Cow genome map
| Conread name: | recc2802c_j11.y1 |
| Conread position: | 145-275 |
| Cow position: | chr11:85036030-85035894 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 12, 94 |
| Conread position: | 146-289 |
| Cow position: | chr11:50953579-50953431 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 148-332 |
| Cow position: | chr11:53445762-53445952 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 26, 100 |
| Conread position: | 152-335 |
| Cow position: | chr11:5648737-5648922 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 132, 75 |
| Conread position: | 153-357 |
| Cow position: | chr11:6729659-6729865 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 12, 86 |
| Conread position: | 155-327 |
| Cow position: | chr11:34136497-34136677 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 15, 82 |
| Conread position: | 155-347 |
| Cow position: | chr11:51745345-51745536 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 72, 86 |
| Conread position: | 157-287 |
| Cow position: | chr11:38845265-38845135 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 12, 77 |
| Conread position: | 159-289 |
| Cow position: | chr11:31422730-31422863 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 78 |
| Conread position: | 159-292 |
| Cow position: | chr11:50951556-50951690 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 10, 76 |
| Conread position: | 159-321 |
| Cow position: | chr11:41272136-41272308 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 9, 79 |
| Conread position: | 159-330 |
| Cow position: | chr11:77008041-77008212 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 68, 82 |
| Conread position: | 159-332 |
| Cow position: | chr11:5188128-5188304 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 11, 78 |
| Conread position: | 159-362 |
| Cow position: | chr11:40269596-40269386 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 5, 26 |
| Conread position: | 163-289 |
| Cow position: | chr11:14941604-14941478 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 60, 15 |
| Conread position: | 163-310 |
| Cow position: | chr11:45553763-45553911 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 47, 38 |
| Conread position: | 163-317 |
| Cow position: | chr11:24625848-24626003 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 122, 70 |
| Conread position: | 163-330 |
| Cow position: | chr11:40553845-40554015 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 61, 7 |
| Conread position: | 163-336 |
| Cow position: | chr11:53141709-53141538 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 22 |
| Conread position: | 164-289 |
| Cow position: | chr11:19606318-19606444 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 10, 71 |
| Conread position: | 164-289 |
| Cow position: | chr11:44815510-44815636 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 164-330 |
| Cow position: | chr11:56796525-56796352 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 73 |
| Conread position: | 166-289 |
| Cow position: | chr11:373138-373012 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 7, 72 |
| Conread position: | 166-289 |
| Cow position: | chr11:47193522-47193646 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 60, 12 |
| Conread position: | 166-289 |
| Cow position: | chr11:47565931-47565805 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 166-300 |
| Cow position: | chr11:61427601-61427736 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 43 |
| Conread position: | 166-310 |
| Cow position: | chr11:9055968-9056115 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 122, 67 |
| Conread position: | 166-320 |
| Cow position: | chr11:19259506-19259344 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 166-320 |
| Cow position: | chr11:19501976-19502136 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 58, 39 |
| Conread position: | 166-322 |
| Cow position: | chr11:63508421-63508581 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 119, 67 |
| Conread position: | 166-323 |
| Cow position: | chr11:54244681-54244845 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 61, 39 |
| Conread position: | 166-324 |
| Cow position: | chr11:18913175-18913331 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 166-325 |
| Cow position: | chr11:69402241-69402078 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 124, 67 |
| Conread position: | 166-326 |
| Cow position: | chr11:32438944-32438779 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 60, 70 |
| Conread position: | 166-327 |
| Cow position: | chr11:43646405-43646235 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 42, 71 |
| Conread position: | 166-328 |
| Cow position: | chr11:21136821-21136990 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 166-328 |
| Cow position: | chr11:26468155-26468317 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 19 |
| Conread position: | 166-330 |
| Cow position: | chr11:40275594-40275423 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 166-330 |
| Cow position: | chr11:40279086-40278915 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 166-334 |
| Cow position: | chr11:11752510-11752334 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 43, 76 |
| Conread position: | 166-335 |
| Cow position: | chr11:696341-696175 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 61, 127 |
| Conread position: | 166-337 |
| Cow position: | chr11:60985270-60985098 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 70 |
| Conread position: | 166-345 |
| Cow position: | chr11:44609572-44609750 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 58, 33 |
| Conread position: | 166-352 |
| Cow position: | chr11:52832714-52832523 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 61, 75 |
| Conread position: | 166-374 |
| Cow position: | chr11:62574002-62573793 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 42, 72 |
| Conread position: | 168-324 |
| Cow position: | chr11:11460484-11460643 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 117, 65 |
| Conread position: | 168-333 |
| Cow position: | chr11:67236406-67236576 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 5, 71 |
| Conread position: | 169-292 |
| Cow position: | chr11:49218338-49218212 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 39, 68 |
| Conread position: | 169-329 |
| Cow position: | chr11:32072155-32072321 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 38, 65 |
| Conread position: | 170-310 |
| Cow position: | chr11:8828621-8828474 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 53, 66 |
| Conread position: | 170-335 |
| Cow position: | chr11:76392011-76391843 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 23, 67 |
| Conread position: | 170-340 |
| Cow position: | chr11:34642222-34642048 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 53, 66 |
| Conread position: | 170-351 |
| Cow position: | chr11:45889970-45890158 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 57, 177 |
| Conread position: | 170-369 |
| Cow position: | chr11:42519745-42519950 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 55, 65 |
| Conread position: | 173-327 |
| Cow position: | chr11:54058005-54058166 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 174-289 |
| Cow position: | chr11:22009372-22009254 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 34, 62 |
| Conread position: | 178-289 |
| Cow position: | chr11:76007399-76007511 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 180-348 |
| Cow position: | chr11:13039155-13038988 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 47, 54 |
| Conread position: | 191-326 |
| Cow position: | chr11:76851805-76851664 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 34, 45 |
Show alignments to all cow chromosomes.