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Cow genome map

           
Conread name:
           
recc2803c_c14.y1
        

               
Conread position:
               
1-162
               

               
Cow position:
               
chr5:57399024-57399186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr5:62812054-62811789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 230
               

               
Conread position:
               
1-444
               

               
Cow position:
               
chr5:2309331-2309785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 86
               

               
Conread position:
               
2-152
               

               
Cow position:
               
chr5:45854727-45854574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
2-152
               

               
Cow position:
               
chr5:56624288-56624440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
2-159
               

               
Cow position:
               
chr5:59335999-59335840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
2-160
               

               
Cow position:
               
chr5:56643294-56643136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
18, 82
               

               
Conread position:
               
2-161
               

               
Cow position:
               
chr5:55783735-55783895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
2-161
               

               
Cow position:
               
chr5:59662831-59662990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 87
               

               
Conread position:
               
2-161
               

               
Cow position:
               
chr5:62996185-62996025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
2-162
               

               
Cow position:
               
chr5:26149261-26149101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
18, 65
               

               
Conread position:
               
2-162
               

               
Cow position:
               
chr5:30492565-30492727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
2-162
               

               
Cow position:
               
chr5:55949452-55949612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
18, 85
               

               
Conread position:
               
2-167
               

               
Cow position:
               
chr5:57086836-57087001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
18, 90
               

               
Conread position:
               
2-185
               

               
Cow position:
               
chr5:43465753-43465569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
2-201
               

               
Cow position:
               
chr5:16185606-16185406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
2-201
               

               
Cow position:
               
chr5:34288028-34288222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 79
               

               
Conread position:
               
2-216
               

               
Cow position:
               
chr5:2240763-2240976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
18, 186
               

               
Conread position:
               
2-217
               

               
Cow position:
               
chr5:17828251-17828467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
18, 96
               

               
Conread position:
               
2-217
               

               
Cow position:
               
chr5:64060672-64060458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
17, 90
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr5:7177378-7177157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 83
               

               
Conread position:
               
2-228
               

               
Cow position:
               
chr5:61049560-61049333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
2-233
               

               
Cow position:
               
chr5:55965666-55965898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
2-233
               

               
Cow position:
               
chr5:60514799-60515032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
18, 144
               

               
Conread position:
               
2-234
               

               
Cow position:
               
chr5:52853193-52852966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
18, 74
               

               
Conread position:
               
2-252
               

               
Cow position:
               
chr5:34347507-34347751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
18, 152
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr5:49341809-49342074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr5:26548917-26549175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
18, 81
               

               
Conread position:
               
2-268
               

               
Cow position:
               
chr5:45405273-45405003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
18, 171
               

               
Conread position:
               
2-271
               

               
Cow position:
               
chr5:52001398-52001662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
18, 31
               

               
Conread position:
               
2-287
               

               
Cow position:
               
chr5:63241205-63240918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
17, 250
               

               
Conread position:
               
2-291
               

               
Cow position:
               
chr5:43604365-43604081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
18, 87
               

               
Conread position:
               
2-291
               

               
Cow position:
               
chr5:59626746-59627036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
18, 89
               

               
Conread position:
               
2-297
               

               
Cow position:
               
chr5:11769498-11769200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
17, 174
               

               
Conread position:
               
2-307
               

               
Cow position:
               
chr5:57372030-57371722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 251
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr5:19752527-19752226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
18, 67
               

               
Conread position:
               
2-312
               

               
Cow position:
               
chr5:61914797-61914487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
18, 222
               

               
Conread position:
               
2-317
               

               
Cow position:
               
chr5:33834266-33833956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
18, 89
               

               
Conread position:
               
2-317
               

               
Cow position:
               
chr5:71015659-71015968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
18, 63
               

               
Conread position:
               
2-328
               

               
Cow position:
               
chr5:43370967-43371294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
18, 202
               

               
Conread position:
               
2-329
               

               
Cow position:
               
chr5:12557061-12557396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
18, 84
               

               
Conread position:
               
2-331
               

               
Cow position:
               
chr5:46681497-46681814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
181, 28
               

               
Conread position:
               
2-339
               

               
Cow position:
               
chr5:33560512-33560848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
18, 74
               

               
Conread position:
               
2-339
               

               
Cow position:
               
chr5:43403135-43402790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
18, 116
               

               
Conread position:
               
2-340
               

               
Cow position:
               
chr5:12902145-12901800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 210
               

               
Conread position:
               
2-341
               

               
Cow position:
               
chr5:70678419-70678747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
20, 89
               

               
Conread position:
               
2-351
               

               
Cow position:
               
chr5:19335551-19335913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
2-353
               

               
Cow position:
               
chr5:49474328-49474670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
18, 89
               

               
Conread position:
               
2-356
               

               
Cow position:
               
chr5:64140764-64140399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
21, 89
               

               
Conread position:
               
2-359
               

               
Cow position:
               
chr5:991700-991332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
18, 81
               

               
Conread position:
               
2-359
               

               
Cow position:
               
chr5:44446649-44447002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
18, 74
               

               
Conread position:
               
2-359
               

               
Cow position:
               
chr5:73167787-73168132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
8, 82
               

               
Conread position:
               
2-367
               

               
Cow position:
               
chr5:29097588-29097219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
18, 67
               

               
Conread position:
               
2-371
               

               
Cow position:
               
chr5:49920151-49919782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
185, 222
               

               
Conread position:
               
2-377
               

               
Cow position:
               
chr5:7057171-7057550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 151
               

               
Conread position:
               
