Cow genome map

Conread name: rebs23c_e11.y1

Conread position: 164-557
Cow position: chr29:29974715-29975100 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 33

Conread position: 170-567
Cow position: chr29:26263532-26263908 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 272
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 289, 78

Conread position: 171-526
Cow position: chr29:42848908-42849256 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 250
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 235, 44

Conread position: 171-553
Cow position: chr29:3704521-3704140 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 38

Conread position: 171-558
Cow position: chr29:20429291-20428901 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 40

Conread position: 171-558
Cow position: chr29:35484922-35485309 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 181

Conread position: 171-563
Cow position: chr29:26616058-26615652 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 178

Conread position: 171-578
Cow position: chr29:26778569-26778965 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 40

Conread position: 171-579
Cow position: chr29:28637383-28636985 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 281
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 214, 40

Conread position: 171-607
Cow position: chr29:28195838-28195409 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 40

Conread position: 171-614
Cow position: chr29:10653017-10653451 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 289
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 69, 163

Conread position: 171-616
Cow position: chr29:36216797-36217233 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 52

Conread position: 171-623
Cow position: chr29:40117249-40117697 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 38

Conread position: 171-629
Cow position: chr29:31786356-31786807 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 148

Conread position: 171-630
Cow position: chr29:45005938-45005494 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 95

Conread position: 171-631
Cow position: chr29:17409012-17409469 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 32

Conread position: 171-631
Cow position: chr29:36530542-36531002 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 11

Conread position: 171-632
Cow position: chr29:4480496-4480038 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 93

Conread position: 171-633
Cow position: chr29:13639675-13639230 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 314
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 247, 74

Conread position: 171-638
Cow position: chr29:2744594-2744126 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 163

Conread position: 171-638
Cow position: chr29:28775770-28775320 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 307
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 269, 28

Conread position: 171-644
Cow position: chr29:87335-86863 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 29

Conread position: 172-621
Cow position: chr29:35501966-35501531 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 47

Conread position: 173-556
Cow position: chr29:43328317-43328705 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 168

Conread position: 173-568
Cow position: chr29:17607096-17607491 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 240

Conread position: 174-547
Cow position: chr29:11136206-11135844 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 5

Conread position: 174-638
Cow position: chr29:10058845-10058397 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 10

Conread position: 175-562
Cow position: chr29:15940957-15940563 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 215

Conread position: 178-532
Cow position: chr29:4328119-4328451 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 0

Conread position: 178-566
Cow position: chr29:40337843-40337466 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 268
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 45, 125

Conread position: 179-634
Cow position: chr29:6293778-6293339 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 40

Conread position: 179-644
Cow position: chr29:5892536-5892990 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 32

Conread position: 181-509
Cow position: chr29:43312107-43311778 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 217
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 237, 76

Conread position: 181-629
Cow position: chr29:40096653-40097094 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 76

Conread position: 182-541
Cow position: chr29:10456863-10456516 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 88

Conread position: 194-638
Cow position: chr29:17109669-17110098 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 144

Conread position: 205-638
Cow position: chr29:29769632-29769211 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 17

Conread position: 215-630
Cow position: chr29:41530573-41530982 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 9

Conread position: 216-617
Cow position: chr29:39111585-39111192 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 91

Conread position: 220-509
Cow position: chr29:29302928-29302644 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 199
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 9, 66

Conread position: 222-630
Cow position: chr29:1022007-1022428 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 282
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 68, 262

Conread position: 224-562
Cow position: chr29:24604417-24604069 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 242
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 182, 33

Conread position: 224-627
Cow position: chr29:19338710-19339131 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 162

Conread position: 224-631
Cow position: chr29:14501325-14501727 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 42

Conread position: 225-591
Cow position: chr29:5099030-5098670 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 226-628
Cow position: chr29:7956251-7955859 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 269
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 161, 108

Conread position: 226-630
Cow position: chr29:22069014-22068610 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 287
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 161, 89

Conread position: 227-557
Cow position: chr29:4367455-4367788 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 231
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 159, 30

Conread position: 227-628
Cow position: chr29:22175427-22175811 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 276
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 176, 30

Conread position: 229-611
Cow position: chr29:9911913-9912291 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 258
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 187, 85

Conread position: 231-578
Cow position: chr29:109448-109770 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 243
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 26, 0

Conread position: 232-529
Cow position: chr29:3237620-3237319 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 36, 127

Conread position: 232-625
Cow position: chr29:22613174-22613555 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 25

Conread position: 237-578
Cow position: chr29:22162509-22162166 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 103

