

               
Conread position:
               
265-517
               

               
Cow position:
               
chr6:32677265-32677025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
210, 80
               

               
Conread position:
               
266-438
               

               
Cow position:
               
chr6:1703630-1703798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
37, 33
               

               
Conread position:
               
270-454
               

               
Cow position:
               
chr6:67436808-67436985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
273-517
               

               
Cow position:
               
chr6:47574728-47574963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
134, 57
               

               
Conread position:
               
274-515
               

               
Cow position:
               
chr6:12964271-12964513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
26, 31
               

               
Conread position:
               
274-517
               

               
Cow position:
               
chr6:42617703-42617942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
27, 57
               

               
Conread position:
               
275-517
               

               
Cow position:
               
chr6:65947263-65947016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
128, 73
               

               
Conread position:
               
283-453
               

               
Cow position:
               
chr6:59249848-59249688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
17, 22
               

               
Conread position:
               
283-515
               

               
Cow position:
               
chr6:30474156-30474378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
283-516
               

               
Cow position:
               
chr6:37739019-37739238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
112, 47
               

               
Conread position:
               
284-517
               

               
Cow position:
               
chr6:50318222-50317983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
156, 62
               

               
Conread position:
               
292-514
               

               
Cow position:
               
chr6:47204315-47204534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
127, 46
               

               
Conread position:
               
302-517
               

               
Cow position:
               
chr6:53673715-53673921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
112, 24
               

               
Conread position:
               
315-455
               

               
Cow position:
               
chr6:24468532-24468394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
92, 31
               

               
Conread position:
               
315-498
               

               
Cow position:
               
chr6:47616748-47616567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
143, 31
               

               
Conread position:
               
315-514
               

               
Cow position:
               
chr6:30160184-30160377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
141, 31
               

               
Conread position:
               
315-517
               

               
Cow position:
               
chr6:51840131-51840336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
96, 32
               

               
Conread position:
               
315-517
               

               
Cow position:
               
chr6:55892627-55892825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
326-513
               

               
Cow position:
               
chr6:38453910-38453717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
61, 20
               

               
Conread position:
               
331-517
               

               
Cow position:
               
chr6:18582933-18582750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
80, 15
               

               
Conread position:
               
353-514
               

               
Cow position:
               
chr6:61218133-61217970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
77, 32
               

               
Conread position:
               
356-517
               

               
Cow position:
               
chr6:59588507-59588346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
116, 29
               

               
Conread position:
               
357-514
               

               
Cow position:
               
chr6:4164268-4164112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
58, 30
               

               
Conread position:
               
361-517
               

               
Cow position:
               
chr6:56860454-56860604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
373-514
               

               
Cow position:
               
chr6:24557796-24557939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
387-517
               

               
Cow position:
               
chr6:32809205-32809329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
387-517
               

               
Cow position:
               
chr6:49800119-49800250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
388-515
               

               
Cow position:
               
chr6:54479222-54479095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
93, 100
               

               
Conread position:
               
388-517
               

               
Cow position:
               
chr6:59633064-59633194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
74, 82
               

               
Conread position:
               
400-517
               

               
Cow position:
               
chr6:7835858-7835976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               
Show alignments to all cow chromosomes.