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Cow genome map

           
Conread name:
           
rdbla0119_n20.y1
        

               
Conread position:
               
3-381
               

               
Cow position:
               
chrX:9970469-9970834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
297, 56
               

               
Conread position:
               
6-517
               

               
Cow position:
               
chrX:42171751-42171250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
29, 50
               

               
Conread position:
               
26-514
               

               
Cow position:
               
chrX:1616488-1616000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 33
               

               
Conread position:
               
28-499
               

               
Cow position:
               
chrX:33827467-33826988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 32
               

               
Conread position:
               
28-517
               

               
Cow position:
               
chrX:13785807-13785316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
187, 31
               

               
Conread position:
               
30-481
               

               
Cow position:
               
chrX:45501720-45502155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
32-390
               

               
Cow position:
               
chrX:22330001-22329649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
207, 27
               

               
Conread position:
               
32-391
               

               
Cow position:
               
chrX:4630125-4629762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
107, 27
               

               
Conread position:
               
32-463
               

               
Cow position:
               
chrX:36692814-36693228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
77, 25
               

               
Conread position:
               
32-515
               

               
Cow position:
               
chrX:1810584-1810118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
188, 27
               

               
Conread position:
               
32-517
               

               
Cow position:
               
chrX:23414812-23414324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 9
               

               
Conread position:
               
33-336
               

               
Cow position:
               
chrX:20504337-20504635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
188, 26
               

               
Conread position:
               
33-344
               

               
Cow position:
               
chrX:20957591-20957894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
200, 26
               

               
Conread position:
               
33-344
               

               
Cow position:
               
chrX:21862094-21861793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
195, 26
               

               
Conread position:
               
33-356
               

               
Cow position:
               
chrX:12290313-12290627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
193, 27
               

               
Conread position:
               
33-443
               

               
Cow position:
               
chrX:12249377-12249774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 26
               

               
Conread position:
               
33-449
               

               
Cow position:
               
chrX:21319268-21319655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
191, 26
               

               
Conread position:
               
33-451
               

               
Cow position:
               
chrX:24200771-24201167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 26
               

               
Conread position:
               
33-453
               

               
Cow position:
               
chrX:17743646-17744047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 26
               

               
Conread position:
               
33-463
               

               
Cow position:
               
chrX:42086439-42086849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
200, 22
               

               
Conread position:
               
33-468
               

               
Cow position:
               
chrX:15486049-15485627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
200, 26
               

               
Conread position:
               
33-477
               

               
Cow position:
               
chrX:34441871-34441444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 26
               

               
Conread position:
               
33-479
               

               
Cow position:
               
chrX:35609562-35609996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 26
               

               
Conread position:
               
33-489
               

               
Cow position:
               
chrX:36840437-36840889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 26
               

               
Conread position:
               
33-493
               

               
Cow position:
               
chrX:1055816-1055372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
160, 18
               

               
Conread position:
               
33-501
               

               
Cow position:
               
chrX:14908587-14909046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 26
               

               
Conread position:
               
33-509
               

               
Cow position:
               
chrX:38072191-38071728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 26
               

               
Conread position:
               
33-510
               

               
Cow position:
               
chrX:38439052-38439518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 26
               

               
Conread position:
               
33-513
               

               
Cow position:
               
chrX:12115617-12116087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
193, 27
               

               
Conread position:
               
33-513
               

               
Cow position:
               
chrX:33803445-33802963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 26
               

               
Conread position:
               
33-516
               

               
Cow position:
               
chrX:23564221-23563748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 27
               

               
Conread position:
               
33-516
               

               
Cow position:
               
chrX:39546403-39545932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 26
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chrX:917801-917324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 62
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chrX:3154679-3154198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 26
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chrX:15329229-15329687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 26
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chrX:17964940-17964478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chrX:20801347-20801813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 26
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chrX:26441204-26440739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
191, 26
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chrX:28111070-28111554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 26
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chrX:29289152-29289622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
200, 26
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chrX:35223878-35224340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 26
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chrX:38963689-38964152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 26
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chrX:42462172-42461700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 22
               

               
Conread position:
               
