Cow genome map
| Conread name: | recc2802c_j11.y1 |
| Conread position: | 153-325 |
| Cow position: | chr4:6166299-6166131 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 53, 62 |
| Conread position: | 154-319 |
| Cow position: | chr4:20279492-20279657 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 11, 134 |
| Conread position: | 155-310 |
| Cow position: | chr4:47445920-47446075 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 70, 5 |
| Conread position: | 155-345 |
| Cow position: | chr4:35471324-35471520 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 17, 11 |
| Conread position: | 159-310 |
| Cow position: | chr4:50769758-50769599 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 159-333 |
| Cow position: | chr4:36945183-36945008 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 11 |
| Conread position: | 163-289 |
| Cow position: | chr4:19334867-19334740 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 86, 68 |
| Conread position: | 164-289 |
| Cow position: | chr4:52226019-52226145 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 16 |
| Conread position: | 166-288 |
| Cow position: | chr4:51123076-51123208 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 39, 83 |
| Conread position: | 166-289 |
| Cow position: | chr4:24432996-24433121 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 166-289 |
| Cow position: | chr4:65167849-65167726 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 71, 39 |
| Conread position: | 166-294 |
| Cow position: | chr4:60030923-60031050 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 166-296 |
| Cow position: | chr4:9198981-9199113 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 45, 15 |
| Conread position: | 166-304 |
| Cow position: | chr4:12697655-12697791 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 91, 61 |
| Conread position: | 166-310 |
| Cow position: | chr4:51433427-51433578 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 166-310 |
| Cow position: | chr4:65841749-65841605 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 42, 70 |
| Conread position: | 166-319 |
| Cow position: | chr4:45115762-45115602 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 60, 70 |
| Conread position: | 166-321 |
| Cow position: | chr4:18956641-18956487 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 44, 71 |
| Conread position: | 166-321 |
| Cow position: | chr4:21073135-21072976 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 119, 67 |
| Conread position: | 166-323 |
| Cow position: | chr4:10836193-10836357 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 141 |
| Conread position: | 166-323 |
| Cow position: | chr4:26373656-26373499 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 58, 73 |
| Conread position: | 166-323 |
| Cow position: | chr4:37035218-37035054 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 58, 70 |
| Conread position: | 166-324 |
| Cow position: | chr4:6208478-6208636 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 43, 141 |
| Conread position: | 166-324 |
| Cow position: | chr4:45871849-45871685 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 42, 71 |
| Conread position: | 166-328 |
| Cow position: | chr4:10837363-10837196 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 64, 25 |
| Conread position: | 166-328 |
| Cow position: | chr4:23494938-23495093 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 62, 86 |
| Conread position: | 166-328 |
| Cow position: | chr4:44279919-44279749 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 59, 70 |
| Conread position: | 166-332 |
| Cow position: | chr4:17304376-17304202 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 17 |
| Conread position: | 166-335 |
| Cow position: | chr4:27997704-27997877 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 166-336 |
| Cow position: | chr4:20066201-20066028 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 121, 67 |
| Conread position: | 166-337 |
| Cow position: | chr4:20279345-20279516 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 168-319 |
| Cow position: | chr4:44665353-44665195 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 168-321 |
| Cow position: | chr4:34762315-34762157 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 48, 100 |
| Conread position: | 168-323 |
| Cow position: | chr4:17478282-17478125 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 5, 49 |
| Conread position: | 169-323 |
| Cow position: | chr4:23758823-23758981 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 57, 148 |
| Conread position: | 169-351 |
| Cow position: | chr4:23166921-23167104 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 36, 148 |
| Conread position: | 170-309 |
| Cow position: | chr4:65406348-65406210 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 115, 53 |
| Conread position: | 170-310 |
| Cow position: | chr4:24415581-24415721 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 57, 117 |
| Conread position: | 170-311 |
| Cow position: | chr4:1374379-1374522 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 68 |
| Conread position: | 170-321 |
| Cow position: | chr4:39767371-39767527 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 62, 148 |
| Conread position: | 170-323 |
| Cow position: | chr4:5002783-5002936 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 54, 66 |
| Conread position: | 170-324 |
| Cow position: | chr4:2121380-2121217 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 170-328 |
| Cow position: | chr4:9800023-9800187 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 57, 72 |
| Conread position: | 170-330 |
| Cow position: | chr4:30671393-30671227 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 57, 11 |
| Conread position: | 170-330 |
| Cow position: | chr4:65604451-65604288 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 53, 66 |
| Conread position: | 170-332 |
| Cow position: | chr4:62411874-62412043 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 57, 80 |
| Conread position: | 170-334 |
| Cow position: | chr4:20599955-20600126 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 36, 6 |
| Conread position: | 180-289 |
| Cow position: | chr4:21862841-21862728 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 57 |
| Conread position: | 180-289 |
| Cow position: | chr4:53616860-53616969 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 22, 52 |
| Conread position: | 186-328 |
| Cow position: | chr4:63955109-63954965 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 23, 51 |
| Conread position: | 199-309 |
| Cow position: | chr4:38181957-38182070 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 90, 34 |
Show alignments to all cow chromosomes.