Cow genome map

Conread name: rebs23c_e11.y1

Conread position: 167-619
Cow position: chr25:18721435-18720996 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 94

Conread position: 171-506
Cow position: chr25:35340012-35340341 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 39

Conread position: 171-524
Cow position: chr25:2414514-2414844 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 40

Conread position: 171-575
Cow position: chr25:4680917-4681310 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 15

Conread position: 171-578
Cow position: chr25:8120454-8120863 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 86

Conread position: 171-591
Cow position: chr25:36037113-36036683 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 172

Conread position: 171-617
Cow position: chr25:11662138-11661696 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 51

Conread position: 171-619
Cow position: chr25:21191167-21191610 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 45

Conread position: 171-621
Cow position: chr25:15273367-15273797 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 0

Conread position: 171-625
Cow position: chr25:4522140-4521710 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 90

Conread position: 171-631
Cow position: chr25:33959582-33959118 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 15

Conread position: 171-633
Cow position: chr25:22530964-22531417 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 147

Conread position: 172-537
Cow position: chr25:9957356-9956996 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 259
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 49, 137

Conread position: 172-626
Cow position: chr25:16922114-16921667 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 415, 75

Conread position: 173-558
Cow position: chr25:3145525-3145907 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 113

Conread position: 173-578
Cow position: chr25:11437123-11436724 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 163

Conread position: 173-621
Cow position: chr25:22314880-22315335 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 162

Conread position: 173-623
Cow position: chr25:787951-788388 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 38

Conread position: 175-558
Cow position: chr25:16064580-16064955 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 28

Conread position: 175-616
Cow position: chr25:27531587-27531152 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 160

Conread position: 175-633
Cow position: chr25:11585192-11585654 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 219

Conread position: 177-562
Cow position: chr25:35347585-35347970 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 83

Conread position: 179-556
Cow position: chr25:23053242-23053618 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 257
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 201, 7

Conread position: 186-624
Cow position: chr25:7216520-7216951 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 153

Conread position: 186-629
Cow position: chr25:23829422-23828999 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 49

Conread position: 187-638
Cow position: chr25:15714574-15715014 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 199

Conread position: 191-562
Cow position: chr25:8576388-8576761 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 245
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 32, 145

Conread position: 192-578
Cow position: chr25:16319428-16319057 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 43

Conread position: 194-628
Cow position: chr25:6474400-6473956 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 65

Conread position: 198-629
Cow position: chr25:36761810-36762237 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 128

Conread position: 212-558
Cow position: chr25:20348576-20348932 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 129

Conread position: 215-625
Cow position: chr25:33457428-33457860 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 7

Conread position: 219-644
Cow position: chr25:9990365-9989962 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 5

Conread position: 224-629
Cow position: chr25:23917572-23917974 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 279
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 93, 42

Conread position: 225-568
Cow position: chr25:11131316-11131657 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 243
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 169, 41

Conread position: 225-608
Cow position: chr25:20076225-20076609 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 268
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 64, 32

Conread position: 225-629
Cow position: chr25:20007871-20008265 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 280
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 37, 91

Conread position: 226-558
Cow position: chr25:37594146-37594469 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 234
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 186, 100

Conread position: 227-627
Cow position: chr25:28188215-28187815 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 30

Conread position: 229-568
Cow position: chr25:35612566-35612240 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 234
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 36, 96

Conread position: 231-622
Cow position: chr25:12117249-12116872 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 45

Conread position: 235-578
Cow position: chr25:5407491-5407825 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 233
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 150, 22

Conread position: 236-636
Cow position: chr25:7581685-7581284 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 21

Conread position: 237-633
Cow position: chr25:15254588-15254212 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 99

Conread position: 245-515
Cow position: chr25:20211335-20211060 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 142

Conread position: 257-562
Cow position: chr25:38425126-38425428 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 209
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 11, 81

Conread position: 258-632
Cow position: chr25:61421-61785 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 258
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 126, 76

Conread position: 262-568
Cow position: chr25:29826178-29826483 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 207
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 20, 210

Conread position: 266-558
Cow position: chr25:10218279-10217986 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 208
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 29, 61

