Cow genome map
| Conread name: | recc2804c_n16.y1 |
| Conread position: | 59-237 |
| Cow position: | chr13:16327445-16327617 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 73-237 |
| Cow position: | chr13:15091122-15090963 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 73-237 |
| Cow position: | chr13:32718080-32717917 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 57, 22 |
| Conread position: | 73-237 |
| Cow position: | chr13:55592251-55592089 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 9 |
| Conread position: | 73-237 |
| Cow position: | chr13:55618332-55618170 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 21, 9 |
| Conread position: | 75-237 |
| Cow position: | chr13:34191931-34191767 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 14, 105 |
| Conread position: | 76-235 |
| Cow position: | chr13:11768259-11768098 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 100 |
| Conread position: | 77-236 |
| Cow position: | chr13:50738959-50739115 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 84, 18 |
| Conread position: | 77-239 |
| Cow position: | chr13:58614971-58615137 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 24, 103 |
| Conread position: | 78-234 |
| Cow position: | chr13:32773151-32773298 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 81-235 |
| Cow position: | chr13:9501796-9501642 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 95 |
| Conread position: | 81-237 |
| Cow position: | chr13:17991449-17991606 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 49, 96 |
| Conread position: | 81-237 |
| Cow position: | chr13:29820414-29820259 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 48, 14 |
| Conread position: | 81-237 |
| Cow position: | chr13:54094601-54094758 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 49, 14 |
| Conread position: | 82-236 |
| Cow position: | chr13:14717546-14717393 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 26, 11 |
| Conread position: | 82-237 |
| Cow position: | chr13:17796159-17796315 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 63, 94 |
| Conread position: | 82-237 |
| Cow position: | chr13:62267434-62267276 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 25, 100 |
| Conread position: | 83-226 |
| Cow position: | chr13:34761473-34761617 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 96 |
| Conread position: | 83-235 |
| Cow position: | chr13:12745465-12745617 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 47, 37 |
| Conread position: | 83-237 |
| Cow position: | chr13:34689724-34689879 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 42, 95 |
| Conread position: | 84-231 |
| Cow position: | chr13:21725938-21726088 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 33, 101 |
| Conread position: | 84-234 |
| Cow position: | chr13:25206912-25207058 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 81, 42 |
| Conread position: | 84-235 |
| Cow position: | chr13:26507732-26507880 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 81, 11 |
| Conread position: | 84-236 |
| Cow position: | chr13:30271118-30271269 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 84-237 |
| Cow position: | chr13:1958802-1958955 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 16 |
| Conread position: | 84-237 |
| Cow position: | chr13:9802862-9803015 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 89 |
| Conread position: | 84-237 |
| Cow position: | chr13:14220292-14220441 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 77, 90 |
| Conread position: | 84-237 |
| Cow position: | chr13:18550799-18550952 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 45, 15 |
| Conread position: | 84-237 |
| Cow position: | chr13:33281804-33281953 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 84-237 |
| Cow position: | chr13:37435113-37435265 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 58 |
| Conread position: | 84-237 |
| Cow position: | chr13:47188237-47188384 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 86-237 |
| Cow position: | chr13:20156282-20156434 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 43, 91 |
| Conread position: | 87-217 |
| Cow position: | chr13:6330220-6330089 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 90 |
| Conread position: | 87-238 |
| Cow position: | chr13:18665535-18665688 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 43, 90 |
| Conread position: | 88-237 |
| Cow position: | chr13:12521980-12521831 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 42, 7 |
| Conread position: | 88-237 |
| Cow position: | chr13:22075468-22075618 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 41, 89 |
| Conread position: | 91-225 |
| Cow position: | chr13:47017380-47017511 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 10, 26 |
| Conread position: | 92-236 |
| Cow position: | chr13:9125473-9125616 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 95-226 |
| Cow position: | chr13:29666833-29666701 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 75 |
| Conread position: | 95-233 |
| Cow position: | chr13:25824324-25824460 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 70, 79 |
| Conread position: | 95-235 |
| Cow position: | chr13:22887185-22887044 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 82 |
| Conread position: | 95-236 |
| Cow position: | chr13:53858257-53858115 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 35, 84 |
| Conread position: | 95-237 |
| Cow position: | chr13:661832-661693 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 35, 82 |
| Conread position: | 95-237 |
| Cow position: | chr13:22784039-22783901 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 72, 31 |
| Conread position: | 95-237 |
| Cow position: | chr13:46430489-46430357 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 95-239 |
| Cow position: | chr13:20180220-20180363 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 96-222 |
| Cow position: | chr13:46304192-46304066 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 99-236 |
| Cow position: | chr13:43167223-43167085 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 77 |
| Conread position: | 99-236 |
| Cow position: | chr13:54815105-54814965 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 79 |
| Conread position: | 99-237 |
| Cow position: | chr13:6927115-6927250 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 41 |
| Conread position: | 99-239 |
| Cow position: | chr13:32167502-32167362 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 18, 6 |
| Conread position: | 100-223 |
| Cow position: | chr13:33346948-33347069 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 65, 26 |
| Conread position: | 101-239 |
| Cow position: | chr13:32904590-32904728 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 29, 47 |
| Conread position: | 103-237 |
| Cow position: | chr13:46284795-46284661 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 75 |
| Conread position: | 105-239 |
| Cow position: | chr13:17346626-17346760 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 105, 58 |
| Conread position: | 107-235 |
| Cow position: | chr13:58347902-58348030 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 69 |
| Conread position: | 107-237 |
| Cow position: | chr13:13296240-13296113 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 70 |
| Conread position: | 116-237 |
| Cow position: | chr13:25057982-25058102 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 49, 59 |
| Conread position: | 119-237 |
| Cow position: | chr13:11834646-11834531 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 73, 5 |
| Conread position: | 127-237 |
| Cow position: | chr13:26508322-26508431 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 38, 48 |
Show alignments to all cow chromosomes.