Cow genome map
| Conread name: | recc2804c_n16.y1 |
| Conread position: | 2-237 |
| Cow position: | chr11:34641973-34642213 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 23, 53 |
| Conread position: | 44-236 |
| Cow position: | chr11:42519947-42519755 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 59, 97 |
| Conread position: | 54-237 |
| Cow position: | chr11:46705334-46705521 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 55-237 |
| Cow position: | chr11:84795547-84795729 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 5, 73 |
| Conread position: | 60-237 |
| Cow position: | chr11:52832528-52832701 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 8, 41 |
| Conread position: | 60-237 |
| Cow position: | chr11:53262955-53262786 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 62-235 |
| Cow position: | chr11:37372507-37372333 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 65, 112 |
| Conread position: | 64-235 |
| Cow position: | chr11:34136694-34136524 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 66, 12 |
| Conread position: | 69-222 |
| Cow position: | chr11:15155150-15155305 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 7, 109 |
| Conread position: | 72-223 |
| Cow position: | chr11:24967625-24967476 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 90, 82 |
| Conread position: | 73-242 |
| Cow position: | chr11:13038999-13039161 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 44 |
| Conread position: | 74-238 |
| Cow position: | chr11:60985097-60985258 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 23, 55 |
| Conread position: | 77-225 |
| Cow position: | chr11:1694880-1694734 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 77-239 |
| Cow position: | chr11:45890143-45889977 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 13, 105 |
| Conread position: | 77-239 |
| Cow position: | chr11:53452167-53452331 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 16, 103 |
| Conread position: | 78-237 |
| Cow position: | chr11:372962-373124 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 22, 101 |
| Conread position: | 78-237 |
| Cow position: | chr11:40275419-40275581 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 22, 101 |
| Conread position: | 78-237 |
| Cow position: | chr11:40278911-40279073 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 22, 101 |
| Conread position: | 78-239 |
| Cow position: | chr11:6729848-6729686 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 82-234 |
| Cow position: | chr11:17892075-17891930 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 82-234 |
| Cow position: | chr11:47193693-47193537 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 15, 98 |
| Conread position: | 82-236 |
| Cow position: | chr11:696176-696327 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 48, 11 |
| Conread position: | 82-236 |
| Cow position: | chr11:76391849-76392001 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 9, 45 |
| Conread position: | 82-240 |
| Cow position: | chr11:9874490-9874333 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 9, 93 |
| Conread position: | 83-225 |
| Cow position: | chr11:76851663-76851805 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 46, 12 |
| Conread position: | 84-235 |
| Cow position: | chr11:3783709-3783561 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 84-236 |
| Cow position: | chr11:51745518-51745370 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 17, 45 |
| Conread position: | 84-237 |
| Cow position: | chr11:67236574-67236418 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 31 |
| Conread position: | 85-235 |
| Cow position: | chr11:7332939-7333089 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 45, 88 |
| Conread position: | 86-237 |
| Cow position: | chr11:23047591-23047744 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 15, 89 |
| Conread position: | 87-232 |
| Cow position: | chr11:53141544-53141689 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 87-238 |
| Cow position: | chr11:62215019-62215173 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 14, 95 |
| Conread position: | 88-236 |
| Cow position: | chr11:66401855-66401711 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 77, 28 |
| Conread position: | 89-229 |
| Cow position: | chr11:43643920-43644058 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 72, 85 |
| Conread position: | 89-237 |
| Cow position: | chr11:5188294-5188149 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 39, 6 |
| Conread position: | 89-237 |
| Cow position: | chr11:27681669-27681521 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 11 |
| Conread position: | 92-223 |
| Cow position: | chr11:51389389-51389515 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 92-235 |
| Cow position: | chr11:65988387-65988246 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 69, 34 |
| Conread position: | 95-216 |
| Cow position: | chr11:42062309-42062431 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 35, 79 |
| Conread position: | 95-224 |
| Cow position: | chr11:48983278-48983147 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 14, 88 |
| Conread position: | 95-231 |
| Cow position: | chr11:7001766-7001902 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 35, 81 |
| Conread position: | 95-233 |
| Cow position: | chr11:50953400-50953539 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 35, 85 |
| Conread position: | 95-234 |
| Cow position: | chr11:67941065-67940926 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 81 |
| Conread position: | 95-235 |
| Cow position: | chr11:13306660-13306801 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 34, 84 |
| Conread position: | 95-235 |
| Cow position: | chr11:46700172-46700033 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 35, 78 |
| Conread position: | 95-237 |
| Cow position: | chr11:8828469-8828612 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 33, 82 |
| Conread position: | 95-237 |
| Cow position: | chr11:17151834-17151691 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 35, 80 |
| Conread position: | 95-237 |
| Cow position: | chr11:17452398-17452253 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 10, 82 |
| Conread position: | 95-237 |
| Cow position: | chr11:53445933-53445794 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 95-240 |
| Cow position: | chr11:38667666-38667808 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 29 |
| Conread position: | 96-237 |
| Cow position: | chr11:34945909-34946051 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 85 |
| Conread position: | 98-236 |
| Cow position: | chr11:21136974-21136835 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 29, 76 |
| Conread position: | 99-235 |
| Cow position: | chr11:13121859-13121993 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 99-236 |
| Cow position: | chr11:54058150-54058012 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 32, 78 |
| Conread position: | 99-237 |
| Cow position: | chr11:16001085-16000945 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 99-237 |
| Cow position: | chr11:47565779-47565917 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 99-237 |
| Cow position: | chr11:75255559-75255425 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 101-223 |
| Cow position: | chr11:70399997-70399874 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 29, 80 |
| Conread position: | 103-236 |
| Cow position: | chr11:31894427-31894293 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 24, 76 |
| Conread position: | 116-234 |
| Cow position: | chr11:76007521-76007403 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 14, 65 |
Show alignments to all cow chromosomes.