Cow genome map

Conread name: rebs07c_e14.y1

Conread position: 1-156
Cow position: chr28:23676086-23676241 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 110, 35

Conread position: 1-158
Cow position: chr28:11786770-11786612 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 82, 35

Conread position: 1-159
Cow position: chr28:5931301-5931458 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 82

Conread position: 1-161
Cow position: chr28:3161006-3160846 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 110, 142

Conread position: 1-161
Cow position: chr28:27161380-27161219 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 132
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 29, 122

Conread position: 1-162
Cow position: chr28:2752547-2752385 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 110, 0

Conread position: 1-162
Cow position: chr28:4307956-4307788 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 1-162
Cow position: chr28:23007786-23007621 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 31, 0

Conread position: 1-162
Cow position: chr28:26743572-26743735 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 130
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 24, 37

Conread position: 1-162
Cow position: chr28:30865365-30865526 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 27, 101

Conread position: 1-162
Cow position: chr28:31110056-31109895 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 115
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 110, 35

Conread position: 1-162
Cow position: chr28:33322401-33322568 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 1-163
Cow position: chr28:4841451-4841280 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 1-163
Cow position: chr28:8147914-8147754 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 110, 26

Conread position: 1-163
Cow position: chr28:16085271-16085435 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 29, 0

Conread position: 1-163
Cow position: chr28:18354376-18354217 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 109, 28

Conread position: 1-163
Cow position: chr28:28765957-28765793 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 1-163
Cow position: chr28:32174577-32174739 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 77, 35

Conread position: 1-164
Cow position: chr28:8408682-8408847 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 110, 26

Conread position: 1-165
Cow position: chr28:5826899-5827062 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 110, 35

Conread position: 1-166
Cow position: chr28:4881289-4881127 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 135
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 110, 24

Conread position: 1-166
Cow position: chr28:5144572-5144408 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 130
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 109, 35

Conread position: 1-166
Cow position: chr28:5166714-5166880 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 37, 24

Conread position: 1-166
Cow position: chr28:5650790-5650625 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 110, 141

Conread position: 1-166
Cow position: chr28:7009029-7008865 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 110, 32

Conread position: 1-166
Cow position: chr28:7267996-7267833 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 110, 96

Conread position: 1-166
Cow position: chr28:7388819-7388659 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 111, 24

Conread position: 1-166
Cow position: chr28:7805477-7805309 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 26, 59

Conread position: 1-166
Cow position: chr28:11559688-11559519 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 1-166
Cow position: chr28:17601605-17601441 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 110, 18

Conread position: 1-166
Cow position: chr28:19222203-19222038 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 38, 23

Conread position: 1-166
Cow position: chr28:20759754-20759589 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 110, 124

Conread position: 1-166
Cow position: chr28:21355171-21355344 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 37, 53

Conread position: 1-166
Cow position: chr28:26922419-26922255 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 110, 24

Conread position: 1-166
Cow position: chr28:32365790-32365956 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 134
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 38, 24

Conread position: 1-167
Cow position: chr28:4823554-4823716 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 110, 24

Conread position: 1-170
Cow position: chr28:4045796-4045961 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 29, 10

Conread position: 1-170
Cow position: chr28:20313223-20313394 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 39, 0

Conread position: 1-170
Cow position: chr28:23410377-23410206 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 138
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 105, 35

Conread position: 1-170
Cow position: chr28:25399820-25399985 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 26, 36

Conread position: 1-237
Cow position: chr28:21380826-21381061 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 173
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 36, 143

Conread position: 2-166
Cow position: chr28:20397422-20397257 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 132
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 36, 23

Conread position: 3-166
Cow position: chr28:5204142-5204308 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 119
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 7-166
Cow position: chr28:2279637-2279483 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 28, 83

Conread position: 9-164
Cow position: chr28:21868411-21868568 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 34, 10

Conread position: 9-166
Cow position: chr28:25249310-25249467 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 102, 27

Conread position: 9-170
Cow position: chr28:11866711-11866548 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 18, 29

Conread position: 9-177
Cow position: chr28:17601920-17601751 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 22, 37

Conread position: 10-122
Cow position: chr28:17012335-17012225 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 97
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 101, 23

Conread position: 10-145
Cow position: chr28:3449258-3449395 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 10-159
Cow position: chr28:19564275-19564122 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 22, 0