2-377
               

               
Cow position:
               
chr5:35459070-35459445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 71
               

               
Conread position:
               
2-381
               

               
Cow position:
               
chr5:66972656-66972269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 45
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chr5:44028526-44028901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
24, 90
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chr5:66582196-66581808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 116
               

               
Conread position:
               
2-390
               

               
Cow position:
               
chr5:30628927-30629324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 108
               

               
Conread position:
               
2-393
               

               
Cow position:
               
chr5:30092402-30092799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
18, 35
               

               
Conread position:
               
2-393
               

               
Cow position:
               
chr5:41009784-41010166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
18, 108
               

               
Conread position:
               
2-395
               

               
Cow position:
               
chr5:54048124-54048517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
18, 229
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr5:30178276-30178687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
19, 259
               

               
Conread position:
               
2-405
               

               
Cow position:
               
chr5:34976614-34977021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
17, 12
               

               
Conread position:
               
2-408
               

               
Cow position:
               
chr5:46512542-46512951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 36
               

               
Conread position:
               
2-409
               

               
Cow position:
               
chr5:57767762-57768150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
18, 31
               

               
Conread position:
               
2-422
               

               
Cow position:
               
chr5:50942939-50943352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
113, 17
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr5:44049926-44049495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
17, 180
               

               
Conread position:
               
2-434
               

               
Cow position:
               
chr5:26262459-26262884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 69
               

               
Conread position:
               
2-436
               

               
Cow position:
               
chr5:35969766-35969330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 192
               

               
Conread position:
               
2-442
               

               
Cow position:
               
chr5:7044480-7044929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 77
               

               
Conread position:
               
2-444
               

               
Cow position:
               
chr5:11427010-11427463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 31
               

               
Conread position:
               
2-449
               

               
Cow position:
               
chr5:5257061-5257522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 84
               

               
Conread position:
               
2-454
               

               
Cow position:
               
chr5:36868963-36868515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 126
               

               
Conread position:
               
2-455
               

               
Cow position:
               
chr5:16937808-16938239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
18, 74
               

               
Conread position:
               
2-459
               

               
Cow position:
               
chr5:25495125-25495573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
18, 29
               

               
Conread position:
               
2-460
               

               
Cow position:
               
chr5:32338735-32339211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 86
               

               
Conread position:
               
2-464
               

               
Cow position:
               
chr5:11667958-11668418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 82
               

               
Conread position:
               
2-467
               

               
Cow position:
               
chr5:57074111-57074578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 32
               

               
Conread position:
               
2-472
               

               
Cow position:
               
chr5:5856086-5855631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
18, 228
               

               
Conread position:
               
2-474
               

               
Cow position:
               
chr5:56028319-56028781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 74
               

               
Conread position:
               
2-482
               

               
Cow position:
               
chr5:1247489-1247018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 36
               

               
Conread position:
               
2-492
               

               
Cow position:
               
chr5:32394828-32394331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 72
               

               
Conread position:
               
2-492
               

               
Cow position:
               
chr5:42064433-42063936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 354
               

               
Conread position:
               
2-492
               

               
Cow position:
               
chr5:48867521-48868014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
20, 83
               

               
Conread position:
               
2-495
               

               
Cow position:
               
chr5:17999270-17999766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 63
               

               
Conread position:
               
2-505
               

               
Cow position:
               
chr5:50723274-50722770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 229
               

               
Conread position:
               
2-505
               

               
Cow position:
               
chr5:61726183-61725690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 59
               

               
Conread position:
               
2-506
               

               
Cow position:
               
chr5:18574408-18573889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 163
               

               
Conread position:
               
2-507
               

               
Cow position:
               
chr5:58704-59206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 148
               

               
Conread position:
               
2-507
               

               
Cow position:
               
chr5:3582781-3582297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
16, 82
               

               
Conread position:
               
2-507
               

               
Cow position:
               
chr5:14550356-14550868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 227
               

               
Conread position:
               
2-507
               

               
Cow position:
               
chr5:21617681-21617173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 74
               

               
Conread position:
               
2-507
               

               
Cow position:
               
chr5:26467853-26467340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
2-507
               

               
Cow position:
               
chr5:31469365-31469865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 233
               

               
Conread position:
               
2-507
               

               
Cow position:
               
chr5:34505698-34506208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 119
               

               
Conread position:
               
2-507
               

               
Cow position:
               
chr5:35208489-35207979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 172
               

               
Conread position:
               
2-507
               

               
Cow position:
               
chr5:37255107-37255638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
17, 248
               

               
Conread position:
               
2-507
               

               
Cow position:
               
chr5:43858192-43858710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 159
               

               
Conread position:
               
2-507
               

               
Cow position:
               
chr5:47756998-47756486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 89
               

               
Conread position:
               
2-507
               

               
Cow position:
               
chr5:57934894-57935395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 66
               

               
Conread position:
               
2-507
               

               
Cow position:
               
chr5:61576773-61576258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 246
               

               
Conread position:
               
2-507
               

               
Cow position:
               
chr5:62107258-62107777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 233
               

               
Conread position:
               
2-507
               

               
Cow position:
               
chr5:63647251-63647749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 137
               

               
Conread position:
               
2-507
               

               
Cow position:
               
chr5:74643458-74643943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 67
               

               
Conread position:
               
2-510
               

               
Cow position:
               
chr5:39937342-39936818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 172
               

               
Conread position:
               
2-524
               

               
Cow position:
               
chr5:45845464-45845992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 74
               

               
Conread position:
               
2-524
               

               
Cow position:
               
chr5:47870828-47871350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 49
               

               
Conread position:
               
