Cow genome map
| Conread name: | recc2802c_j11.y1 |
| Conread position: | 146-325 |
| Cow position: | chr10:19704533-19704345 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 146-338 |
| Cow position: | chr10:42454096-42454293 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 94 |
| Conread position: | 148-317 |
| Cow position: | chr10:49586485-49586307 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 90 |
| Conread position: | 152-282 |
| Cow position: | chr10:53762129-53762002 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 152-326 |
| Cow position: | chr10:16683821-16683643 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 153-288 |
| Cow position: | chr10:38449324-38449188 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 17, 82 |
| Conread position: | 153-328 |
| Cow position: | chr10:61113177-61113356 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 26, 12 |
| Conread position: | 153-342 |
| Cow position: | chr10:11316941-11317136 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 157-295 |
| Cow position: | chr10:6490773-6490631 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 80 |
| Conread position: | 159-289 |
| Cow position: | chr10:64364210-64364343 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 48, 78 |
| Conread position: | 159-320 |
| Cow position: | chr10:38518635-38518475 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 14, 70 |
| Conread position: | 159-325 |
| Cow position: | chr10:24786101-24786274 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 10, 54 |
| Conread position: | 162-335 |
| Cow position: | chr10:65130487-65130308 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 8, 73 |
| Conread position: | 163-332 |
| Cow position: | chr10:52589683-52589506 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 48, 13 |
| Conread position: | 164-331 |
| Cow position: | chr10:32560699-32560874 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 44, 73 |
| Conread position: | 166-284 |
| Cow position: | chr10:36498213-36498331 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 42, 69 |
| Conread position: | 166-287 |
| Cow position: | chr10:52069973-52069851 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 166-288 |
| Cow position: | chr10:15874074-15873952 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 61, 102 |
| Conread position: | 166-288 |
| Cow position: | chr10:48255224-48255099 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 42, 76 |
| Conread position: | 166-289 |
| Cow position: | chr10:26620555-26620435 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 28 |
| Conread position: | 166-289 |
| Cow position: | chr10:41984886-41984761 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 71 |
| Conread position: | 166-304 |
| Cow position: | chr10:23096779-23096635 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 74 |
| Conread position: | 166-310 |
| Cow position: | chr10:1041202-1041349 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 166-310 |
| Cow position: | chr10:58608103-58608254 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 166-318 |
| Cow position: | chr10:19601832-19601676 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 118, 67 |
| Conread position: | 166-321 |
| Cow position: | chr10:8413050-8412891 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 166-322 |
| Cow position: | chr10:52889234-52889074 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 57, 71 |
| Conread position: | 166-323 |
| Cow position: | chr10:23404203-23404363 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 166-324 |
| Cow position: | chr10:10124344-10124508 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 63, 151 |
| Conread position: | 166-324 |
| Cow position: | chr10:15391492-15391655 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 57, 69 |
| Conread position: | 166-325 |
| Cow position: | chr10:23948918-23948752 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 166-325 |
| Cow position: | chr10:61426734-61426574 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 61, 130 |
| Conread position: | 166-326 |
| Cow position: | chr10:39081399-39081562 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 119, 19 |
| Conread position: | 166-326 |
| Cow position: | chr10:62516883-62517050 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 166-328 |
| Cow position: | chr10:11404135-11403970 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 58, 32 |
| Conread position: | 166-328 |
| Cow position: | chr10:52244646-52244477 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 57, 68 |
| Conread position: | 166-328 |
| Cow position: | chr10:69225927-69226098 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 58, 17 |
| Conread position: | 166-330 |
| Cow position: | chr10:49624768-49624939 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 166-343 |
| Cow position: | chr10:29689331-29689149 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 55, 70 |
| Conread position: | 166-346 |
| Cow position: | chr10:19590762-19590577 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 71 |
| Conread position: | 166-354 |
| Cow position: | chr10:30741381-30741568 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 10, 15 |
| Conread position: | 167-329 |
| Cow position: | chr10:65072114-65071947 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 55, 69 |
| Conread position: | 167-341 |
| Cow position: | chr10:7908703-7908522 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 15, 77 |
| Conread position: | 167-359 |
| Cow position: | chr10:20952137-20952329 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 118, 66 |
| Conread position: | 170-288 |
| Cow position: | chr10:20109941-20109825 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 80, 63 |
| Conread position: | 170-289 |
| Cow position: | chr10:2267041-2266921 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 67 |
| Conread position: | 170-320 |
| Cow position: | chr10:16649925-16649772 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 170-324 |
| Cow position: | chr10:8760155-8760001 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 115, 63 |
| Conread position: | 170-327 |
| Cow position: | chr10:9341731-9341567 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 49, 81 |
| Conread position: | 170-328 |
| Cow position: | chr10:68251818-68251981 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 52, 22 |
| Conread position: | 170-333 |
| Cow position: | chr10:6038333-6038167 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 170-347 |
| Cow position: | chr10:68566184-68566360 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 53, 66 |
| Conread position: | 174-324 |
| Cow position: | chr10:6568240-6568390 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 49, 62 |
| Conread position: | 180-355 |
| Cow position: | chr10:11497236-11497407 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 46, 56 |
| Conread position: | 198-318 |
| Cow position: | chr10:69532003-69532122 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 223-327 |
| Cow position: | chr10:11086249-11086352 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 85 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
Show alignments to all cow chromosomes.