Conread position: 237-630
Cow position: chr29:17222152-17222548 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 237

Conread position: 237-633
Cow position: chr29:8926715-8926323 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 150

Conread position: 238-616
Cow position: chr29:356071-356441 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 96

Conread position: 239-529
Cow position: chr29:31594369-31594093 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 210
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 179, 81

Conread position: 241-627
Cow position: chr29:1556680-1557061 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 95

Conread position: 242-578
Cow position: chr29:11562363-11562696 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 114

Conread position: 243-628
Cow position: chr29:25737667-25737282 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 96

Conread position: 245-616
Cow position: chr29:22895468-22895847 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 250
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 26, 49

Conread position: 245-625
Cow position: chr29:40852688-40853056 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 256
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 193, 21

Conread position: 254-631
Cow position: chr29:23844593-23844972 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 254
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 151, 9

Conread position: 256-578
Cow position: chr29:868535-868858 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 219
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 136, 94

Conread position: 257-578
Cow position: chr29:24578640-24578946 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 238
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 28, 96

Conread position: 257-579
Cow position: chr29:24292642-24292952 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 220
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 125, 14

Conread position: 257-623
Cow position: chr29:34773964-34773609 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 53

Conread position: 257-627
Cow position: chr29:19949073-19949437 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 122

Conread position: 258-557
Cow position: chr29:24103784-24103479 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 186

Conread position: 267-568
Cow position: chr29:1229382-1229680 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 209
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 117, 48

Conread position: 267-578
Cow position: chr29:19821070-19821366 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 212
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 149, 51

Conread position: 276-630
Cow position: chr29:40299230-40298885 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 241
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 107, 75

Conread position: 288-631
Cow position: chr29:22690014-22690359 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 232
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 92, 185

Conread position: 293-562
Cow position: chr29:11433922-11434186 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 187
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 93, 43

Conread position: 294-558
Cow position: chr29:9718972-9718709 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 198
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 124, 113

Conread position: 302-630
Cow position: chr29:32211251-32210938 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 237
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 115, 129

Conread position: 303-565
Cow position: chr29:44988972-44988720 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 176
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 51, 0

Conread position: 309-621
Cow position: chr29:41113045-41112757 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 225
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 25, 0

Conread position: 310-573
Cow position: chr29:17301341-17301612 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 183
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 41, 28

Conread position: 310-629
Cow position: chr29:29149482-29149803 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 212
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 79, 164

Conread position: 311-558
Cow position: chr29:31674444-31674696 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 182
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 107, 120

Conread position: 316-557
Cow position: chr29:23241958-23242208 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 168
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 10, 37

Conread position: 316-632
Cow position: chr29:27588743-27589058 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 217
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 9, 26

Conread position: 321-577
Cow position: chr29:44682273-44682022 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 183
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 88, 147

Conread position: 323-627
Cow position: chr29:5409321-5409010 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 209
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 56, 129

Conread position: 325-578
Cow position: chr29:27826353-27826603 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 182
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 11, 133

Conread position: 326-628
Cow position: chr29:23244051-23243747 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 165

Conread position: 334-630
Cow position: chr29:17296968-17297269 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 192
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 53, 253

Conread position: 336-625
Cow position: chr29:2055899-2056189 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 191
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 53, 20

Conread position: 342-634
Cow position: chr29:29314810-29314517 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 206
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 79, 255

Conread position: 370-627
Cow position: chr29:34359107-34358848 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 193
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 51, 236

Conread position: 381-630
Cow position: chr29:26559356-26559111 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 170
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 21, 45

Conread position: 387-620
Cow position: chr29:7624074-7624301 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 165
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 62, 15

Conread position: 388-623
Cow position: chr29:1007707-1007948 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 163
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 27, 118

Conread position: 406-625
Cow position: chr29:20770256-20770472 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 57, 124

Conread position: 415-568
Cow position: chr29:18012476-18012631 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 112
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 417-627
Cow position: chr29:30548697-30548906 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 144
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 43, 188

Conread position: 417-632
Cow position: chr29:28840077-28840291 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 143
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 41, 183

Conread position: 422-630
Cow position: chr29:23220573-23220367 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 145
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 39, 142

Conread position: 428-619
Cow position: chr29:38980136-38979953 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 86, 35

Conread position: 428-625
Cow position: chr29:23825286-23825080 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 19, 0

Conread position: 428-625
Cow position: chr29:38978464-38978661 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 28, 133

Conread position: 430-627
Cow position: chr29:29923639-29923442 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 140
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 28, 54

Show alignments to all cow chromosomes.