33-517
               

               
Cow position:
               
chrX:43648182-43647700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
82, 26
               

               
Conread position:
               
34-377
               

               
Cow position:
               
chrX:33822674-33823011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
81, 25
               

               
Conread position:
               
34-417
               

               
Cow position:
               
chrX:6012531-6012156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
34-455
               

               
Cow position:
               
chrX:11655654-11656076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
121, 25
               

               
Conread position:
               
34-455
               

               
Cow position:
               
chrX:38094948-38094537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 25
               

               
Conread position:
               
34-464
               

               
Cow position:
               
chrX:160463-160039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 25
               

               
Conread position:
               
34-501
               

               
Cow position:
               
chrX:22812639-22813096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 25
               

               
Conread position:
               
34-516
               

               
Cow position:
               
chrX:31261060-31260576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 25
               

               
Conread position:
               
34-516
               

               
Cow position:
               
chrX:38936268-38936743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 25
               

               
Conread position:
               
34-517
               

               
Cow position:
               
chrX:3654186-3654652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
189, 25
               

               
Conread position:
               
34-517
               

               
Cow position:
               
chrX:21592863-21593331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 25
               

               
Conread position:
               
34-517
               

               
Cow position:
               
chrX:30162584-30163044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 13
               

               
Conread position:
               
35-389
               

               
Cow position:
               
chrX:34840193-34839858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
264, 24
               

               
Conread position:
               
35-455
               

               
Cow position:
               
chrX:37231989-37232397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 20
               

               
Conread position:
               
35-479
               

               
Cow position:
               
chrX:35388329-35387893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 24
               

               
Conread position:
               
35-495
               

               
Cow position:
               
chrX:37760431-37760909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 24
               

               
Conread position:
               
35-509
               

               
Cow position:
               
chrX:27516114-27516568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
191, 16
               

               
Conread position:
               
35-513
               

               
Cow position:
               
chrX:7571481-7571945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 24
               

               
Conread position:
               
35-517
               

               
Cow position:
               
chrX:630730-630265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 24
               

               
Conread position:
               
35-517
               

               
Cow position:
               
chrX:26626116-26625627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 55
               

               
Conread position:
               
35-517
               

               
Cow position:
               
chrX:40269054-40269535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 24
               

               
Conread position:
               
39-455
               

               
Cow position:
               
chrX:13868279-13868687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
194, 20
               

               
Conread position:
               
41-460
               

               
Cow position:
               
chrX:27446274-27446685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
184, 45
               

               
Conread position:
               
41-517
               

               
Cow position:
               
chrX:32743122-32743582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 18
               

               
Conread position:
               
43-303
               

               
Cow position:
               
chrX:20976481-20976224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
134, 16
               

               
Conread position:
               
47-517
               

               
Cow position:
               
chrX:8796841-8797300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 12
               

               
Conread position:
               
47-517
               

               
Cow position:
               
chrX:20888054-20887597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
169, 12
               

               
Conread position:
               
49-428
               

               
Cow position:
               
chrX:3161433-3161055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 64
               

               
Conread position:
               
50-517
               

               
Cow position:
               
chrX:2300517-2300969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 6
               

               
Conread position:
               
58-516
               

               
Cow position:
               
chrX:42994214-42994656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 28
               

               
Conread position:
               
58-517
               

               
Cow position:
               
chrX:10831912-10831446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 28
               

               
Conread position:
               
59-456
               

               
Cow position:
               
chrX:38668039-38667633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
166, 28
               

               
Conread position:
               
61-517
               

               
Cow position:
               
chrX:28929454-28929886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 25
               

               
Conread position:
               
65-515
               

               
Cow position:
               
chrX:32309701-32310147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 21
               

               
Conread position:
               
69-503
               

               
Cow position:
               
chrX:25419553-25419124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 16
               

               
Conread position:
               
70-472
               

               
Cow position:
               
chrX:40540530-40540138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
150, 16
               

               
Conread position:
               
70-517
               

               
Cow position:
               
chrX:39700825-39701268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
162, 16
               

               
Conread position:
               
75-506
               

               
Cow position:
               
chrX:17271679-17271248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 37
               

               
Conread position:
               