2-524
               

               
Cow position:
               
chr5:58519190-58519698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 32
               

               
Conread position:
               
2-530
               

               
Cow position:
               
chr5:60952888-60952358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 188
               

               
Conread position:
               
2-533
               

               
Cow position:
               
chr5:15479355-15478802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 63
               

               
Conread position:
               
2-533
               

               
Cow position:
               
chr5:52164947-52165487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 128
               

               
Conread position:
               
2-535
               

               
Cow position:
               
chr5:59081966-59082502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 246
               

               
Conread position:
               
3-167
               

               
Cow position:
               
chr5:56525485-56525650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
3-167
               

               
Cow position:
               
chr5:57447439-57447604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
3-229
               

               
Cow position:
               
chr5:44810012-44810239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
3-265
               

               
Cow position:
               
chr5:57101301-57101561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 73
               

               
Conread position:
               
3-289
               

               
Cow position:
               
chr5:30233135-30232843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
17, 126
               

               
Conread position:
               
3-291
               

               
Cow position:
               
chr5:7012624-7012910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
17, 117
               

               
Conread position:
               
3-295
               

               
Cow position:
               
chr5:20288033-20288329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 289
               

               
Conread position:
               
3-296
               

               
Cow position:
               
chr5:30247300-30247590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 134
               

               
Conread position:
               
3-312
               

               
Cow position:
               
chr5:59384461-59384773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
17, 171
               

               
Conread position:
               
3-436
               

               
Cow position:
               
chr5:35235462-35235921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 318
               

               
Conread position:
               
3-454
               

               
Cow position:
               
chr5:3772067-3771616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 68
               

               
Conread position:
               
3-457
               

               
Cow position:
               
chr5:72903015-72903457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 72
               

               
Conread position:
               
3-479
               

               
Cow position:
               
chr5:19278478-19278944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
17, 107
               

               
Conread position:
               
3-507
               

               
Cow position:
               
chr5:47316750-47317250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
4-306
               

               
Cow position:
               
chr5:57755810-57756108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
16, 63
               

               
Conread position:
               
4-307
               

               
Cow position:
               
chr5:49668707-49668400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
13, 30
               

               
Conread position:
               
4-330
               

               
Cow position:
               
chr5:14920702-14921035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
16, 58
               

               
Conread position:
               
4-376
               

               
Cow position:
               
chr5:12760896-12761265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
16, 88
               

               
Conread position:
               
4-431
               

               
Cow position:
               
chr5:51053424-51053855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 77
               

               
Conread position:
               
4-459
               

               
Cow position:
               
chr5:40109708-40109266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 72
               

               
Conread position:
               
4-459
               

               
Cow position:
               
chr5:53835945-53835480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 144
               

               
Conread position:
               
4-464
               

               
Cow position:
               
chr5:30253964-30253503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 63
               

               
Conread position:
               
4-474
               

               
Cow position:
               
chr5:32975334-32975801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 152
               

               
Conread position:
               
4-475
               

               
Cow position:
               
chr5:69338038-69337581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 47
               

               
Conread position:
               
4-505
               

               
Cow position:
               
chr5:54875469-54875957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 98
               

               
Conread position:
               
4-507
               

               
Cow position:
               
chr5:30276911-30276413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 80
               

               
Conread position:
               
4-508
               

               
Cow position:
               
chr5:44847803-44848294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 79
               

               
Conread position:
               
4-524
               

               
Cow position:
               
chr5:39447301-39447834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 235
               

               
Conread position:
               
5-267
               

               
Cow position:
               
chr5:50101155-50101415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
15, 71
               

               
Conread position:
               
5-432
               

               
Cow position:
               
chr5:4280667-4280255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 70
               

               
Conread position:
               
5-507
               

               
Cow position:
               
chr5:62172621-62172124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 31
               

               
Conread position:
               
6-201
               

               
Cow position:
               
chr5:49821653-49821456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
6-233
               

               
Cow position:
               
chr5:65760312-65760533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
14, 108
               

               
Conread position:
               
6-233
               

               
Cow position:
               
chr5:69383473-69383251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
14, 70
               

               
Conread position:
               
6-250
               

               
Cow position:
               
chr5:39036004-39035757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 104
               

               
Conread position:
               
6-290
               

               
Cow position:
               
chr5:20994867-20995156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
14, 30
               

               
Conread position:
               
6-381
               

               
Cow position:
               
chr5:35246885-35247265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 220
               

               
Conread position:
               
6-385
               

               
Cow position:
               
chr5:16214903-16214529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
8, 70
               

               
Conread position:
               
6-459
               

               
Cow position:
               
chr5:41165304-41164853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 70
               

               
Conread position:
               
6-498
               

               
Cow position:
               
chr5:44993817-44994310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 166
               

               
Conread position:
               
6-507
               

               
Cow position:
               
chr5:28330119-28330611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 229
               

               
Conread position:
               
6-507
               

               
Cow position:
               
chr5:29828270-29827771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 88
               

               
Conread position:
               
6-515
               

               
Cow position:
               
chr5:44796514-44797006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
6-524
               

               
Cow position:
               
chr5:30487449-30486952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 120
               

               
Conread position:
               
7-507
               

               
Cow position:
               
chr5:43922950-43923431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 53
               

               
Conread position:
               
7-524
               

               
Cow position:
               
chr5:65776156-65776691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 46
               

               
Conread position:
               
8-268
               

               
Cow position:
               
chr5:61784505-61784766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
15, 155
               

               
Conread position:
               
