Cow genome map
| Conread name: | recc2802c_j11.y1 |
| Conread position: | 145-321 |
| Cow position: | chrX:39339076-39338895 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 25, 93 |
| Conread position: | 146-289 |
| Cow position: | chrX:39126354-39126503 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 148-301 |
| Cow position: | chrX:28787381-28787534 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 8, 18 |
| Conread position: | 151-346 |
| Cow position: | chrX:25388205-25388010 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 161, 76 |
| Conread position: | 152-310 |
| Cow position: | chrX:10289590-10289424 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 17, 85 |
| Conread position: | 152-317 |
| Cow position: | chrX:15049530-15049692 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 8, 19 |
| Conread position: | 153-289 |
| Cow position: | chrX:46028723-46028585 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 83 |
| Conread position: | 153-317 |
| Cow position: | chrX:18417266-18417095 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 70, 83 |
| Conread position: | 153-334 |
| Cow position: | chrX:15305263-15305069 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 155-326 |
| Cow position: | chrX:25232961-25233122 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 157-309 |
| Cow position: | chrX:23414327-23414174 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 63 |
| Conread position: | 157-338 |
| Cow position: | chrX:6676867-6677052 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 13, 81 |
| Conread position: | 159-310 |
| Cow position: | chrX:21664676-21664522 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 64, 77 |
| Conread position: | 159-319 |
| Cow position: | chrX:37186206-37186371 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 64, 51 |
| Conread position: | 164-289 |
| Cow position: | chrX:16291971-16291844 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 164-289 |
| Cow position: | chrX:29761636-29761507 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 5, 74 |
| Conread position: | 164-336 |
| Cow position: | chrX:30483960-30483780 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 165-330 |
| Cow position: | chrX:41083965-41084138 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 43, 156 |
| Conread position: | 166-284 |
| Cow position: | chrX:27176261-27176142 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 166-288 |
| Cow position: | chrX:630258-630134 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 70 |
| Conread position: | 166-289 |
| Cow position: | chrX:12304612-12304737 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 35, 72 |
| Conread position: | 166-289 |
| Cow position: | chrX:46146222-46146099 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 166-295 |
| Cow position: | chrX:2300976-2301107 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 166-302 |
| Cow position: | chrX:8103237-8103098 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 57, 14 |
| Conread position: | 166-309 |
| Cow position: | chrX:18142402-18142258 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 62, 87 |
| Conread position: | 166-310 |
| Cow position: | chrX:6674868-6674712 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 29, 75 |
| Conread position: | 166-310 |
| Cow position: | chrX:20377022-20377166 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 123, 65 |
| Conread position: | 166-310 |
| Cow position: | chrX:22326171-22326317 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 166-310 |
| Cow position: | chrX:25338239-25338387 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 166-310 |
| Cow position: | chrX:28835711-28835556 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 43, 77 |
| Conread position: | 166-319 |
| Cow position: | chrX:6041158-6041002 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 166-319 |
| Cow position: | chrX:43426346-43426502 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 166-320 |
| Cow position: | chrX:39415319-39415156 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 42, 71 |
| Conread position: | 166-321 |
| Cow position: | chrX:488730-488889 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 56, 69 |
| Conread position: | 166-322 |
| Cow position: | chrX:7497294-7497448 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 101, 67 |
| Conread position: | 166-324 |
| Cow position: | chrX:25713847-25714011 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 61, 70 |
| Conread position: | 166-324 |
| Cow position: | chrX:29874319-29874155 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 166-326 |
| Cow position: | chrX:36009861-36009697 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 58, 70 |
| Conread position: | 166-329 |
| Cow position: | chrX:2786505-2786343 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 111 |
| Conread position: | 166-330 |
| Cow position: | chrX:24259530-24259369 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 22, 75 |
| Conread position: | 166-330 |
| Cow position: | chrX:42011332-42011504 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 76 |
| Conread position: | 166-343 |
| Cow position: | chrX:32310156-32310338 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 42, 72 |
| Conread position: | 167-310 |
| Cow position: | chrX:32431676-32431822 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 167-317 |
| Cow position: | chrX:17964470-17964317 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 41, 70 |
| Conread position: | 168-289 |
| Cow position: | chrX:3951094-3951217 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 55, 68 |
| Conread position: | 168-310 |
| Cow position: | chrX:22284936-22285073 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 43, 62 |
| Conread position: | 170-284 |
| Cow position: | chrX:16419202-16419318 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 66 |
| Conread position: | 170-320 |
| Cow position: | chrX:17952920-17952763 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 56, 67 |
| Conread position: | 170-325 |
| Cow position: | chrX:27287681-27287521 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 53, 66 |
| Conread position: | 170-330 |
| Cow position: | chrX:41560210-41560054 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 170-334 |
| Cow position: | chrX:2648156-2647991 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 56, 138 |
| Conread position: | 170-345 |
| Cow position: | chrX:19678216-19678042 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 159, 63 |
| Conread position: | 170-349 |
| Cow position: | chrX:26619062-26618878 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 56, 71 |
| Conread position: | 173-338 |
| Cow position: | chrX:10959337-10959166 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 70 |
| Conread position: | 180-328 |
| Cow position: | chrX:4545287-4545135 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 182-328 |
| Cow position: | chrX:38999916-39000068 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 41, 54 |
| Conread position: | 184-320 |
| Cow position: | chrX:8323668-8323526 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 40, 52 |
Show alignments to all cow chromosomes.