92-517
               

               
Cow position:
               
chrX:40693138-40692707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
21, 238
               

               
Conread position:
               
94-382
               

               
Cow position:
               
chrX:20653018-20653312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
21, 11
               

               
Conread position:
               
96-512
               

               
Cow position:
               
chrX:11981750-11982178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
125, 18
               

               
Conread position:
               
98-465
               

               
Cow position:
               
chrX:37299225-37299602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
78, 19
               

               
Conread position:
               
98-517
               

               
Cow position:
               
chrX:2786916-2786512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 178
               

               
Conread position:
               
99-516
               

               
Cow position:
               
chrX:11561773-11562197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
16, 39
               

               
Conread position:
               
104-517
               

               
Cow position:
               
chrX:9252537-9252119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
119, 11
               

               
Conread position:
               
104-517
               

               
Cow position:
               
chrX:34401635-34402044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
121, 10
               

               
Conread position:
               
105-477
               

               
Cow position:
               
chrX:24886854-24886483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
244, 78
               

               
Conread position:
               
106-517
               

               
Cow position:
               
chrX:20697965-20697565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
125, 151
               

               
Conread position:
               
107-388
               

               
Cow position:
               
chrX:31058799-31059066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
18, 44
               

               
Conread position:
               
107-393
               

               
Cow position:
               
chrX:25283501-25283226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
107-442
               

               
Cow position:
               
chrX:11806377-11806042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
115, 76
               

               
Conread position:
               
107-444
               

               
Cow position:
               
chrX:7695403-7695716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
126, 72
               

               
Conread position:
               
107-460
               

               
Cow position:
               
chrX:15147542-15147198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
126, 14
               

               
Conread position:
               
107-509
               

               
Cow position:
               
chrX:41743552-41743950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 227
               

               
Conread position:
               
107-516
               

               
Cow position:
               
chrX:5871952-5872360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
71, 116
               

               
Conread position:
               
107-516
               

               
Cow position:
               
chrX:47343931-47344339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
73, 245
               

               
Conread position:
               
107-517
               

               
Cow position:
               
chrX:31250031-31250432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
102, 66
               

               
Conread position:
               
108-517
               

               
Cow position:
               
chrX:42247536-42247138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
348, 112
               

               
Conread position:
               
110-517
               

               
Cow position:
               
chrX:28787012-28787397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
5, 39
               

               
Conread position:
               
113-517
               

               
Cow position:
               
chrX:13912724-13913119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
112, 222
               

               
Conread position:
               
114-444
               

               
Cow position:
               
chrX:44731246-44731571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
184, 141
               

               
Conread position:
               
114-517
               

               
Cow position:
               
chrX:36010246-36009868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
112, 164
               

               
Conread position:
               
120-461
               

               
Cow position:
               
chrX:25848567-25848902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
106, 232
               

               
Conread position:
               
120-515
               

               
Cow position:
               
chrX:10412334-10411944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 18
               

               
Conread position:
               
120-517
               

               
Cow position:
               
chrX:25232238-25232637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 146
               

               
Conread position:
               
121-488
               

               
Cow position:
               
chrX:32171229-32170871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
105, 184
               

               
Conread position:
               
121-511
               

               
Cow position:
               
chrX:48248474-48248862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
22, 220
               

               
Conread position:
               
121-517
               

               
Cow position:
               
chrX:31436133-31436518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
100, 186
               

               
Conread position:
               
127-517
               

               
Cow position:
               
chrX:36778064-36778452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
95, 226
               

               
Conread position:
               
130-453
               

               
Cow position:
               
chrX:43527164-43527492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
13, 106
               

               
Conread position:
               
130-495
               

               
Cow position:
               
chrX:40558014-40557655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
91, 132
               

               
Conread position:
               
133-512
               

               
Cow position:
               
chrX:38007103-38006727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
100, 170
               

               
Conread position:
               
134-455
               

               
Cow position:
               
chrX:6234768-6234468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
138-517
               

               
Cow position:
               
chrX:5638498-5638125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
95, 75
               

               
Conread position:
               
142-517
               

               
Cow position:
               
chrX:25337851-25338232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 213
               

               
Conread position:
               
