Cow genome map
| Conread name: | recc2802c_j11.y1 |
| Conread position: | 146-310 |
| Cow position: | chr1:38205481-38205651 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 7, 94 |
| Conread position: | 148-324 |
| Cow position: | chr1:97622209-97622024 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 94 |
| Conread position: | 148-327 |
| Cow position: | chr1:33921270-33921082 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 12, 90 |
| Conread position: | 148-327 |
| Cow position: | chr1:58825552-58825727 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 5, 16 |
| Conread position: | 148-337 |
| Cow position: | chr1:39026049-39026233 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 78 |
| Conread position: | 150-330 |
| Cow position: | chr1:5278400-5278218 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 71, 87 |
| Conread position: | 152-323 |
| Cow position: | chr1:70416145-70416322 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 18, 84 |
| Conread position: | 152-324 |
| Cow position: | chr1:45925055-45925230 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 18, 63 |
| Conread position: | 155-319 |
| Cow position: | chr1:53920606-53920776 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 72, 164 |
| Conread position: | 155-328 |
| Cow position: | chr1:10953100-10953267 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 155-346 |
| Cow position: | chr1:85594669-85594476 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 108, 78 |
| Conread position: | 157-287 |
| Cow position: | chr1:28678543-28678676 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 159-317 |
| Cow position: | chr1:54217039-54217204 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 9, 77 |
| Conread position: | 159-325 |
| Cow position: | chr1:44746886-44747050 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 159-337 |
| Cow position: | chr1:66355691-66355506 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 63, 77 |
| Conread position: | 163-319 |
| Cow position: | chr1:765236-765071 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 11, 73 |
| Conread position: | 164-284 |
| Cow position: | chr1:13195403-13195283 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 10, 70 |
| Conread position: | 164-300 |
| Cow position: | chr1:29975572-29975441 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 6, 70 |
| Conread position: | 164-325 |
| Cow position: | chr1:43789883-43790049 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 37 |
| Conread position: | 164-325 |
| Cow position: | chr1:90423054-90422892 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 63, 132 |
| Conread position: | 166-286 |
| Cow position: | chr1:29337945-29338067 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 166-287 |
| Cow position: | chr1:64189531-64189654 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 166-288 |
| Cow position: | chr1:80764505-80764381 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 166-289 |
| Cow position: | chr1:23099933-23100056 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 42, 68 |
| Conread position: | 166-289 |
| Cow position: | chr1:26531553-26531426 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 166-289 |
| Cow position: | chr1:35843896-35843771 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 166-289 |
| Cow position: | chr1:69415679-69415555 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 56, 69 |
| Conread position: | 166-289 |
| Cow position: | chr1:70533907-70533783 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 15 |
| Conread position: | 166-289 |
| Cow position: | chr1:76096469-76096588 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 166-289 |
| Cow position: | chr1:93031734-93031609 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 166-290 |
| Cow position: | chr1:15691365-15691485 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 89, 67 |
| Conread position: | 166-307 |
| Cow position: | chr1:95765062-95764915 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 60, 69 |
| Conread position: | 166-310 |
| Cow position: | chr1:71136183-71136331 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 166-310 |
| Cow position: | chr1:80384733-80384582 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 166-318 |
| Cow position: | chr1:82378822-82378980 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 43, 35 |
| Conread position: | 166-319 |
| Cow position: | chr1:49347214-49347369 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 118, 72 |
| Conread position: | 166-321 |
| Cow position: | chr1:74947087-74946929 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 166-321 |
| Cow position: | chr1:90390352-90390188 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 40, 72 |
| Conread position: | 166-323 |
| Cow position: | chr1:88910871-88910711 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 73 |
| Conread position: | 166-325 |
| Cow position: | chr1:12227070-12226904 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 166-326 |
| Cow position: | chr1:20581974-20582138 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 166-326 |
| Cow position: | chr1:57119316-57119151 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 39 |
| Conread position: | 166-327 |
| Cow position: | chr1:2997978-2998148 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 166-328 |
| Cow position: | chr1:54289162-54288992 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 40, 71 |
| Conread position: | 166-328 |
| Cow position: | chr1:62732603-62732764 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 118, 67 |
| Conread position: | 166-330 |
| Cow position: | chr1:36897121-36896965 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 115, 18 |
| Conread position: | 166-331 |
| Cow position: | chr1:64624797-64624626 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 77 |
| Conread position: | 166-332 |
| Cow position: | chr1:18414436-18414270 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 61, 39 |
| Conread position: | 166-332 |
| Cow position: | chr1:22777513-22777340 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 61, 70 |
| Conread position: | 166-332 |
| Cow position: | chr1:75998437-75998268 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 61, 87 |
| Conread position: | 166-333 |
| Cow position: | chr1:30066649-30066819 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 42, 78 |
| Conread position: | 166-334 |
| Cow position: | chr1:31390559-31390387 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 78 |
| Conread position: | 166-335 |
| Cow position: | chr1:46006175-46006004 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 42, 72 |
| Conread position: | 166-337 |
| Cow position: | chr1:82076608-82076781 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 58, 70 |
| Conread position: | 166-346 |
| Cow position: | chr1:54125194-54125008 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 166-394 |
| Cow position: | chr1:15902524-15902762 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 42, 71 |
| Conread position: | 167-284 |
| Cow position: | chr1:75347656-75347775 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 167-289 |
| Cow position: | chr1:50261896-50261773 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 56, 69 |
| Conread position: | 167-296 |
| Cow position: | chr1:72732072-72732203 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 42, 71 |
| Conread position: | 168-326 |
| Cow position: | chr1:26688439-26688276 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 59, 31 |
| Conread position: | 170-286 |
| Cow position: | chr1:31190076-31189961 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 170-292 |
| Cow position: | chr1:92981312-92981436 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 53, 64 |
| Conread position: | 170-309 |
| Cow position: | chr1:51257049-51257194 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 18, 67 |
| Conread position: | 170-330 |
| Cow position: | chr1:71782632-71782469 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 56, 38 |
| Conread position: | 170-334 |
| Cow position: | chr1:51904303-51904137 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 115, 63 |
| Conread position: | 170-336 |
| Cow position: | chr1:85141700-85141534 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 36, 7 |
| Conread position: | 171-328 |
| Cow position: | chr1:46205846-46206008 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 172-342 |
| Cow position: | chr1:61225322-61225487 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 99, 53 |
| Conread position: | 174-309 |
| Cow position: | chr1:44086362-44086223 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 62 |
| Conread position: | 180-289 |
| Cow position: | chr1:25793395-25793284 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 184-329 |
| Cow position: | chr1:67480108-67480252 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 186-319 |
| Cow position: | chr1:57252232-57252364 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 53 |
| Conread position: | 199-330 |
| Cow position: | chr1:4385416-4385548 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 30, 8 |
| Conread position: | 202-326 |
| Cow position: | chr1:50307932-50307806 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
Show alignments to all cow chromosomes.