8-382
               

               
Cow position:
               
chr5:55956130-55955750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 75
               

               
Conread position:
               
8-464
               

               
Cow position:
               
chr5:67932246-67932701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 194
               

               
Conread position:
               
8-506
               

               
Cow position:
               
chr5:42845377-42845881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 27
               

               
Conread position:
               
10-453
               

               
Cow position:
               
chr5:56071076-56070624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 65
               

               
Conread position:
               
10-464
               

               
Cow position:
               
chr5:30845324-30844872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 65
               

               
Conread position:
               
11-317
               

               
Cow position:
               
chr5:53947116-53946807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
11-507
               

               
Cow position:
               
chr5:12149763-12149264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 98
               

               
Conread position:
               
12-464
               

               
Cow position:
               
chr5:29352918-29353369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 7
               

               
Conread position:
               
13-199
               

               
Cow position:
               
chr5:20812764-20812576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
7, 126
               

               
Conread position:
               
13-498
               

               
Cow position:
               
chr5:4506748-4507234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 207
               

               
Conread position:
               
18-162
               

               
Cow position:
               
chr5:19561237-19561381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
18-198
               

               
Cow position:
               
chr5:53980543-53980723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
18-213
               

               
Cow position:
               
chr5:44196721-44196913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
18-227
               

               
Cow position:
               
chr5:12300119-12299913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
78, 32
               

               
Conread position:
               
18-228
               

               
Cow position:
               
chr5:52138147-52137936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
156, 39
               

               
Conread position:
               
18-231
               

               
Cow position:
               
chr5:15364480-15364267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
75, 137
               

               
Conread position:
               
18-233
               

               
Cow position:
               
chr5:35513430-35513211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 15
               

               
Conread position:
               
18-234
               

               
Cow position:
               
chr5:16939383-16939599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
18-297
               

               
Cow position:
               
chr5:57994671-57994933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
18-298
               

               
Cow position:
               
chr5:41935446-41935725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
229, 127
               

               
Conread position:
               
18-298
               

               
Cow position:
               
chr5:72006288-72006561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
81, 19
               

               
Conread position:
               
18-305
               

               
Cow position:
               
chr5:34108848-34109135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
32, 42
               

               
Conread position:
               
18-309
               

               
Cow position:
               
chr5:48867261-48867542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
243, 71
               

               
Conread position:
               
18-313
               

               
Cow position:
               
chr5:17554826-17555115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
153, 64
               

               
Conread position:
               
18-313
               

               
Cow position:
               
chr5:66551683-66551983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
46, 60
               

               
Conread position:
               
18-317
               

               
Cow position:
               
chr5:57526718-57527006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
252, 109
               

               
Conread position:
               
18-324
               

               
Cow position:
               
chr5:31475893-31475589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
257, 217
               

               
Conread position:
               
18-337
               

               
Cow position:
               
chr5:60016373-60016055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
220, 69
               

               
Conread position:
               
18-340
               

               
Cow position:
               
chr5:59395873-59395546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
169, 217
               

               
Conread position:
               
18-359
               

               
Cow position:
               
chr5:18289327-18288995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
219, 57
               

               
Conread position:
               
18-371
               

               
Cow position:
               
chr5:61007273-61006936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
344, 14
               

               
Conread position:
               
18-372
               

               
Cow position:
               
chr5:54751017-54750687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
300, 60
               

               
Conread position:
               
18-382
               

               
Cow position:
               
chr5:12673271-12673620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
254, 57
               

               
Conread position:
               
18-414
               

               
Cow position:
               
chr5:69461541-69461144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 14
               

               
Conread position:
               
18-459
               

               
Cow position:
               
chr5:20128263-20127819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 227
               

               
Conread position:
               
18-460
               

               
Cow position:
               
chr5:17062870-17063330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 197
               

               
Conread position:
               
18-504
               

               
Cow position:
               
chr5:57328006-57327509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 50
               

               
Conread position:
               
18-507
               

               
Cow position:
               
chr5:14903857-14904338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 28
               

               
Conread position:
               
18-507
               

               
Cow position:
               
chr5:26097499-26097015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
301, 78
               

               
Conread position:
               
18-507
               

               
Cow position:
               
chr5:33414199-33414687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 140
               

               
Conread position:
               
18-507
               

               
Cow position:
               
chr5:55756204-55756723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 163
               

               
Conread position:
               
18-507
               

               
Cow position:
               
chr5:60209937-60210421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 61
               

               
Conread position:
               
18-528
               

               
Cow position:
               
chr5:35826807-35826293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 57
               

               
Conread position:
               
18-531
               

               
Cow position:
               
chr5:16893569-16894075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 57
               

               
Conread position:
               
19-328
               

               
Cow position:
               
chr5:64168029-64168336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
251, 145
               

               
Conread position:
               
19-329
               

               
Cow position:
               
chr5:64555739-64555426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
216, 228
               

               
Conread position:
               
19-341
               

               
Cow position:
               
chr5:63234615-63234941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 170
               

               
Conread position:
               
19-507
               

               
Cow position:
               
chr5:65753068-65752577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 72
               

               
Conread position:
               
20-269
               

               
Cow position:
               
chr5:49501611-49501864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
20-392
               

               
Cow position:
               
chr5:64697995-64697612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
61, 160
               

               
Conread position:
               
20-455
               

               
Cow position:
               
chr5:64137465-64137020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 349
               

               
Conread position:
               
20-505
               

               
Cow position:
               
chr5:23140381-23140858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
310, 30
               

               
Conread position:
               