145-517
               

               
Cow position:
               
chrX:25713486-25713840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
111, 47
               

               
Conread position:
               
146-514
               

               
Cow position:
               
chrX:9161266-9161622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
87, 182
               

               
Conread position:
               
147-383
               

               
Cow position:
               
chrX:26619682-26619447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
74, 21
               

               
Conread position:
               
147-517
               

               
Cow position:
               
chrX:33639647-33640019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
76, 40
               

               
Conread position:
               
151-517
               

               
Cow position:
               
chrX:20376653-20377015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 70
               

               
Conread position:
               
158-455
               

               
Cow position:
               
chrX:19188626-19188922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
68, 193
               

               
Conread position:
               
159-516
               

               
Cow position:
               
chrX:14924691-14925043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
67, 129
               

               
Conread position:
               
165-502
               

               
Cow position:
               
chrX:5047200-5046866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
60, 115
               

               
Conread position:
               
165-517
               

               
Cow position:
               
chrX:11314081-11313736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
63, 170
               

               
Conread position:
               
168-454
               

               
Cow position:
               
chrX:33020186-33020467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
58, 149
               

               
Conread position:
               
173-416
               

               
Cow position:
               
chrX:6607114-6607369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
48, 188
               

               
Conread position:
               
194-517
               

               
Cow position:
               
chrX:6675199-6674875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
32, 135
               

               
Conread position:
               
194-517
               

               
Cow position:
               
chrX:16762498-16762815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
32, 111
               

               
Conread position:
               
243-470
               

               
Cow position:
               
chrX:18216057-18216285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
57, 20
               

               
Conread position:
               
243-479
               

               
Cow position:
               
chrX:45845875-45846105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
243-513
               

               
Cow position:
               
chrX:38852976-38853238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
54, 61
               

               
Conread position:
               
249-451
               

               
Cow position:
               
chrX:40035659-40035463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
74, 98
               

               
Conread position:
               
250-476
               

               
Cow position:
               
chrX:29542432-29542214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
250-517
               

               
Cow position:
               
chrX:11589801-11589544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
251-512
               

               
Cow position:
               
chrX:7362063-7361825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
49, 54
               

               
Conread position:
               
252-515
               

               
Cow position:
               
chrX:8917641-8917889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
10, 78
               

               
Conread position:
               
252-517
               

               
Cow position:
               
chrX:10959612-10959351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
201, 94
               

               
Conread position:
               
253-463
               

               
Cow position:
               
chrX:34411628-34411834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
9, 94
               

               
Conread position:
               
253-514
               

               
Cow position:
               
chrX:28580012-28580267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
243, 93
               

               
Conread position:
               
253-516
               

               
Cow position:
               
chrX:46073031-46072774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
220, 93
               

               
Conread position:
               
253-517
               

               
Cow position:
               
chrX:13382115-13382375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
253-517
               

               
Cow position:
               
chrX:29602041-29601784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
254-502
               

               
Cow position:
               
chrX:8682139-8681894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
47, 55
               

               
Conread position:
               
255-461
               

               
Cow position:
               
chrX:2029181-2029382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
157, 91
               

               
Conread position:
               
255-517
               

               
Cow position:
               
chrX:41167173-41166918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
256-429
               

               
Cow position:
               
chrX:678775-678608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
256-455
               

               
Cow position:
               
chrX:35273144-35273339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
28, 91
               

               
Conread position:
               
256-455
               

               
Cow position:
               
chrX:46315588-46315393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
256-464
               

               
Cow position:
               
chrX:41673896-41674103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
47, 91
               

               
Conread position:
               
256-478
               

               
Cow position:
               
chrX:23497872-23497661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
256-480
               

               
Cow position:
               
chrX:42381307-42381094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
129, 52
               

               
Conread position:
               
256-488
               

               
Cow position:
               
chrX:41083718-41083947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
44, 37
               

               
Conread position:
               
256-492
               

               
Cow position:
               
chrX:2648558-2648331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
210, 67
               

               
Conread position:
               
256-496
               

               
Cow position:
               
chrX:488282-488518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
219, 68
               

               
Conread position:
               
