Cow genome map

Conread name: rebs23c_e11.y1

Conread position: 164-608
Cow position: chr20:19459927-19459510 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 20

Conread position: 164-629
Cow position: chr20:581213-580741 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 101

Conread position: 171-515
Cow position: chr20:38817738-38818072 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 41

Conread position: 171-566
Cow position: chr20:34001670-34001273 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 271
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 189, 39

Conread position: 171-575
Cow position: chr20:19363640-19363237 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 140

Conread position: 171-579
Cow position: chr20:4621618-4621225 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 290
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 66, 29

Conread position: 171-591
Cow position: chr20:23792326-23792745 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 86

Conread position: 171-618
Cow position: chr20:33532032-33532469 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 135

Conread position: 171-623
Cow position: chr20:28604936-28605382 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 58

Conread position: 171-624
Cow position: chr20:17251433-17251890 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 86

Conread position: 171-625
Cow position: chr20:28982424-28982874 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 40

Conread position: 171-625
Cow position: chr20:32847074-32847518 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 162

Conread position: 171-626
Cow position: chr20:20967079-20967495 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 302
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 236, 41

Conread position: 171-626
Cow position: chr20:29844767-29845226 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 175

Conread position: 171-629
Cow position: chr20:40781699-40782143 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 312
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 122, 44

Conread position: 171-630
Cow position: chr20:4945523-4945075 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 150

Conread position: 171-630
Cow position: chr20:6096763-6096317 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 124

Conread position: 171-630
Cow position: chr20:31740490-31740041 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 40

Conread position: 171-638
Cow position: chr20:6240807-6240333 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 391

Conread position: 171-638
Cow position: chr20:7426467-7426011 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 7

Conread position: 171-638
Cow position: chr20:12582226-12581769 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 151

Conread position: 171-638
Cow position: chr20:14806607-14807070 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 35

Conread position: 172-625
Cow position: chr20:5702471-5702897 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 48

Conread position: 173-621
Cow position: chr20:40176977-40177414 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 13

Conread position: 173-627
Cow position: chr20:11550090-11550542 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 171

Conread position: 173-638
Cow position: chr20:25009916-25009446 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 38

Conread position: 174-614
Cow position: chr20:9412221-9412650 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 92

Conread position: 180-595
Cow position: chr20:20202947-20203363 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 156

Conread position: 180-623
Cow position: chr20:398562-398136 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 48

Conread position: 181-573
Cow position: chr20:9433334-9433710 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 270
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 208, 76

Conread position: 182-537
Cow position: chr20:13967526-13967169 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 157

Conread position: 186-561
Cow position: chr20:8703172-8702806 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 74

Conread position: 188-626
Cow position: chr20:22064812-22065236 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 59

Conread position: 189-620
Cow position: chr20:5950889-5950475 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 288
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 281, 22

Conread position: 190-579
Cow position: chr20:35999429-35999822 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 269
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 190, 90

Conread position: 190-630
Cow position: chr20:22959604-22959170 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 298
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 43, 71

Conread position: 198-563
Cow position: chr20:3607202-3606848 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 56

Conread position: 199-577
Cow position: chr20:22235062-22235439 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 133

Conread position: 202-633
Cow position: chr20:39517765-39518187 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 43

Conread position: 212-629
Cow position: chr20:10200104-10200525 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 130

Conread position: 212-631
Cow position: chr20:6903092-6903495 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 273
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 412, 45

Conread position: 215-568
Cow position: chr20:4205730-4206090 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 9

Conread position: 218-618
Cow position: chr20:39398258-39398647 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 44

Conread position: 218-629
Cow position: chr20:17845728-17846133 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 46

Conread position: 218-631
Cow position: chr20:35177004-35176598 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 277
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 48, 79

Conread position: 223-557
Cow position: chr20:20359998-20359675 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 221
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 5, 30

Conread position: 223-628
Cow position: chr20:15549123-15548714 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 98

Conread position: 224-551
Cow position: chr20:39019471-39019797 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 38

Conread position: 225-530
Cow position: chr20:23505605-23505908 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 32

Conread position: 225-539
Cow position: chr20:14735453-14735758 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 32

Conread position: 225-578
Cow position: chr20:21928674-21929033 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 247
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 38, 107

Conread position: 225-638
Cow position: chr20:12420845-12420432 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 116

Conread position: 226-630
Cow position: chr20:26996311-26996709 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 40

Conread position: 227-584
Cow position: chr20:35009962-35009607 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 252
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 162, 23

Conread position: 228-563
Cow position: chr20:11482360-11482021 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 235
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 161, 240

