Cow genome map
| Conread name: | recc2802c_j11.y1 |
| Conread position: | 143-335 |
| Cow position: | chr6:53264756-53264563 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 72, 91 |
| Conread position: | 147-324 |
| Cow position: | chr6:3118080-3117905 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 47, 16 |
| Conread position: | 148-327 |
| Cow position: | chr6:6596617-6596798 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 26, 94 |
| Conread position: | 152-320 |
| Cow position: | chr6:19427501-19427670 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 73, 84 |
| Conread position: | 153-292 |
| Cow position: | chr6:15753894-15754035 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 14, 84 |
| Conread position: | 153-319 |
| Cow position: | chr6:20255360-20255182 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 90 |
| Conread position: | 153-320 |
| Cow position: | chr6:36892279-36892114 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 153-324 |
| Cow position: | chr6:6994901-6994729 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 154-350 |
| Cow position: | chr6:58765363-58765163 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 88 |
| Conread position: | 155-283 |
| Cow position: | chr6:29412735-29412605 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 64, 81 |
| Conread position: | 155-344 |
| Cow position: | chr6:62379757-62379946 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 7, 81 |
| Conread position: | 157-336 |
| Cow position: | chr6:48572826-48572643 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 80 |
| Conread position: | 159-289 |
| Cow position: | chr6:10400357-10400226 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 76 |
| Conread position: | 159-337 |
| Cow position: | chr6:7707190-7707376 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 64, 77 |
| Conread position: | 164-328 |
| Cow position: | chr6:16626011-16626179 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 45, 78 |
| Conread position: | 164-332 |
| Cow position: | chr6:54479089-54478918 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 6, 73 |
| Conread position: | 165-330 |
| Cow position: | chr6:25224302-25224469 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 72 |
| Conread position: | 166-289 |
| Cow position: | chr6:510238-510115 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 59, 70 |
| Conread position: | 166-289 |
| Cow position: | chr6:29649170-29649295 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 61, 70 |
| Conread position: | 166-289 |
| Cow position: | chr6:46676363-46676241 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 166-290 |
| Cow position: | chr6:64427289-64427415 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 166-301 |
| Cow position: | chr6:60503445-60503580 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 120, 67 |
| Conread position: | 166-308 |
| Cow position: | chr6:7173685-7173547 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 166-310 |
| Cow position: | chr6:53673928-53674076 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 60, 87 |
| Conread position: | 166-310 |
| Cow position: | chr6:56376284-56376137 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 166-323 |
| Cow position: | chr6:15782450-15782292 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 166-323 |
| Cow position: | chr6:48806945-48806786 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 45, 149 |
| Conread position: | 166-324 |
| Cow position: | chr6:36454532-36454366 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 43, 71 |
| Conread position: | 166-327 |
| Cow position: | chr6:37612170-37612338 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 166-327 |
| Cow position: | chr6:53939028-53939190 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 42, 71 |
| Conread position: | 166-328 |
| Cow position: | chr6:55475319-55475489 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 16 |
| Conread position: | 166-329 |
| Cow position: | chr6:6943615-6943453 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 166-330 |
| Cow position: | chr6:50034662-50034500 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 166-331 |
| Cow position: | chr6:23986397-23986229 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 42, 20 |
| Conread position: | 166-332 |
| Cow position: | chr6:59496284-59496449 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 61, 39 |
| Conread position: | 166-333 |
| Cow position: | chr6:12652272-12652437 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 43, 47 |
| Conread position: | 166-334 |
| Cow position: | chr6:24545678-24545855 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 59, 70 |
| Conread position: | 166-337 |
| Cow position: | chr6:13718828-13719007 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 166-337 |
| Cow position: | chr6:57118877-57118705 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 61, 70 |
| Conread position: | 166-377 |
| Cow position: | chr6:47192460-47192254 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 59, 77 |
| Conread position: | 167-321 |
| Cow position: | chr6:11790039-11790202 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 169-332 |
| Cow position: | chr6:4023169-4023333 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 54, 67 |
| Conread position: | 169-335 |
| Cow position: | chr6:14477217-14477386 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 40, 68 |
| Conread position: | 170-309 |
| Cow position: | chr6:43760430-43760568 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 115, 57 |
| Conread position: | 170-323 |
| Cow position: | chr6:17232383-17232228 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 65 |
| Conread position: | 170-330 |
| Cow position: | chr6:15997149-15996986 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 53, 66 |
| Conread position: | 170-332 |
| Cow position: | chr6:3078579-3078732 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 170-340 |
| Cow position: | chr6:30160387-30160562 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 53, 66 |
| Conread position: | 176-321 |
| Cow position: | chr6:1732414-1732567 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 32, 66 |
| Conread position: | 181-289 |
| Cow position: | chr6:1907599-1907709 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 55 |
| Conread position: | 194-332 |
| Cow position: | chr6:51351808-51351947 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 47 |
Show alignments to all cow chromosomes.