256-507
               

               
Cow position:
               
chrX:13323204-13322961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
256-509
               

               
Cow position:
               
chrX:19930448-19930689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
129, 73
               

               
Conread position:
               
256-511
               

               
Cow position:
               
chrX:1978302-1978552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
210, 123
               

               
Conread position:
               
256-513
               

               
Cow position:
               
chrX:21816051-21816307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
256-513
               

               
Cow position:
               
chrX:39558554-39558308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
256-514
               

               
Cow position:
               
chrX:11746634-11746887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 76
               

               
Conread position:
               
256-514
               

               
Cow position:
               
chrX:16284154-16283904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
61, 45
               

               
Conread position:
               
256-514
               

               
Cow position:
               
chrX:26940699-26940463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
256-515
               

               
Cow position:
               
chrX:20792025-20791773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
218, 74
               

               
Conread position:
               
256-516
               

               
Cow position:
               
chrX:27176527-27176269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
77, 111
               

               
Conread position:
               
256-516
               

               
Cow position:
               
chrX:29509651-29509395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
147, 74
               

               
Conread position:
               
256-516
               

               
Cow position:
               
chrX:30862095-30862359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
90, 101
               

               
Conread position:
               
256-516
               

               
Cow position:
               
chrX:38840681-38840927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chrX:619215-618958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
236, 90
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chrX:6278713-6278454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
126, 90
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chrX:7425258-7425514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
44, 50
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chrX:7497036-7497287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
160, 44
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chrX:8517669-8517916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
44, 31
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chrX:9041437-9041200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chrX:9855093-9855342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
200, 93
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chrX:9953934-9954183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chrX:16416301-16416553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chrX:17042483-17042727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chrX:17541756-17542004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chrX:17631010-17630759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
216, 78
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chrX:18456185-18456450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
130, 90
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chrX:21664931-21664675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
217, 19
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chrX:21672344-21672598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
189, 90
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chrX:23514225-23513971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
44, 25
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chrX:24366039-24365777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
105, 16
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chrX:25571202-25570949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
11, 75
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chrX:26876089-26875837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
236, 19
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chrX:37836380-37836630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
67, 56
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chrX:38549241-38549489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chrX:40788997-40789256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
62, 53
               

               
Conread position:
               
256-517
               

               
Cow position:
               
chrX:41884625-41884368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
236, 90
               

               
Conread position:
               
257-510
               

               
Cow position:
               
chrX:2147128-2147383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
138, 89
               

               
Conread position:
               
257-513
               

               
Cow position:
               
chrX:33000697-33000945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
235, 89
               

               
Conread position:
               
257-517
               

               
Cow position:
               
chrX:157982-157728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
199, 23
               

               
Conread position:
               
257-517
               

               
Cow position:
               
chrX:9201340-9201592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
89, 43
               

               
Conread position:
               
257-517
               

               
Cow position:
               
chrX:24132357-24132106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
49, 16
               

               
Conread position:
               
257-517
               

               
Cow position:
               
chrX:29032208-29032459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
220, 67
               

               
Conread position:
               
257-517
               

               
Cow position:
               
chrX:42500285-42500542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
109, 89
               

               
Conread position:
               
258-509
               

               
Cow position:
               
chrX:17725769-17726011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
234, 72
               

               
Conread position:
               
258-512
               

               
Cow position:
               
chrX:10302133-10302379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
215, 51
               

               
Conread position:
               
258-517
               

               
Cow position:
               
chrX:17662802-17662551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
258-517
               

               
Cow position:
               
chrX:24259787-24259537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
258-517
               

               
Cow position:
               
chrX:37781321-37781065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
88, 7
               

               
Conread position:
               
258-517
               

               
Cow position:
               
chrX:39938728-39938479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
232, 84
               

               
Conread position:
               
259-516
               

               
Cow position:
               
chrX:28836105-28835859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
213, 16
               

               
Conread position:
               
261-514
               

               
Cow position:
               
chrX:31340502-31340752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
211, 85
               

               
Conread position:
               
261-517
               

               
Cow position:
               
chrX:6563310-6563568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
262-473
               

               
Cow position:
               
chrX:36283144-36283353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
122, 84
               