Conread position: 228-626
Cow position: chr20:21372094-21372482 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 269
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 35, 161

Conread position: 229-611
Cow position: chr20:40511977-40511595 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 28

Conread position: 231-620
Cow position: chr20:38768671-38768293 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 103

Conread position: 232-626
Cow position: chr20:6890488-6890884 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 240

Conread position: 235-625
Cow position: chr20:14879572-14879962 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 94

Conread position: 245-558
Cow position: chr20:39325181-39325499 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 217
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 138, 0

Conread position: 246-635
Cow position: chr20:15566034-15565643 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 266
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 141, 178

Conread position: 253-639
Cow position: chr20:34098154-34097768 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 269
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 155, 68

Conread position: 254-627
Cow position: chr20:23846867-23846489 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 102

Conread position: 257-611
Cow position: chr20:34107924-34108266 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 231
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 160, 37

Conread position: 257-617
Cow position: chr20:6602849-6603207 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 73

Conread position: 257-625
Cow position: chr20:12239872-12239510 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 122

Conread position: 257-632
Cow position: chr20:11542475-11542102 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 100

Conread position: 261-606
Cow position: chr20:36207614-36207970 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 120

Conread position: 270-644
Cow position: chr20:3141404-3141761 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 253
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 118, 56

Conread position: 276-625
Cow position: chr20:16935476-16935141 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 170

Conread position: 280-616
Cow position: chr20:31080875-31081204 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 218
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 138, 13

Conread position: 282-625
Cow position: chr20:3254881-3255210 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 132

Conread position: 293-623
Cow position: chr20:15569106-15568778 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 222
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 95, 156

Conread position: 294-577
Cow position: chr20:8307858-8308144 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 206
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 113, 243

Conread position: 296-616
Cow position: chr20:1575946-1576263 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 216
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 154, 38

Conread position: 296-617
Cow position: chr20:13025761-13025443 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 219
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 88, 18

Conread position: 296-634
Cow position: chr20:34221320-34221659 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 232
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 6, 171

Conread position: 299-558
Cow position: chr20:36010639-36010904 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 192
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 85, 177

Conread position: 300-591
Cow position: chr20:28441177-28441468 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 158

Conread position: 302-619
Cow position: chr20:4334667-4334362 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 213
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 116, 44

Conread position: 310-626
Cow position: chr20:30710789-30710463 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 222
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 77, 284

Conread position: 311-644
Cow position: chr20:9267239-9266914 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 224
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 148, 37

Conread position: 314-628
Cow position: chr20:22484725-22485036 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 221
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 75, 20

Conread position: 315-558
Cow position: chr20:4332004-4332238 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 170
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 74, 19

Conread position: 334-627
Cow position: chr20:32463640-32463349 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 212
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 82, 184

Conread position: 340-554
Cow position: chr20:24000911-24000693 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 148
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 47, 11

Conread position: 341-578
Cow position: chr20:39267071-39266830 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 182
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 63, 151

Conread position: 353-638
Cow position: chr20:18379282-18379564 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 200
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 106, 62

Conread position: 356-563
Cow position: chr20:35710075-35710287 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 43, 75

Conread position: 356-623
Cow position: chr20:7738323-7738058 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 182
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 61, 98

Conread position: 357-591
Cow position: chr20:22265341-22265111 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 164
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 59, 102

Conread position: 364-621
Cow position: chr20:32866276-32866027 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 177
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 37, 167

Conread position: 376-546
Cow position: chr20:21204283-21204454 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 42, 74

Conread position: 380-644
Cow position: chr20:16941362-16941097 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 179
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 32, 98

Conread position: 388-630
Cow position: chr20:38089847-38090091 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 170
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 30, 215

Conread position: 404-629
Cow position: chr20:10772160-10772384 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 153
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 63, 9

Conread position: 404-633
Cow position: chr20:38514738-38514961 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 162
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 9, 0

Conread position: 407-630
Cow position: chr20:40157859-40158078 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 150
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 62, 0

Conread position: 409-596
Cow position: chr20:17100321-17100508 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 129
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 51, 124

Conread position: 409-633
Cow position: chr20:22030280-22030498 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 54, 162

Conread position: 422-591
Cow position: chr20:6358588-6358761 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 428-565
Cow position: chr20:35354844-35354704 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 122, 0

Conread position: 428-629
Cow position: chr20:12126325-12126125 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 135
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 428-633
Cow position: chr20:21815540-21815742 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 12

Conread position: 459-628
Cow position: chr20:15529870-15530036 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 141, 83

Show alignments to all cow chromosomes.