Cow genome map

Conread name: rebs23c_e11.y1

Conread position: 170-578
Cow position: chr27:26412980-26413383 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 41

Conread position: 170-633
Cow position: chr27:22549504-22549947 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 87

Conread position: 171-507
Cow position: chr27:30362520-30362188 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 117

Conread position: 171-558
Cow position: chr27:435519-435125 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 276
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 76, 19

Conread position: 171-558
Cow position: chr27:26427851-26428241 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 284

Conread position: 171-563
Cow position: chr27:10582640-10582259 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 259
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 222, 161

Conread position: 171-578
Cow position: chr27:30868463-30868869 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 91

Conread position: 171-607
Cow position: chr27:24477677-24477259 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 288
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 258, 86

Conread position: 171-611
Cow position: chr27:20549406-20549870 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 436

Conread position: 171-618
Cow position: chr27:299106-299547 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 223

Conread position: 171-619
Cow position: chr27:22035100-22035548 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 15

Conread position: 171-620
Cow position: chr27:4673292-4672843 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 38

Conread position: 171-622
Cow position: chr27:26999148-26999590 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 29

Conread position: 171-623
Cow position: chr27:17397178-17397626 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 59

Conread position: 171-623
Cow position: chr27:27460313-27460745 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 302
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 228, 20

Conread position: 171-626
Cow position: chr27:29831411-29831876 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 86

Conread position: 171-627
Cow position: chr27:15454490-15454035 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 190

Conread position: 171-631
Cow position: chr27:15871439-15870982 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 303
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 111, 147

Conread position: 171-632
Cow position: chr27:14670104-14670564 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 87

Conread position: 171-632
Cow position: chr27:22603439-22603005 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 306
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 219, 40

Conread position: 171-633
Cow position: chr27:4385788-4386245 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 179

Conread position: 171-634
Cow position: chr27:19718193-19717730 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 50

Conread position: 171-638
Cow position: chr27:22171575-22171114 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 7

Conread position: 172-558
Cow position: chr27:11435056-11435431 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 265
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 63, 21

Conread position: 172-612
Cow position: chr27:15319727-15319298 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 288
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 146, 30

Conread position: 172-627
Cow position: chr27:28931513-28931979 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 40

Conread position: 172-638
Cow position: chr27:8062086-8062539 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 302
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 234, 39

Conread position: 173-563
Cow position: chr27:21393232-21393621 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 276
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 92, 21

Conread position: 173-625
Cow position: chr27:20828432-20828884 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 130

Conread position: 175-625
Cow position: chr27:19388290-19387844 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 56

Conread position: 178-627
Cow position: chr27:21668855-21669288 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 179-626
Cow position: chr27:20641074-20641513 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 133

Conread position: 180-618
Cow position: chr27:20067719-20068142 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 49

Conread position: 183-556
Cow position: chr27:22426565-22426939 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 252
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 80, 90

Conread position: 186-638
Cow position: chr27:7412645-7412206 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 234

Conread position: 187-633
Cow position: chr27:23483486-23483048 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 139

Conread position: 192-558
Cow position: chr27:15203975-15204338 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 246
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 146, 174

Conread position: 198-568
Cow position: chr27:23472506-23472140 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 35

Conread position: 198-625
Cow position: chr27:1290618-1291022 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 278
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 79, 0

Conread position: 198-627
Cow position: chr27:23452730-23452286 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 285

Conread position: 212-558
Cow position: chr27:30890522-30890182 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 15

Conread position: 212-576
Cow position: chr27:16284709-16284348 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 46

Conread position: 216-622
Cow position: chr27:23882143-23882540 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 9

Conread position: 225-522
Cow position: chr27:6523269-6522971 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 220
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 107, 130

Conread position: 225-623
Cow position: chr27:27632386-27632772 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 225-629
Cow position: chr27:10307072-10307480 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 280
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 91, 248

Conread position: 225-631
Cow position: chr27:19543686-19544103 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 280
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 163, 107

Conread position: 225-638
Cow position: chr27:19661166-19660740 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 287
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 43, 85

Conread position: 225-638
Cow position: chr27:30765255-30764845 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 281
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 155, 109

Conread position: 227-633
Cow position: chr27:20796005-20795609 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 88