20-507
               

               
Cow position:
               
chr5:3282044-3281549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 232
               

               
Conread position:
               
20-507
               

               
Cow position:
               
chr5:38853558-38853077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 220
               

               
Conread position:
               
20-507
               

               
Cow position:
               
chr5:45225613-45226111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 63
               

               
Conread position:
               
21-300
               

               
Cow position:
               
chr5:57419590-57419862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
21-436
               

               
Cow position:
               
chr5:6503670-6504092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 272
               

               
Conread position:
               
24-281
               

               
Cow position:
               
chr5:37895198-37894940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
212, 227
               

               
Conread position:
               
24-400
               

               
Cow position:
               
chr5:57265699-57266074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
210, 223
               

               
Conread position:
               
24-413
               

               
Cow position:
               
chr5:52040118-52040509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
249, 190
               

               
Conread position:
               
24-507
               

               
Cow position:
               
chr5:5938529-5938042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 206
               

               
Conread position:
               
24-524
               

               
Cow position:
               
chr5:53055356-53055852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 263
               

               
Conread position:
               
25-268
               

               
Cow position:
               
chr5:55795768-55796003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
99, 47
               

               
Conread position:
               
31-280
               

               
Cow position:
               
chr5:30419173-30418923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
194, 218
               

               
Conread position:
               
38-402
               

               
Cow position:
               
chr5:44028116-44028480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
38, 61
               

               
Conread position:
               
38-434
               

               
Cow position:
               
chr5:71495011-71494606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 28
               

               
Conread position:
               
40-524
               

               
Cow position:
               
chr5:28248362-28247877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 79
               

               
Conread position:
               
43-227
               

               
Cow position:
               
chr5:11289204-11289391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
44-506
               

               
Cow position:
               
chr5:26093981-26094450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 227
               

               
Conread position:
               
47-514
               

               
Cow position:
               
chr5:44752125-44752602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 232
               

               
Conread position:
               
53-458
               

               
Cow position:
               
chr5:42777923-42777530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
217, 37
               

               
Conread position:
               
56-457
               

               
Cow position:
               
chr5:37646377-37646785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 18
               

               
Conread position:
               
65-507
               

               
Cow position:
               
chr5:63964003-63964463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 37
               

               
Conread position:
               
66-361
               

               
Cow position:
               
chr5:14473240-14473551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
48, 293
               

               
Conread position:
               
67-290
               

               
Cow position:
               
chr5:45419975-45420195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
203, 169
               

               
Conread position:
               
67-299
               

               
Cow position:
               
chr5:41981530-41981300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
165, 103
               

               
Conread position:
               
67-313
               

               
Cow position:
               
chr5:59872916-59873175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
67-353
               

               
Cow position:
               
chr5:58490893-58490589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
67-357
               

               
Cow position:
               
chr5:54767747-54768042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
203, 136
               

               
Conread position:
               
67-467
               

               
Cow position:
               
chr5:43992488-43992082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 283
               

               
Conread position:
               
67-482
               

               
Cow position:
               
chr5:26476856-26477250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
164, 133
               

               
Conread position:
               
67-507
               

               
Cow position:
               
chr5:16205993-16206424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 126
               

               
Conread position:
               
67-533
               

               
Cow position:
               
chr5:53855868-53855396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 309
               

               
Conread position:
               
68-317
               

               
Cow position:
               
chr5:19524061-19523812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
202, 178
               

               
Conread position:
               
68-507
               

               
Cow position:
               
chr5:3204985-3204556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 14
               

               
Conread position:
               
68-507
               

               
Cow position:
               
chr5:33662007-33661572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 168
               

               
Conread position:
               
68-507
               

               
Cow position:
               
chr5:37189934-37190375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 176
               

               
Conread position:
               
69-455
               

               
Cow position:
               
chr5:7723825-7723441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
108, 100
               

               
Conread position:
               
70-457
               

               
Cow position:
               
chr5:4031827-4032222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 67
               

               
Conread position:
               
70-507
               

               
Cow position:
               
chr5:39299689-39299246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 194
               

               
Conread position:
               
70-507
               

               
Cow position:
               
chr5:50533227-50533663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 89
               

               
Conread position:
               
70-507
               

               
Cow position:
               
chr5:63987286-63987729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 96
               

               
Conread position:
               
71-524
               

               
Cow position:
               
chr5:5110911-5111376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 271
               

               
Conread position:
               
73-470
               

               
Cow position:
               
chr5:458644-458226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 79
               

               
Conread position:
               
73-470
               

               
Cow position:
               
chr5:75436733-75437143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 14
               

               
Conread position:
               
76-317
               

               
Cow position:
               
chr5:35126208-35125965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
154, 174
               

               
Conread position:
               
76-317
               

               
Cow position:
               
chr5:53710536-53710778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
194, 0
               

               
Conread position:
               
79-445
               

               
Cow position:
               
chr5:16025319-16025682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 17
               

               
Conread position:
               
83-417
               

               
Cow position:
               
chr5:50215418-50215752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
189, 31
               

               
Conread position:
               
84-436
               

               
Cow position:
               
chr5:68264813-68265176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
85-393
               

               
Cow position:
               
chr5:12866684-12866998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
186, 77
               

               
Conread position:
               
85-507
               

               
Cow position:
               
chr5:56524318-56523892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 209
               

               
Conread position:
               
85-524
               

               
Cow position:
               
chr5:72564908-72564460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 165
               

               
Conread position:
               
86-311
               

               
Cow position:
               
chr5:54375359-54375589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
125, 158
               

               
Conread position:
               
