Cow genome map
| Conread name: | recc2802c_j11.y1 |
| Conread position: | 148-344 |
| Cow position: | chr3:51146688-51146493 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 17 |
| Conread position: | 152-289 |
| Cow position: | chr3:3736284-3736425 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 153-330 |
| Cow position: | chr3:50281767-50281582 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 12, 92 |
| Conread position: | 159-310 |
| Cow position: | chr3:18214146-18213987 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 159-310 |
| Cow position: | chr3:36100831-36100981 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 159-322 |
| Cow position: | chr3:31247660-31247823 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 64, 11 |
| Conread position: | 159-324 |
| Cow position: | chr3:23091983-23091814 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 11, 75 |
| Conread position: | 159-332 |
| Cow position: | chr3:64536568-64536400 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 11, 71 |
| Conread position: | 163-317 |
| Cow position: | chr3:57830086-57829926 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 10, 77 |
| Conread position: | 163-330 |
| Cow position: | chr3:61116856-61116692 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 45, 131 |
| Conread position: | 164-324 |
| Cow position: | chr3:37485799-37485636 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 6, 22 |
| Conread position: | 165-285 |
| Cow position: | chr3:8457654-8457776 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 62, 71 |
| Conread position: | 166-289 |
| Cow position: | chr3:22171378-22171499 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 166-289 |
| Cow position: | chr3:54340421-54340297 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 166-289 |
| Cow position: | chr3:68262764-68262888 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 71 |
| Conread position: | 166-290 |
| Cow position: | chr3:24300361-24300487 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 166-292 |
| Cow position: | chr3:14505914-14505786 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 60, 71 |
| Conread position: | 166-295 |
| Cow position: | chr3:36204553-36204685 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 61, 70 |
| Conread position: | 166-296 |
| Cow position: | chr3:46094824-46094955 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 61, 14 |
| Conread position: | 166-309 |
| Cow position: | chr3:73436440-73436290 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 166-321 |
| Cow position: | chr3:41550374-41550213 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 166-322 |
| Cow position: | chr3:15655146-15654988 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 42, 71 |
| Conread position: | 166-323 |
| Cow position: | chr3:51780990-51780832 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 124, 61 |
| Conread position: | 166-324 |
| Cow position: | chr3:15221517-15221353 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 166-324 |
| Cow position: | chr3:65771331-65771171 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 119, 67 |
| Conread position: | 166-325 |
| Cow position: | chr3:12255481-12255637 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 57, 22 |
| Conread position: | 166-325 |
| Cow position: | chr3:53588383-53588223 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 166-325 |
| Cow position: | chr3:73741869-73741703 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 166-326 |
| Cow position: | chr3:48629589-48629427 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 71 |
| Conread position: | 166-327 |
| Cow position: | chr3:25076166-25075999 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 166-328 |
| Cow position: | chr3:26741031-26740871 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 166-328 |
| Cow position: | chr3:37186827-37186990 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 50, 70 |
| Conread position: | 166-330 |
| Cow position: | chr3:9074345-9074174 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 61, 70 |
| Conread position: | 166-330 |
| Cow position: | chr3:18216765-18216605 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 121, 47 |
| Conread position: | 166-339 |
| Cow position: | chr3:8746231-8746055 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 60, 70 |
| Conread position: | 167-323 |
| Cow position: | chr3:11920032-11919875 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 119, 66 |
| Conread position: | 168-336 |
| Cow position: | chr3:62628262-62628089 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 68 |
| Conread position: | 169-320 |
| Cow position: | chr3:43654110-43653956 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 110, 53 |
| Conread position: | 169-320 |
| Cow position: | chr3:62798781-62798627 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 40, 68 |
| Conread position: | 169-336 |
| Cow position: | chr3:61411124-61411297 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 54, 68 |
| Conread position: | 169-346 |
| Cow position: | chr3:41718395-41718579 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 67 |
| Conread position: | 170-310 |
| Cow position: | chr3:55991864-55991718 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 36, 72 |
| Conread position: | 170-310 |
| Cow position: | chr3:61322845-61322988 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 52, 66 |
| Conread position: | 170-329 |
| Cow position: | chr3:5419859-5419699 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 66 |
| Conread position: | 170-330 |
| Cow position: | chr3:74611568-74611734 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 66 |
| Conread position: | 170-335 |
| Cow position: | chr3:9629889-9630057 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 116, 35 |
| Conread position: | 170-357 |
| Cow position: | chr3:25091038-25091229 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 98, 63 |
| Conread position: | 194-318 |
| Cow position: | chr3:44838287-44838412 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 29, 42 |
Show alignments to all cow chromosomes.