Cow genome map

Conread name: rebs23c_e11.y1

Conread position: 170-625
Cow position: chr28:29199406-29199865 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 26

Conread position: 170-633
Cow position: chr28:8022427-8021959 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 41

Conread position: 171-506
Cow position: chr28:3751004-3751332 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 86

Conread position: 171-530
Cow position: chr28:5904421-5904774 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 54

Conread position: 171-539
Cow position: chr28:7751615-7751250 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 15

Conread position: 171-554
Cow position: chr28:4587781-4588163 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 90

Conread position: 171-558
Cow position: chr28:10744890-10745284 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 167

Conread position: 171-562
Cow position: chr28:5826633-5827024 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 257
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 172, 152

Conread position: 171-568
Cow position: chr28:11527569-11527179 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 51

Conread position: 171-568
Cow position: chr28:21380566-21380961 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 71

Conread position: 171-572
Cow position: chr28:26151710-26152100 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 258
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 180, 31

Conread position: 171-573
Cow position: chr28:5792387-5792792 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 286
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 18, 43

Conread position: 171-579
Cow position: chr28:22308346-22308732 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 277
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 218, 50

Conread position: 171-580
Cow position: chr28:14933647-14934050 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 86

Conread position: 171-606
Cow position: chr28:11585522-11585084 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 11

Conread position: 171-611
Cow position: chr28:21598568-21598130 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 86

Conread position: 171-616
Cow position: chr28:11752460-11752011 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 0

Conread position: 171-617
Cow position: chr28:10589344-10588895 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 205

Conread position: 171-619
Cow position: chr28:3745888-3746333 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 52

Conread position: 171-621
Cow position: chr28:661798-662238 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 303
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 42, 109

Conread position: 171-621
Cow position: chr28:2961133-2960696 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 15

Conread position: 171-623
Cow position: chr28:5684389-5684838 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 190

Conread position: 171-625
Cow position: chr28:21844641-21845092 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 86

Conread position: 171-625
Cow position: chr28:22332235-22332667 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 64

Conread position: 171-625
Cow position: chr28:25056656-25057097 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 159

Conread position: 171-626
Cow position: chr28:16919476-16919033 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 40

Conread position: 171-627
Cow position: chr28:21868136-21868595 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 87

Conread position: 171-627
Cow position: chr28:33884095-33884538 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 15

Conread position: 171-629
Cow position: chr28:14997749-14998207 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 13

Conread position: 171-630
Cow position: chr28:4138993-4138530 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 299
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 59, 177

Conread position: 171-630
Cow position: chr28:4308213-4307756 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 100

Conread position: 171-630
Cow position: chr28:21363443-21363880 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 117

Conread position: 171-630
Cow position: chr28:24671958-24672405 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 142

Conread position: 171-632
Cow position: chr28:20312959-20313421 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 123

Conread position: 171-633
Cow position: chr28:12964262-12964712 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 128

Conread position: 171-638
Cow position: chr28:13473992-13474447 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 67

Conread position: 172-627
Cow position: chr28:5203891-5204332 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 25

Conread position: 173-578
Cow position: chr28:18590957-18591360 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 75

Conread position: 173-629
Cow position: chr28:8347409-8347872 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 163

Conread position: 175-578
Cow position: chr28:23675837-23676228 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 36

Conread position: 176-630
Cow position: chr28:6059777-6059328 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 46

Conread position: 176-633
Cow position: chr28:26743311-26743769 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 82

Conread position: 179-558
Cow position: chr28:16085018-16085395 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 61

Conread position: 179-621
Cow position: chr28:3024216-3023781 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 37

Conread position: 181-644
Cow position: chr28:12430304-12430754 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 61

Conread position: 187-608
Cow position: chr28:23008027-23007610 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 139

Conread position: 190-578
Cow position: chr28:15044152-15043772 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 103

Conread position: 197-633
Cow position: chr28:31110294-31109858 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 69

Conread position: 201-623
Cow position: chr28:11426829-11426410 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 11

Conread position: 208-627
Cow position: chr28:16370352-16369946 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 21

Conread position: 216-610
Cow position: chr28:5128997-5128605 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 54

Conread position: 217-606
Cow position: chr28:18934183-18934572 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 273
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 13, 8

Conread position: 222-623
Cow position: chr28:3408481-3408084 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 35

Conread position: 224-575
Cow position: chr28:16204596-16204247 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 27

Conread position: 225-605
Cow position: chr28:26719099-26719460 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 268
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 192, 55