86-318
               

               
Cow position:
               
chr5:41294224-41293992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 103
               

               
Conread position:
               
86-339
               

               
Cow position:
               
chr5:38076340-38076597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
144, 231
               

               
Conread position:
               
86-385
               

               
Cow position:
               
chr5:30949772-30950078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
86-406
               

               
Cow position:
               
chr5:47323605-47323268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
183, 109
               

               
Conread position:
               
86-407
               

               
Cow position:
               
chr5:37808520-37808848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
151, 239
               

               
Conread position:
               
86-459
               

               
Cow position:
               
chr5:36855349-36854977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 92
               

               
Conread position:
               
86-460
               

               
Cow position:
               
chr5:54350218-54350597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 265
               

               
Conread position:
               
86-466
               

               
Cow position:
               
chr5:59325698-59326070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 106
               

               
Conread position:
               
86-479
               

               
Cow position:
               
chr5:49685134-49685535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
184, 27
               

               
Conread position:
               
86-507
               

               
Cow position:
               
chr5:54311479-54311041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 284
               

               
Conread position:
               
86-524
               

               
Cow position:
               
chr5:41545750-41546189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 166
               

               
Conread position:
               
87-437
               

               
Cow position:
               
chr5:57737241-57736901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
183, 140
               

               
Conread position:
               
88-356
               

               
Cow position:
               
chr5:63426864-63427137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
89, 81
               

               
Conread position:
               
88-507
               

               
Cow position:
               
chr5:34463439-34463871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 41
               

               
Conread position:
               
90-313
               

               
Cow position:
               
chr5:55019431-55019211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
91-313
               

               
Cow position:
               
chr5:23678565-23678786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
148, 36
               

               
Conread position:
               
91-343
               

               
Cow position:
               
chr5:58446945-58446685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
147, 137
               

               
Conread position:
               
91-383
               

               
Cow position:
               
chr5:47696312-47696599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
150, 66
               

               
Conread position:
               
91-391
               

               
Cow position:
               
chr5:54060414-54060108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
151, 83
               

               
Conread position:
               
91-434
               

               
Cow position:
               
chr5:18899111-18898773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
22, 18
               

               
Conread position:
               
91-503
               

               
Cow position:
               
chr5:27102656-27103070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
29, 41
               

               
Conread position:
               
91-507
               

               
Cow position:
               
chr5:9089890-9090302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 32
               

               
Conread position:
               
91-528
               

               
Cow position:
               
chr5:26990526-26990090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 34
               

               
Conread position:
               
92-317
               

               
Cow position:
               
chr5:13717434-13717655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
185, 10
               

               
Conread position:
               
92-357
               

               
Cow position:
               
chr5:45273365-45273633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
178, 20
               

               
Conread position:
               
93-400
               

               
Cow position:
               
chr5:51935325-51935006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
177, 59
               

               
Conread position:
               
93-442
               

               
Cow position:
               
chr5:62142812-62142452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 203
               

               
Conread position:
               
93-524
               

               
Cow position:
               
chr5:58856238-58855803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 65
               

               
Conread position:
               
94-476
               

               
Cow position:
               
chr5:52000353-51999967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 49
               

               
Conread position:
               
94-514
               

               
Cow position:
               
chr5:60715233-60715645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 84
               

               
Conread position:
               
98-445
               

               
Cow position:
               
chr5:15721943-15722275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
172, 116
               

               
Conread position:
               
98-492
               

               
Cow position:
               
chr5:63992041-63992431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 143
               

               
Conread position:
               
98-524
               

               
Cow position:
               
chr5:29903392-29903821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 133
               

               
Conread position:
               
98-524
               

               
Cow position:
               
chr5:50821914-50821489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 125
               

               
Conread position:
               
103-401
               

               
Cow position:
               
chr5:6286306-6286604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
10, 136
               

               
Conread position:
               
104-510
               

               
Cow position:
               
chr5:46509740-46510153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 248
               

               
Conread position:
               
105-376
               

               
Cow position:
               
chr5:61809562-61809838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
128, 179
               

               
Conread position:
               
105-492
               

               
Cow position:
               
chr5:65601580-65601196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 18
               

               
Conread position:
               
106-487
               

               
Cow position:
               
chr5:24300410-24300017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
12, 16
               

               
Conread position:
               
106-492
               

               
Cow position:
               
chr5:61544070-61543683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
178, 65
               

               
Conread position:
               
107-469
               

               
Cow position:
               
chr5:5714706-5715083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
107-511
               

               
Cow position:
               
chr5:4952874-4952470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
163, 111
               

               
Conread position:
               
109-453
               

               
Cow position:
               
chr5:32696703-32697042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 34
               

               
Conread position:
               
112-317
               

               
Cow position:
               
chr5:1087082-1087284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
163, 117
               

               
Conread position:
               
113-383
               

               
Cow position:
               
chr5:65883656-65883932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
65, 61
               

               
Conread position:
               
113-524
               

               
Cow position:
               
chr5:31481264-31480854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 172
               

               
Conread position:
               
118-451
               

               
Cow position:
               
chr5:31640536-31640200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 197
               

               
Conread position:
               
118-528
               

               
Cow position:
               
chr5:58793496-58793922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 230
               

               
Conread position:
               
120-507
               

               
Cow position:
               
chr5:39094659-39094271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 95
               

               
Conread position:
               
122-418
               

               
Cow position:
               
chr5:8162709-8163018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
15, 54
               

               
Conread position:
               
127-480
               

               
Cow position:
               
chr5:4617468-4617123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
52, 59
               

               
Conread position:
               
