Cow genome map
| Conread name: | recc2802c_j11.y1 |
| Conread position: | 142-326 |
| Cow position: | chr13:57341304-57341496 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 10, 51 |
| Conread position: | 144-329 |
| Cow position: | chr13:1958987-1958798 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 79, 17 |
| Conread position: | 145-322 |
| Cow position: | chr13:12233471-12233656 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 17, 33 |
| Conread position: | 148-284 |
| Cow position: | chr13:58348063-58347926 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 79, 105 |
| Conread position: | 148-331 |
| Cow position: | chr13:20156465-20156281 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 78, 147 |
| Conread position: | 151-319 |
| Cow position: | chr13:8822840-8822671 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 7, 70 |
| Conread position: | 152-305 |
| Cow position: | chr13:43194144-43193986 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 153-320 |
| Cow position: | chr13:7010445-7010275 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 12, 18 |
| Conread position: | 155-288 |
| Cow position: | chr13:54564663-54564801 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 92 |
| Conread position: | 155-327 |
| Cow position: | chr13:30271294-30271117 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 10, 16 |
| Conread position: | 155-332 |
| Cow position: | chr13:25207086-25206906 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 19, 82 |
| Conread position: | 156-332 |
| Cow position: | chr13:18665711-18665527 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 18, 82 |
| Conread position: | 159-289 |
| Cow position: | chr13:52569034-52569168 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 159-326 |
| Cow position: | chr13:12745640-12745466 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 25, 77 |
| Conread position: | 159-332 |
| Cow position: | chr13:29820238-29820417 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 9, 161 |
| Conread position: | 160-325 |
| Cow position: | chr13:21403442-21403607 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 10, 37 |
| Conread position: | 161-329 |
| Cow position: | chr13:9083042-9083208 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 27, 77 |
| Conread position: | 163-286 |
| Cow position: | chr13:11171199-11171076 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 55, 74 |
| Conread position: | 163-320 |
| Cow position: | chr13:34995365-34995530 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 45, 74 |
| Conread position: | 164-289 |
| Cow position: | chr13:25058117-25057990 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 164-325 |
| Cow position: | chr13:43167069-43167237 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 165-322 |
| Cow position: | chr13:22075631-22075468 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 62, 15 |
| Conread position: | 165-344 |
| Cow position: | chr13:49200598-49200417 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 43, 72 |
| Conread position: | 166-286 |
| Cow position: | chr13:23265693-23265571 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 54, 75 |
| Conread position: | 166-287 |
| Cow position: | chr13:32904739-32904617 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 60, 106 |
| Conread position: | 166-287 |
| Cow position: | chr13:58620987-58621107 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 166-289 |
| Cow position: | chr13:20466324-20466450 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 42, 71 |
| Conread position: | 166-289 |
| Cow position: | chr13:21627925-21628045 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 166-310 |
| Cow position: | chr13:31852723-31852577 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 118, 56 |
| Conread position: | 166-318 |
| Cow position: | chr13:32657340-32657184 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 131 |
| Conread position: | 166-320 |
| Cow position: | chr13:54814951-54815114 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 166-322 |
| Cow position: | chr13:47502754-47502910 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 124, 50 |
| Conread position: | 166-323 |
| Cow position: | chr13:10932511-10932352 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 124, 62 |
| Conread position: | 166-325 |
| Cow position: | chr13:20180374-20180216 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 166-326 |
| Cow position: | chr13:47188397-47188237 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 55, 42 |
| Conread position: | 166-335 |
| Cow position: | chr13:6621631-6621806 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 53, 32 |
| Conread position: | 166-335 |
| Cow position: | chr13:14717379-14717549 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 56, 70 |
| Conread position: | 166-335 |
| Cow position: | chr13:26522976-26523152 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 39, 71 |
| Conread position: | 166-340 |
| Cow position: | chr13:17796328-17796146 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 166-343 |
| Cow position: | chr13:11794401-11794227 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 166-352 |
| Cow position: | chr13:33281966-33281774 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 56, 70 |
| Conread position: | 166-355 |
| Cow position: | chr13:54094771-54094579 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 71 |
| Conread position: | 167-332 |
| Cow position: | chr13:11768084-11768255 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 70 |
| Conread position: | 167-332 |
| Cow position: | chr13:17991618-17991448 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 56, 69 |
| Conread position: | 170-318 |
| Cow position: | chr13:11463396-11463548 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 114, 63 |
| Conread position: | 170-320 |
| Cow position: | chr13:661684-661837 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 115, 57 |
| Conread position: | 171-334 |
| Cow position: | chr13:40464186-40464015 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 72 |
| Conread position: | 172-284 |
| Cow position: | chr13:26508438-26508324 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 64 |
| Conread position: | 172-330 |
| Cow position: | chr13:34761635-34761474 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 112, 61 |
| Conread position: | 174-332 |
| Cow position: | chr13:46291611-46291443 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 175-289 |
| Cow position: | chr13:56270285-56270402 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 34, 62 |
| Conread position: | 175-289 |
| Cow position: | chr13:56281187-56281070 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 34, 62 |
| Conread position: | 181-331 |
| Cow position: | chr13:26507880-26507726 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 55 |
| Conread position: | 181-334 |
| Cow position: | chr13:10754027-10753875 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 49, 132 |
| Conread position: | 182-327 |
| Cow position: | chr13:32773298-32773157 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 103, 51 |
| Conread position: | 185-340 |
| Cow position: | chr13:21726088-21725925 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 38, 136 |
Show alignments to all cow chromosomes.