               
Conread position:
               
270-514
               

               
Cow position:
               
chrX:2764676-2764904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
203, 54
               

               
Conread position:
               
273-517
               

               
Cow position:
               
chrX:8869599-8869358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
37, 77
               

               
Conread position:
               
273-517
               

               
Cow position:
               
chrX:31311835-31312073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
219, 73
               

               
Conread position:
               
273-517
               

               
Cow position:
               
chrX:36961445-36961685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
106, 73
               

               
Conread position:
               
281-517
               

               
Cow position:
               
chrX:46146745-46146517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
9, 53
               

               
Conread position:
               
284-458
               

               
Cow position:
               
chrX:30005089-30005253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
285-517
               

               
Cow position:
               
chrX:16514443-16514218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
196, 39
               

               
Conread position:
               
288-517
               

               
Cow position:
               
chrX:46029157-46028939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
10, 17
               

               
Conread position:
               
292-517
               

               
Cow position:
               
chrX:25388409-25388193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
295-515
               

               
Cow position:
               
chrX:23666954-23667168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
178, 35
               

               
Conread position:
               
308-513
               

               
Cow position:
               
chrX:29055964-29056158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
309-517
               

               
Cow position:
               
chrX:20584164-20584372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
147, 76
               

               
Conread position:
               
314-517
               

               
Cow position:
               
chrX:39415519-39415326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
315-494
               

               
Cow position:
               
chrX:33590579-33590749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
100, 15
               

               
Conread position:
               
315-496
               

               
Cow position:
               
chrX:31252266-31252441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
175, 31
               

               
Conread position:
               
315-510
               

               
Cow position:
               
chrX:8913771-8913960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
157, 31
               

               
Conread position:
               
315-510
               

               
Cow position:
               
chrX:8915515-8915704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
157, 31
               

               
Conread position:
               
315-514
               

               
Cow position:
               
chrX:25193512-25193704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
94, 15
               

               
Conread position:
               
315-517
               

               
Cow position:
               
chrX:38999694-38999900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
70, 31
               

               
Conread position:
               
319-513
               

               
Cow position:
               
chrX:23254358-23254164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
69, 27
               

               
Conread position:
               
322-484
               

               
Cow position:
               
chrX:31273098-31273260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
144, 18
               

               
Conread position:
               
323-516
               

               
Cow position:
               
chrX:29680404-29680218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
324-517
               

               
Cow position:
               
chrX:19878907-19879088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
326-515
               

               
Cow position:
               
chrX:21566261-21566449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
146, 20
               

               
Conread position:
               
329-514
               

               
Cow position:
               
chrX:41070797-41070978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
145, 56
               

               
Conread position:
               
332-517
               

               
Cow position:
               
chrX:18417724-18417546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
332-517
               

               
Cow position:
               
chrX:32431492-32431668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
140, 14
               

               
Conread position:
               
333-515
               

               
Cow position:
               
chrX:27450133-27449955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
339-513
               

               
Cow position:
               
chrX:6041342-6041169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
132, 15
               

               
Conread position:
               
344-515
               

               
Cow position:
               
chrX:26493762-26493591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
129, 41
               

               
Conread position:
               
347-517
               

               
Cow position:
               
chrX:6656264-6656431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
121, 38
               

               
Conread position:
               
350-516
               

               
Cow position:
               
chrX:34994013-34994176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
8, 36
               

               
Conread position:
               
352-517
               

               
Cow position:
               
chrX:36559246-36559408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
62, 33
               

               
Conread position:
               
353-517
               

               
Cow position:
               
chrX:18142571-18142409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
119, 32
               

               
Conread position:
               
358-517
               

               
Cow position:
               
chrX:40642875-40643035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
90, 27
               

               
Conread position:
               
366-517
               

               
Cow position:
               
chrX:27771682-27771528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
369-515
               

               
Cow position:
               
chrX:25441091-25440956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
371-517
               

               
Cow position:
               
chrX:17896050-17895904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
377-517
               

               
Cow position:
               
chrX:7344993-7345132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
379-517
               

               
Cow position:
               
chrX:19678358-19678223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
95, 114
               
Show alignments to all cow chromosomes.