Conread position: 10-161
Cow position: chr28:4282533-4282383 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 101, 15

Conread position: 10-162
Cow position: chr28:11818010-11817855 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 30, 17

Conread position: 10-163
Cow position: chr28:6059514-6059360 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 124
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 101, 0

Conread position: 10-163
Cow position: chr28:34843618-34843465 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 18, 31

Conread position: 10-165
Cow position: chr28:13474257-13474412 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 21, 31

Conread position: 10-165
Cow position: chr28:14998021-14998178 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 19, 15

Conread position: 10-166
Cow position: chr28:3011316-3011157 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 24, 98

Conread position: 10-166
Cow position: chr28:3726257-3726096 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 19, 0

Conread position: 10-166
Cow position: chr28:4765632-4765789 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 126
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 100, 26

Conread position: 10-166
Cow position: chr28:21598297-21598137 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 29, 0

Conread position: 10-166
Cow position: chr28:26982780-26982625 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 101, 27

Conread position: 11-157
Cow position: chr28:7156791-7156941 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 11-164
Cow position: chr28:23724502-23724348 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 99, 14

Conread position: 11-166
Cow position: chr28:7698022-7697869 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 16, 27

Conread position: 11-166
Cow position: chr28:13090569-13090413 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 17, 55

Conread position: 11-166
Cow position: chr28:19026052-19025892 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 11-166
Cow position: chr28:19216778-19216934 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 29, 88

Conread position: 11-166
Cow position: chr28:29434472-29434315 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 11-166
Cow position: chr28:33051989-33052149 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 27, 152

Conread position: 12-172
Cow position: chr28:6283528-6283372 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 117
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 97, 7

Conread position: 13-159
Cow position: chr28:23793351-23793203 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 79, 23

Conread position: 16-159
Cow position: chr28:34248065-34247923 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 95, 20

Conread position: 17-170
Cow position: chr28:17680584-17680739 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 18-166
Cow position: chr28:11987139-11987284 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 66, 12

Conread position: 18-166
Cow position: chr28:12055377-12055522 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 66, 12

Conread position: 19-160
Cow position: chr28:19345216-19345357 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 63, 8

Conread position: 19-166
Cow position: chr28:3914683-3914830 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 53, 10

Conread position: 22-166
Cow position: chr28:5817807-5817955 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 25-163
Cow position: chr28:25677372-25677231 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 13, 0

Conread position: 26-163
Cow position: chr28:21008693-21008556 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 26-166
Cow position: chr28:5630070-5630209 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 84, 104

Conread position: 26-166
Cow position: chr28:11307546-11307404 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 85, 126

Conread position: 27-163
Cow position: chr28:4138699-4138561 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 104
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 27-166
Cow position: chr28:4355519-4355659 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 30, 9

Conread position: 27-166
Cow position: chr28:8149659-8149519 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 85, 0

Conread position: 27-166
Cow position: chr28:32179671-32179806 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 84, 11

Conread position: 27-171
Cow position: chr28:26719316-26719461 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 84, 0

Conread position: 30-163
Cow position: chr28:18770060-18770190 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 74, 0

Conread position: 31-163
Cow position: chr28:11398820-11398687 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 80, 0

Conread position: 33-166
Cow position: chr28:2898968-2899102 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 78, 0

Conread position: 33-166
Cow position: chr28:3143896-3143765 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 110
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 78, 64

Conread position: 33-166
Cow position: chr28:12951402-12951530 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 36-162
Cow position: chr28:24706879-24707006 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 75, 0

Conread position: 36-163
Cow position: chr28:11346505-11346377 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 98
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 75, 0

Conread position: 37-172
Cow position: chr28:10615963-10615827 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 74, 0

Conread position: 38-166
Cow position: chr28:5867711-5867834 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 108
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 73, 31

Conread position: 41-237
Cow position: chr28:10163787-10163978 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 70, 31

Conread position: 42-170
Cow position: chr28:15362567-15362696 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 66, 0

Conread position: 44-163
Cow position: chr28:19039029-19038909 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 67, 0

Conread position: 52-162
Cow position: chr28:5366125-5366015 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 88
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 56-170
Cow position: chr28:29042052-29041937 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 58-166
Cow position: chr28:5152605-5152714 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 59-166
Cow position: chr28:2743086-2743194 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 54, 0

Show alignments to all cow chromosomes.