Cow genome map
| Conread name: | recc2802c_j11.y1 |
| Conread position: | 134-332 |
| Cow position: | chr5:21531090-21530886 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 19, 106 |
| Conread position: | 148-327 |
| Cow position: | chr5:28946032-28945843 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 8, 92 |
| Conread position: | 149-327 |
| Cow position: | chr5:66190019-66190203 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 11, 41 |
| Conread position: | 152-288 |
| Cow position: | chr5:41945885-41946022 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 106 |
| Conread position: | 152-319 |
| Cow position: | chr5:39753619-39753446 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 153-325 |
| Cow position: | chr5:41605775-41605600 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 21, 88 |
| Conread position: | 153-328 |
| Cow position: | chr5:15837853-15837675 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 40 |
| Conread position: | 154-341 |
| Cow position: | chr5:25919594-25919401 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 41, 52 |
| Conread position: | 155-325 |
| Cow position: | chr5:27293629-27293454 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 68, 15 |
| Conread position: | 159-317 |
| Cow position: | chr5:42782682-42782520 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 164-310 |
| Cow position: | chr5:58748818-58748969 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 59, 72 |
| Conread position: | 165-289 |
| Cow position: | chr5:47680968-47680841 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 58, 71 |
| Conread position: | 165-305 |
| Cow position: | chr5:6987499-6987642 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 58, 106 |
| Conread position: | 166-288 |
| Cow position: | chr5:7433109-7432984 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 59, 17 |
| Conread position: | 166-288 |
| Cow position: | chr5:19131901-19132026 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 55, 71 |
| Conread position: | 166-289 |
| Cow position: | chr5:15483082-15483211 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 166-289 |
| Cow position: | chr5:70169648-70169534 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 166-290 |
| Cow position: | chr5:58320420-58320294 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 44, 70 |
| Conread position: | 166-292 |
| Cow position: | chr5:17267841-17267710 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 58, 70 |
| Conread position: | 166-300 |
| Cow position: | chr5:18553947-18554078 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 166-304 |
| Cow position: | chr5:23536231-23536371 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 166-310 |
| Cow position: | chr5:18276532-18276679 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 116, 67 |
| Conread position: | 166-310 |
| Cow position: | chr5:36825371-36825516 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 61, 86 |
| Conread position: | 166-310 |
| Cow position: | chr5:39442348-39442498 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 58, 77 |
| Conread position: | 166-310 |
| Cow position: | chr5:63328842-63328698 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 57, 71 |
| Conread position: | 166-318 |
| Cow position: | chr5:27411351-27411196 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 42, 71 |
| Conread position: | 166-321 |
| Cow position: | chr5:36028094-36027936 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 57, 27 |
| Conread position: | 166-321 |
| Cow position: | chr5:42049735-42049892 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 43, 17 |
| Conread position: | 166-322 |
| Cow position: | chr5:25681305-25681147 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 119, 50 |
| Conread position: | 166-323 |
| Cow position: | chr5:54090086-54090247 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 56, 70 |
| Conread position: | 166-324 |
| Cow position: | chr5:39695702-39695866 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 70 |
| Conread position: | 166-325 |
| Cow position: | chr5:17028145-17028306 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 42, 71 |
| Conread position: | 166-328 |
| Cow position: | chr5:1349742-1349573 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 70 |
| Conread position: | 166-328 |
| Cow position: | chr5:23366714-23366549 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 59, 70 |
| Conread position: | 166-328 |
| Cow position: | chr5:37272445-37272609 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 119, 67 |
| Conread position: | 166-329 |
| Cow position: | chr5:34914502-34914336 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 43, 71 |
| Conread position: | 166-330 |
| Cow position: | chr5:23527581-23527409 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 43, 72 |
| Conread position: | 166-330 |
| Cow position: | chr5:41598661-41598488 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 61, 70 |
| Conread position: | 166-332 |
| Cow position: | chr5:18695210-18695379 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 42, 71 |
| Conread position: | 166-332 |
| Cow position: | chr5:58343909-58344080 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 166-335 |
| Cow position: | chr5:75687274-75687104 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 166-336 |
| Cow position: | chr5:33341086-33340918 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 87 |
| Conread position: | 166-336 |
| Cow position: | chr5:33342814-33342645 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 61, 87 |
| Conread position: | 166-346 |
| Cow position: | chr5:72363965-72363787 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 132, 52 |
| Conread position: | 168-329 |
| Cow position: | chr5:5929511-5929674 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 40, 69 |
| Conread position: | 168-332 |
| Cow position: | chr5:21195071-21194905 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 6, 69 |
| Conread position: | 168-339 |
| Cow position: | chr5:3058971-3059149 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 170-284 |
| Cow position: | chr5:49655970-49655857 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 170-288 |
| Cow position: | chr5:17097766-17097885 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 170-289 |
| Cow position: | chr5:30333005-30333126 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 170-290 |
| Cow position: | chr5:3225921-3225803 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 170-327 |
| Cow position: | chr5:33697494-33697335 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 170-330 |
| Cow position: | chr5:41636922-41637085 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 109, 63 |
| Conread position: | 170-334 |
| Cow position: | chr5:41604678-41604849 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 173-329 |
| Cow position: | chr5:39134203-39134039 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 35, 69 |
| Conread position: | 180-331 |
| Cow position: | chr5:56385281-56385436 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 105, 53 |
| Conread position: | 201-325 |
| Cow position: | chr5:57381636-57381762 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 84, 26 |
| Conread position: | 202-327 |
| Cow position: | chr5:10450322-10450449 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
Show alignments to all cow chromosomes.