Conread position: 267-578
Cow position: chr25:6961377-6961070 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 226
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 150, 42

Conread position: 268-633
Cow position: chr25:35826499-35826145 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 257
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 188, 10

Conread position: 280-600
Cow position: chr25:14720539-14720849 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 281-627
Cow position: chr25:2624591-2624925 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 182

Conread position: 282-630
Cow position: chr25:12319550-12319218 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 244
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 126, 42

Conread position: 288-558
Cow position: chr25:5920731-5921007 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 184
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 101, 14

Conread position: 288-621
Cow position: chr25:22178715-22179040 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 237
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 117, 38

Conread position: 288-627
Cow position: chr25:13272363-13272700 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 116

Conread position: 292-625
Cow position: chr25:7750248-7750580 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 117

Conread position: 297-583
Cow position: chr25:26259692-26259400 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 193
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 83, 159

Conread position: 302-633
Cow position: chr25:22751205-22750868 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 218
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 22, 50

Conread position: 309-633
Cow position: chr25:36017354-36017669 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 231
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 102, 23

Conread position: 311-634
Cow position: chr25:18905698-18906028 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 221
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 78, 163

Conread position: 325-627
Cow position: chr25:23245182-23244873 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 215
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 68, 147

Conread position: 326-557
Cow position: chr25:26136996-26136761 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 160
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 35, 135

Conread position: 333-623
Cow position: chr25:21893173-21893465 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 203
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 73, 32

Conread position: 335-558
Cow position: chr25:6996619-6996847 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 160
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 129

Conread position: 338-507
Cow position: chr25:11054746-11054916 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 81, 13

Conread position: 346-633
Cow position: chr25:30618914-30619199 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 203
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 68, 37

Conread position: 359-563
Cow position: chr25:24051824-24052034 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 57, 73

Conread position: 364-591
Cow position: chr25:14157488-14157721 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 162
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 54, 31

Conread position: 365-554
Cow position: chr25:7449675-7449859 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 53, 30

Conread position: 370-605
Cow position: chr25:12510137-12509901 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 157
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 41, 98

Conread position: 373-627
Cow position: chr25:11051405-11051656 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 180
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 26, 153

Conread position: 378-627
Cow position: chr25:19364181-19363929 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 179
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 17, 218

Conread position: 381-627
Cow position: chr25:11433070-11432815 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 184
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 37, 232

Conread position: 387-631
Cow position: chr25:9843065-9843312 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 175
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 31, 45

Conread position: 390-555
Cow position: chr25:26642476-26642647 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 395-616
Cow position: chr25:4947863-4948081 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 152
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 15, 49

Conread position: 403-623
Cow position: chr25:13767878-13768096 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 152
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 71, 152

Conread position: 408-628
Cow position: chr25:13566876-13567102 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 157
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 55, 0

Conread position: 409-625
Cow position: chr25:13621444-13621231 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 54, 121

Conread position: 409-630
Cow position: chr25:36872277-36872493 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 149
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 44, 61

Conread position: 409-633
Cow position: chr25:23745172-23745397 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 150
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 48, 192

Conread position: 409-644
Cow position: chr25:7799468-7799694 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 158
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 416-630
Cow position: chr25:40931197-40931406 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 49, 28

Conread position: 417-633
Cow position: chr25:23504970-23505188 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 152
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 35, 180

Conread position: 427-625
Cow position: chr25:1840254-1840452 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 31, 174

Conread position: 428-614
Cow position: chr25:11276486-11276669 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 130
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 180, 34

Conread position: 428-629
Cow position: chr25:26306272-26306072 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 32, 143

Conread position: 429-633
Cow position: chr25:36019733-36019534 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 31, 115

Conread position: 452-644
Cow position: chr25:28597655-28597461 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 135
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 69, 0

Conread position: 457-634
Cow position: chr25:18929230-18929055 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 125
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 142, 108

Conread position: 463-627
Cow position: chr25:13222868-13223029 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 117
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 107, 0

Conread position: 478-644
Cow position: chr25:3744762-3744597 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 126, 0

Show alignments to all cow chromosomes.