129-507
               

               
Cow position:
               
chr5:63104014-63103629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
141, 106
               

               
Conread position:
               
135-487
               

               
Cow position:
               
chr5:34050212-34049847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 113
               

               
Conread position:
               
137-460
               

               
Cow position:
               
chr5:34301004-34300689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 26
               

               
Conread position:
               
138-390
               

               
Cow position:
               
chr5:69520982-69520726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
95, 121
               

               
Conread position:
               
138-453
               

               
Cow position:
               
chr5:46122262-46122578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
139, 80
               

               
Conread position:
               
140-451
               

               
Cow position:
               
chr5:56820175-56820487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 17
               

               
Conread position:
               
143-382
               

               
Cow position:
               
chr5:67540115-67540359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 30
               

               
Conread position:
               
143-507
               

               
Cow position:
               
chr5:41951010-41951363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 70
               

               
Conread position:
               
144-332
               

               
Cow position:
               
chr5:56635980-56635793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
34, 29
               

               
Conread position:
               
144-507
               

               
Cow position:
               
chr5:31144702-31145064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
80, 225
               

               
Conread position:
               
144-507
               

               
Cow position:
               
chr5:45170444-45170079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 70
               

               
Conread position:
               
146-508
               

               
Cow position:
               
chr5:47313556-47313190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 53
               

               
Conread position:
               
149-524
               

               
Cow position:
               
chr5:32140628-32140996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 136
               

               
Conread position:
               
151-453
               

               
Cow position:
               
chr5:28926102-28926414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
151-524
               

               
Cow position:
               
chr5:13691489-13691874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 324
               

               
Conread position:
               
166-401
               

               
Cow position:
               
chr5:28957551-28957794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
65, 105
               

               
Conread position:
               
176-433
               

               
Cow position:
               
chr5:29212997-29212739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
48, 37
               

               
Conread position:
               
176-451
               

               
Cow position:
               
chr5:1766296-1766572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 54
               

               
Conread position:
               
176-455
               

               
Cow position:
               
chr5:12709942-12709655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 192
               

               
Conread position:
               
176-507
               

               
Cow position:
               
chr5:54713678-54714024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 60
               

               
Conread position:
               
176-514
               

               
Cow position:
               
chr5:32378899-32378582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
211, 62
               

               
Conread position:
               
180-482
               

               
Cow position:
               
chr5:1779236-1779519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
129, 17
               

               
Conread position:
               
180-507
               

               
Cow position:
               
chr5:26790406-26790726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 65
               

               
Conread position:
               
181-507
               

               
Cow position:
               
chr5:3280824-3281150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
61, 49
               

               
Conread position:
               
181-507
               

               
Cow position:
               
chr5:28927539-28927879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 8
               

               
Conread position:
               
187-507
               

               
Cow position:
               
chr5:23856118-23856445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 17
               

               
Conread position:
               
189-367
               

               
Cow position:
               
chr5:50972570-50972386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
44, 52
               

               
Conread position:
               
189-451
               

               
Cow position:
               
chr5:51490724-51490981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
81, 36
               

               
Conread position:
               
189-524
               

               
Cow position:
               
chr5:16185128-16184793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 171
               

               
Conread position:
               
190-371
               

               
Cow position:
               
chr5:76119593-76119412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
80, 141
               

               
Conread position:
               
190-374
               

               
Cow position:
               
chr5:51800933-51801117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
80, 39
               

               
Conread position:
               
190-382
               

               
Cow position:
               
chr5:71579215-71579018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
80, 176
               

               
Conread position:
               
190-385
               

               
Cow position:
               
chr5:29979943-29980144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
190-402
               

               
Cow position:
               
chr5:3668937-3668719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
49, 75
               

               
Conread position:
               
190-437
               

               
Cow position:
               
chr5:40039729-40039984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
45, 157
               

               
Conread position:
               
190-456
               

               
Cow position:
               
chr5:21964328-21964059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
44, 49
               

               
Conread position:
               
190-457
               

               
Cow position:
               
chr5:2500140-2500414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
49, 182
               

               
Conread position:
               
190-460
               

               
Cow position:
               
chr5:71505167-71504892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
44, 175
               

               
Conread position:
               
190-464
               

               
Cow position:
               
chr5:58144562-58144846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 58
               

               
Conread position:
               
190-506
               

               
Cow position:
               
chr5:27403190-27403521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 291
               

               
Conread position:
               
190-506
               

               
Cow position:
               
chr5:56443314-56443000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
48, 74
               

               
Conread position:
               
190-507
               

               
Cow position:
               
chr5:7921365-7921664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
87, 34
               

               
Conread position:
               
190-507
               

               
Cow position:
               
chr5:21944437-21944099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 293
               

               
Conread position:
               
190-507
               

               
Cow position:
               
chr5:47888672-47888997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 56
               

               
Conread position:
               
190-507
               

               
Cow position:
               
chr5:54404850-54405176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 160
               

               
Conread position:
               
190-524
               

               
Cow position:
               
chr5:42667348-42667691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 84
               

               
Conread position:
               
191-409
               

               
Cow position:
               
chr5:17644616-17644841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
79, 173
               

               
Conread position:
               
192-459
               

               
Cow position:
               
chr5:34885126-34885391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
127, 26
               

               
Conread position:
               
192-507
               

               
Cow position:
               
chr5:16509137-16508814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 207
               

               
Conread position:
               
194-440
               

               
Cow position:
               
chr5:49361957-49362207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
99, 36
               

               
Conread position:
               
