Cow genome map

Conread name: rebs23c_e11.y1

Conread position: 162-644
Cow position: chr12:18421294-18420821 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 95

Conread position: 164-628
Cow position: chr12:4008647-4008186 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 48

Conread position: 164-633
Cow position: chr12:7000970-7000505 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 322
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 69, 108

Conread position: 170-562
Cow position: chr12:8076053-8075662 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 256
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 98, 19

Conread position: 171-556
Cow position: chr12:17079902-17080285 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 40

Conread position: 171-578
Cow position: chr12:30170303-30170716 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 190

Conread position: 171-608
Cow position: chr12:1889947-1889501 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 284
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 52, 171

Conread position: 171-608
Cow position: chr12:17000903-17001335 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 56

Conread position: 171-616
Cow position: chr12:16543936-16543494 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 295
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 29, 95

Conread position: 171-619
Cow position: chr12:27803403-27802963 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 48

Conread position: 171-624
Cow position: chr12:10895907-10895462 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 157

Conread position: 171-627
Cow position: chr12:15089132-15089611 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 407

Conread position: 171-629
Cow position: chr12:9143033-9143482 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 40

Conread position: 171-629
Cow position: chr12:17270192-17270632 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 311
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 218, 58

Conread position: 171-629
Cow position: chr12:40910649-40910190 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 86

Conread position: 171-629
Cow position: chr12:42181497-42181033 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 39

Conread position: 171-638
Cow position: chr12:27563736-27563270 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 100

Conread position: 171-638
Cow position: chr12:37770512-37770973 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 187

Conread position: 171-639
Cow position: chr12:5632233-5631775 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 167

Conread position: 171-644
Cow position: chr12:15429959-15429490 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 402

Conread position: 172-611
Cow position: chr12:47803797-47804236 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 85

Conread position: 172-625
Cow position: chr12:25561013-25561461 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 73

Conread position: 172-630
Cow position: chr12:42602594-42602143 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 80

Conread position: 173-581
Cow position: chr12:30578816-30578401 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 301

Conread position: 173-630
Cow position: chr12:4370879-4371342 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 306
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 207, 38

Conread position: 175-638
Cow position: chr12:33323853-33323388 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 82

Conread position: 179-644
Cow position: chr12:4342072-4341631 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 158

Conread position: 180-583
Cow position: chr12:6469396-6469010 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 285
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 44, 32

Conread position: 181-630
Cow position: chr12:6240958-6241416 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 210

Conread position: 181-633
Cow position: chr12:31959544-31959979 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 176

Conread position: 184-633
Cow position: chr12:39486084-39486513 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 198-616
Cow position: chr12:30605485-30605081 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 12

Conread position: 212-630
Cow position: chr12:35368322-35368739 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 125

Conread position: 213-625
Cow position: chr12:11056559-11056966 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 192

Conread position: 215-633
Cow position: chr12:45820671-45820266 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 9

Conread position: 216-625
Cow position: chr12:30745399-30745811 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 114

Conread position: 218-630
Cow position: chr12:30590466-30590863 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 6

Conread position: 218-633
Cow position: chr12:37994037-37993630 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 44

Conread position: 218-634
Cow position: chr12:15530753-15531158 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 283
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 187, 39

Conread position: 219-628
Cow position: chr12:41473783-41474184 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 268
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 19, 108

Conread position: 223-616
Cow position: chr12:31198461-31198851 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 273
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 183, 57

Conread position: 224-515
Cow position: chr12:29411790-29411505 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 28

Conread position: 224-568
Cow position: chr12:731231-730900 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 237
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 183, 52

Conread position: 224-632
Cow position: chr12:8943526-8943123 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 73

Conread position: 224-638
Cow position: chr12:18518365-18518778 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 97

Conread position: 225-619
Cow position: chr12:6210462-6210071 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 109

Conread position: 225-630
Cow position: chr12:41159292-41159684 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 32

Conread position: 229-628
Cow position: chr12:4866515-4866912 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 282
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 161, 28

Conread position: 232-542
Cow position: chr12:26317161-26317476 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 227
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 48, 87