Conread position: 226-625
Cow position: chr28:3493044-3492649 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 31

Conread position: 227-578
Cow position: chr28:26922623-26922278 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 248
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 162, 30

Conread position: 227-623
Cow position: chr28:25249096-25249487 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 91

Conread position: 227-633
Cow position: chr28:19026262-19025862 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 87

Conread position: 231-583
Cow position: chr28:2862606-2862960 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 217

Conread position: 234-644
Cow position: chr28:5236852-5236448 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 38

Conread position: 235-625
Cow position: chr28:22345768-22346161 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 51

Conread position: 236-583
Cow position: chr28:8408486-8408829 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 250
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 22, 64

Conread position: 241-627
Cow position: chr28:16346771-16346398 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 243-627
Cow position: chr28:11423047-11422677 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 40

Conread position: 247-627
Cow position: chr28:9636696-9636320 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 213

Conread position: 250-629
Cow position: chr28:34430663-34430285 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 259
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 130, 212

Conread position: 252-631
Cow position: chr28:11884757-11884384 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 64

Conread position: 254-506
Cow position: chr28:10212930-10212699 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 184
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 160, 53

Conread position: 254-628
Cow position: chr28:2132155-2131786 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 110

Conread position: 257-583
Cow position: chr28:9099705-9100030 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 234
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 28, 107

Conread position: 261-623
Cow position: chr28:4016304-4016664 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 21

Conread position: 267-563
Cow position: chr28:5074724-5074433 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 215
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 137, 59

Conread position: 267-631
Cow position: chr28:18625003-18625375 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 250
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 117, 321

Conread position: 283-627
Cow position: chr28:4090248-4089921 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 238
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 135, 51

Conread position: 288-632
Cow position: chr28:4158753-4159097 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 194

Conread position: 292-625
Cow position: chr28:4881440-4881105 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 230
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 10, 43

Conread position: 295-629
Cow position: chr28:10999860-10999530 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 228
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 150, 41

Conread position: 295-630
Cow position: chr28:26982938-26982598 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 236
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 95, 178

Conread position: 297-511
Cow position: chr28:118245-118027 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 162
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 91, 68

Conread position: 301-626
Cow position: chr28:11866855-11866529 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 222
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 59, 139

Conread position: 303-623
Cow position: chr28:9684504-9684200 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 230
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 220, 94

Conread position: 308-558
Cow position: chr28:14720956-14720714 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 177
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 76, 31

Conread position: 322-626
Cow position: chr28:4643931-4643634 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 202
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 278, 64

Conread position: 322-631
Cow position: chr28:29989281-29988971 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 222
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 90, 84

Conread position: 326-578
Cow position: chr28:32365681-32365934 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 170
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 21, 89

Conread position: 337-515
Cow position: chr28:7608133-7607949 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 81, 0

Conread position: 345-625
Cow position: chr28:10863927-10863657 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 190
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 115, 72

Conread position: 350-633
Cow position: chr28:27161470-27161184 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 206
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 29, 12

Conread position: 358-627
Cow position: chr28:8140350-8140619 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 184
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 47, 102

Conread position: 375-616
Cow position: chr28:25128768-25129011 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 175
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 43, 167

Conread position: 387-614
Cow position: chr28:16246166-16245941 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 161
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 66, 40

Conread position: 388-623
Cow position: chr28:19564330-19564097 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 164
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 19, 35

Conread position: 399-623
Cow position: chr28:5139083-5138861 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 162
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 66, 14

Conread position: 404-638
Cow position: chr28:7350576-7350802 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 169
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 196, 9

Conread position: 408-623
Cow position: chr28:7619231-7619017 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 149
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 53, 192

Conread position: 415-627
Cow position: chr28:4181932-4182140 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 147
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 47, 0

Conread position: 419-639
Cow position: chr28:3411059-3410847 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 155
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 37, 149

Conread position: 426-629
Cow position: chr28:26531342-26531140 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 148
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 48, 29

Conread position: 428-627
Cow position: chr28:3445541-3445342 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 150
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 31, 55

Conread position: 428-638
Cow position: chr28:4013028-4013232 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 29, 0

Conread position: 432-617
Cow position: chr28:4438655-4438838 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 131
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 140, 133

Conread position: 435-563
Cow position: chr28:2762142-2762270 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 444-633
Cow position: chr28:7498192-7498002 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 131
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 452-630
Cow position: chr28:17739788-17739962 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 60

Conread position: 456-625
Cow position: chr28:5254843-5255009 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 119
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 13, 0

Show alignments to all cow chromosomes.