194-507
               

               
Cow position:
               
chr5:59759413-59759110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
31, 53
               

               
Conread position:
               
194-507
               

               
Cow position:
               
chr5:62826717-62827037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 170
               

               
Conread position:
               
197-460
               

               
Cow position:
               
chr5:42744818-42744561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
41, 33
               

               
Conread position:
               
197-476
               

               
Cow position:
               
chr5:30638831-30639102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
119, 33
               

               
Conread position:
               
197-507
               

               
Cow position:
               
chr5:6130386-6130074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
73, 169
               

               
Conread position:
               
197-526
               

               
Cow position:
               
chr5:41522769-41523091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 74
               

               
Conread position:
               
198-507
               

               
Cow position:
               
chr5:59443217-59443533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 82
               

               
Conread position:
               
203-418
               

               
Cow position:
               
chr5:1678418-1678204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
31, 42
               

               
Conread position:
               
203-445
               

               
Cow position:
               
chr5:740913-741170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
40, 57
               

               
Conread position:
               
204-470
               

               
Cow position:
               
chr5:34115678-34115416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
20, 14
               

               
Conread position:
               
204-507
               

               
Cow position:
               
chr5:50950579-50950271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 19
               

               
Conread position:
               
205-400
               

               
Cow position:
               
chr5:53145859-53146063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
210-457
               

               
Cow position:
               
chr5:45037039-45036787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 14
               

               
Conread position:
               
211-466
               

               
Cow position:
               
chr5:62870023-62870277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 64
               

               
Conread position:
               
211-492
               

               
Cow position:
               
chr5:42677252-42676970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 95
               

               
Conread position:
               
213-469
               

               
Cow position:
               
chr5:50900915-50900663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
64, 27
               

               
Conread position:
               
216-444
               

               
Cow position:
               
chr5:72891744-72891971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
56, 29
               

               
Conread position:
               
217-405
               

               
Cow position:
               
chr5:39242187-39242371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
99, 19
               

               
Conread position:
               
218-464
               

               
Cow position:
               
chr5:32956087-32956330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
61, 20
               

               
Conread position:
               
221-468
               

               
Cow position:
               
chr5:18090733-18090483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
49, 141
               

               
Conread position:
               
222-507
               

               
Cow position:
               
chr5:42748165-42747880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
43, 126
               

               
Conread position:
               
223-507
               

               
Cow position:
               
chr5:55176897-55176610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 217
               

               
Conread position:
               
224-503
               

               
Cow position:
               
chr5:68081973-68082238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
161, 23
               

               
Conread position:
               
224-507
               

               
Cow position:
               
chr5:26377664-26377946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 35
               

               
Conread position:
               
225-455
               

               
Cow position:
               
chr5:40387867-40388097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
14, 123
               

               
Conread position:
               
225-460
               

               
Cow position:
               
chr5:40356862-40357107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
52, 13
               

               
Conread position:
               
229-507
               

               
Cow position:
               
chr5:30816720-30816433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 107
               

               
Conread position:
               
229-507
               

               
Cow position:
               
chr5:64844127-64844399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 29
               

               
Conread position:
               
229-533
               

               
Cow position:
               
chr5:31020139-31020420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
87, 8
               

               
Conread position:
               
232-367
               

               
Cow position:
               
chr5:19294491-19294626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
45, 104
               

               
Conread position:
               
237-459
               

               
Cow position:
               
chr5:56433797-56433566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
35, 202
               

               
Conread position:
               
237-481
               

               
Cow position:
               
chr5:32963638-32963885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 127
               

               
Conread position:
               
237-506
               

               
Cow position:
               
chr5:65932935-65933209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 166
               

               
Conread position:
               
237-507
               

               
Cow position:
               
chr5:41229699-41229430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
59, 28
               

               
Conread position:
               
240-433
               

               
Cow position:
               
chr5:6575601-6575797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
76, 32
               

               
Conread position:
               
240-441
               

               
Cow position:
               
chr5:57271275-57271483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
39, 99
               

               
Conread position:
               
241-507
               

               
Cow position:
               
chr5:60520151-60519893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 105
               

               
Conread position:
               
245-507
               

               
Cow position:
               
chr5:56467685-56467422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
32, 90
               

               
Conread position:
               
251-393
               

               
Cow position:
               
chr5:61875205-61875347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 66
               

               
Conread position:
               
255-506
               

               
Cow position:
               
chr5:46611125-46611365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
60, 25
               

               
Conread position:
               
257-524
               

               
Cow position:
               
chr5:46103967-46104239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
20, 86
               

               
Conread position:
               
258-468
               

               
Cow position:
               
chr5:48178705-48178920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
55, 119
               

               
Conread position:
               
259-479
               

               
Cow position:
               
chr5:37366872-37366639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
259-503
               

               
Cow position:
               
chr5:63917440-63917685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
60, 91
               

               
Conread position:
               
260-507
               

               
Cow position:
               
chr5:44054065-44054317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 75
               

               
Conread position:
               
262-398
               

               
Cow position:
               
chr5:45025950-45026092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 103
               

               
Conread position:
               
269-507
               

               
Cow position:
               
chr5:15462676-15462443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
8, 100
               

               
Conread position:
               
270-476
               

               
Cow position:
               
chr5:62261825-62261624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
47, 97
               

               
Conread position:
               
271-460
               

               
Cow position:
               
chr5:25225693-25225885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
25, 43
               

               
Conread position:
               
277-460
               

               
Cow position:
               
chr5:33537841-33537658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
11, 85
               
Show alignments to all cow chromosomes.