Conread position: 233-622
Cow position: chr12:16605943-16605578 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 272
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 284, 90

Conread position: 233-625
Cow position: chr12:22881755-22882149 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 271
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 142, 24

Conread position: 234-558
Cow position: chr12:41091233-41091560 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 196

Conread position: 239-644
Cow position: chr12:32169245-32169651 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 6

Conread position: 242-630
Cow position: chr12:19502708-19502333 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 332, 165

Conread position: 246-627
Cow position: chr12:18388566-18388191 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 88

Conread position: 251-530
Cow position: chr12:43942200-43942473 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 94

Conread position: 254-630
Cow position: chr12:30662226-30661855 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 265
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 28, 81

Conread position: 257-606
Cow position: chr12:39465305-39465654 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 150

Conread position: 257-633
Cow position: chr12:29780175-29779815 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 259
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 130, 79

Conread position: 263-629
Cow position: chr12:5635715-5635357 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 86

Conread position: 271-632
Cow position: chr12:17774546-17774893 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 233
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 119, 67

Conread position: 273-557
Cow position: chr12:40029012-40028728 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 195
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 106, 67

Conread position: 284-568
Cow position: chr12:24211170-24211444 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 200
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 104, 0

Conread position: 286-628
Cow position: chr12:29770817-29770484 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 43

Conread position: 289-568
Cow position: chr12:28471398-28471684 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 200
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 138, 38

Conread position: 292-632
Cow position: chr12:27037686-27037351 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 10

Conread position: 295-553
Cow position: chr12:4162606-4162341 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 174
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 94, 0

Conread position: 296-633
Cow position: chr12:1030746-1031078 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 213
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 155, 68

Conread position: 298-644
Cow position: chr12:24662883-24663224 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 244
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 120, 46

Conread position: 299-598
Cow position: chr12:12579256-12578968 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 205
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 90, 39

Conread position: 309-506
Cow position: chr12:18021372-18021567 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 80, 41

Conread position: 309-578
Cow position: chr12:18964150-18963881 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 180
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 85, 20

Conread position: 314-634
Cow position: chr12:25444701-25445016 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 220
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 34, 55

Conread position: 321-530
Cow position: chr12:38454704-38454908 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 165
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 65, 0

Conread position: 323-578
Cow position: chr12:25452655-25452400 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 175
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 93, 52

Conread position: 325-626
Cow position: chr12:36544858-36544549 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 70

Conread position: 343-625
Cow position: chr12:11587576-11587866 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 191
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 41, 247

Conread position: 343-625
Cow position: chr12:38774431-38774150 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 190
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 45, 119

Conread position: 353-597
Cow position: chr12:19507451-19507703 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 170
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 42

Conread position: 370-625
Cow position: chr12:42784143-42784404 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 175
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 48, 218

Conread position: 373-638
Cow position: chr12:37170104-37169840 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 193
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 45, 71

Conread position: 376-621
Cow position: chr12:24032343-24032586 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 159
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 81, 0

Conread position: 379-644
Cow position: chr12:10942133-10942398 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 181
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 5, 45

Conread position: 380-627
Cow position: chr12:9767029-9766783 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 10, 42

Conread position: 387-625
Cow position: chr12:46120977-46120739 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 171
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 30, 78

Conread position: 388-623
Cow position: chr12:26217972-26217731 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 158
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 404-625
Cow position: chr12:17269674-17269894 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 158
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 70, 9

Conread position: 404-629
Cow position: chr12:16670140-16670364 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 156
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 66, 9

Conread position: 409-638
Cow position: chr12:19261077-19261301 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 158
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 55, 25

Conread position: 413-630
Cow position: chr12:11659808-11660018 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 150
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 47, 130

Conread position: 431-625
Cow position: chr12:37514382-37514190 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 139
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 27, 38

Conread position: 439-623
Cow position: chr12:26777283-26777101 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 32, 99

Conread position: 440-618
Cow position: chr12:5554426-5554249 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 126
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 160

Show alignments to all cow chromosomes.