Conread position: 232-540
Cow position: chr27:2682927-2683236 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 216
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 148, 116

Conread position: 232-557
Cow position: chr27:20553933-20553624 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 233-533
Cow position: chr27:30551211-30550912 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 101

Conread position: 235-633
Cow position: chr27:22454565-22454958 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 279
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 5, 100

Conread position: 235-638
Cow position: chr27:26239237-26238836 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 51

Conread position: 241-591
Cow position: chr27:1498521-1498173 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 68

Conread position: 243-618
Cow position: chr27:19685509-19685881 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 95

Conread position: 254-558
Cow position: chr27:11296452-11296161 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 213
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 226, 119

Conread position: 257-623
Cow position: chr27:16705438-16705079 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 248
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 129, 63

Conread position: 263-633
Cow position: chr27:30988983-30988616 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 87

Conread position: 265-568
Cow position: chr27:29431639-29431350 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 219
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 140, 18

Conread position: 267-556
Cow position: chr27:6788140-6787849 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 202
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 122, 49

Conread position: 269-583
Cow position: chr27:4067-3762 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 95

Conread position: 275-578
Cow position: chr27:6160155-6159852 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 202
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 130, 33

Conread position: 277-591
Cow position: chr27:15408872-15409178 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 52

Conread position: 281-583
Cow position: chr27:27613471-27613753 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 203
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 267, 59

Conread position: 282-633
Cow position: chr27:26426375-26426031 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 248
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 136, 149

Conread position: 289-627
Cow position: chr27:11480470-11480816 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 235
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 100, 51

Conread position: 293-638
Cow position: chr27:23891093-23890745 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 237
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 97, 43

Conread position: 294-631
Cow position: chr27:22513520-22513858 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 231
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 85, 60

Conread position: 296-619
Cow position: chr27:28270994-28271318 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 213
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 83, 44

Conread position: 299-629
Cow position: chr27:7731099-7731433 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 220
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 85, 35

Conread position: 301-562
Cow position: chr27:29312522-29312787 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 181
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 117, 80

Conread position: 309-554
Cow position: chr27:20789240-20789484 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 187
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 108, 21

Conread position: 311-633
Cow position: chr27:16589575-16589884 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 233
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 110, 36

Conread position: 316-629
Cow position: chr27:16103936-16103634 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 226
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 102, 18

Conread position: 322-625
Cow position: chr27:31148892-31148588 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 203
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 8, 35

Conread position: 324-632
Cow position: chr27:22569898-22569607 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 211
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 16, 0

Conread position: 332-630
Cow position: chr27:30260776-30261071 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 197
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 54, 5

Conread position: 336-578
Cow position: chr27:8405720-8405951 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 164
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 338-578
Cow position: chr27:16626010-16625771 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 183
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 66, 5

Conread position: 338-601
Cow position: chr27:21213885-21213636 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 184
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 70, 0

Conread position: 346-630
Cow position: chr27:23594422-23594143 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 200
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 112, 75

Conread position: 348-591
Cow position: chr27:29504543-29504791 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 168
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 67, 38

Conread position: 357-577
Cow position: chr27:20092743-20092962 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 159
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 116, 50

Conread position: 385-629
Cow position: chr27:29593566-29593808 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 156
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 387-634
Cow position: chr27:26407100-26407336 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 175
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 20, 95

Conread position: 389-644
Cow position: chr27:590704-590955 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 167
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 96, 37

Conread position: 390-618
Cow position: chr27:20812967-20812736 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 154
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 36, 25

Conread position: 415-627
Cow position: chr27:23559997-23560206 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 157
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 45, 55

Conread position: 429-627
Cow position: chr27:12459304-12459113 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 50, 34

Conread position: 433-633
Cow position: chr27:19509030-19508831 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 27, 167

Conread position: 436-625
Cow position: chr27:28478594-28478407 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 134
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 25, 164

Conread position: 437-625
Cow position: chr27:31210559-31210375 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 50

Conread position: 459-627
Cow position: chr27:15002988-15003156 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 463-633
Cow position: chr27:30489424-30489592 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 122
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 130, 0

Conread position: 465-629
Cow position: chr27:7343444-7343606 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 118
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 99, 116

Show alignments to all cow chromosomes.