Cow genome map

Conread name: recc2818c_g16.y1

Conread position: 1-667
Cow position:
Alignm length: 667
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-667
Cow position:
Alignm length: 674
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 15

Conread position: 1-667
Cow position:
Alignm length: 670
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 17

Conread position: 3-326
Cow position:
Alignm length: 327
Alignm identity: 216
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 12, 25

Conread position: 3-667
Cow position:
Alignm length: 669
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 164

Conread position: 8-338
Cow position:
Alignm length: 334
Alignm identity: 213
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 163, 15

Conread position: 9-637
Cow position:
Alignm length: 635
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 17

Conread position: 9-653
Cow position:
Alignm length: 651
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 17

Conread position: 9-667
Cow position:
Alignm length: 663
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 13

Conread position: 11-507
Cow position:
Alignm length: 500
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 5

Conread position: 11-665
Cow position:
Alignm length: 659
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 17

Conread position: 11-667
Cow position:
Alignm length: 659
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 5

Conread position: 11-667
Cow position:
Alignm length: 662
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 17

Conread position: 12-337
Cow position:
Alignm length: 337
Alignm identity: 212
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 169, 160

Conread position: 12-482
Cow position:
Alignm length: 474
Alignm identity: 285
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 69, 81

Conread position: 12-585
Cow position:
Alignm length: 576
Alignm identity: 341
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 323, 334

Conread position: 12-639
Cow position:
Alignm length: 628
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 374, 0

Conread position: 12-667
Cow position:
Alignm length: 658
Alignm identity: 384
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 352, 341

Conread position: 12-667
Cow position:
Alignm length: 659
Alignm identity: 399
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 329, 334

Conread position: 12-667
Cow position:
Alignm length: 656
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-667
Cow position:
Alignm length: 660
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 13

Conread position: 12-667
Cow position:
Alignm length: 660
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 168

Conread position: 14-662
Cow position:
Alignm length: 655
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 85

Conread position: 14-665
Cow position:
Alignm length: 659
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 8

Conread position: 14-666
Cow position:
Alignm length: 660
Alignm identity: 400
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 246, 59

Conread position: 15-578
Cow position:
Alignm length: 566
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 88

Conread position: 15-665
Cow position:
Alignm length: 655
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 425, 415

Conread position: 15-667
Cow position:
Alignm length: 655
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 252

Conread position: 16-426
Cow position:
Alignm length: 412
Alignm identity: 247
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 146, 166

Conread position: 16-667
Cow position:
Alignm length: 657
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 6

Conread position: 18-667
Cow position:
Alignm length: 650
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 21-667
Cow position:
Alignm length: 648
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 415, 393

Conread position: 22-667
Cow position:
Alignm length: 652
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 71

Conread position: 23-632
Cow position:
Alignm length: 613
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 242

Conread position: 23-667
Cow position:
Alignm length: 648
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 61

Conread position: 23-667
Cow position:
Alignm length: 646
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 328, 341

Conread position: 24-469
Cow position:
Alignm length: 448
Alignm identity: 284
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 184, 174

Conread position: 26-358
Cow position:
Alignm length: 334
Alignm identity: 207
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 250, 242

Conread position: 26-429
Cow position:
Alignm length: 409
Alignm identity: 256
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 73, 68

Conread position: 26-505
Cow position:
Alignm length: 482
Alignm identity: 282
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 399, 422

Conread position: 26-592
Cow position:
Alignm length: 570
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 66

Conread position: 26-667
Cow position:
Alignm length: 644
Alignm identity: 382
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 307, 318

Conread position: 26-667
Cow position:
Alignm length: 645
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 18

Conread position: 26-667
Cow position:
Alignm length: 645
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 63

Conread position: 26-667
Cow position:
Alignm length: 646
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 66

Conread position: 26-667
Cow position:
Alignm length: 644
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 83

Conread position: 27-331
Cow position:
Alignm length: 306
Alignm identity: 190
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 230, 238

Conread position: 27-397
Cow position:
Alignm length: 371
Alignm identity: 238
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 27-501
Cow position:
Alignm length: 478
Alignm identity: 297
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 154, 145

Conread position: 27-508
Cow position:
Alignm length: 486
Alignm identity: 308
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 49, 65

Conread position: 27-580
Cow position:
Alignm length: 558
Alignm identity: 325
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 314, 319

Conread position: 27-583
Cow position:
Alignm length: 561
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 68

Conread position: 27-638
Cow position:
Alignm length: 613
Alignm identity: 363
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 342, 349

Conread position: 27-641
Cow position:
Alignm length: 619
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 401, 414

Conread position: 27-646
Cow position:
Alignm length: 625
Alignm identity: 374
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 76, 68

Conread position: 27-656
Cow position:
Alignm length: 631
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 337

Conread position: 27-661
Cow position:
Alignm length: 637
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 327

Conread position: 27-663
Cow position:
Alignm length: 640
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 72

Conread position: 27-667
Cow position:
Alignm length: 646
Alignm identity: 379
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 314, 319

Conread position: 27-667
Cow position:
Alignm length: 643
Alignm identity: 378
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 326, 334

Conread position: 27-667
Cow position:
Alignm length: 646
Alignm identity: 387
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 314, 319

Conread position: 27-667
Cow position:
Alignm length: 654
Alignm identity: 388
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 314, 50

Conread position: 27-667
Cow position:
Alignm length: 644
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 244

Conread position: 27-667
Cow position:
Alignm length: 643
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 570, 563

Conread position: 27-667
Cow position:
Alignm length: 641
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 27-667
Cow position:
Alignm length: 642
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 561, 573

Conread position: 27-667
Cow position:
Alignm length: 645
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 71

Conread position: 27-667
Cow position:
Alignm length: 645
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 408, 391

Conread position: 27-667
Cow position:
Alignm length: 647
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 72

Conread position: 27-667
Cow position:
Alignm length: 645
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 82

Conread position: 27-667
Cow position:
Alignm length: 644
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 32

Conread position: 27-667
Cow position:
Alignm length: 643
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 411, 417

Conread position: 27-667
Cow position:
Alignm length: 643
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 148

Conread position: 27-667
Cow position:
Alignm length: 642
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 558, 574

Conread position: 27-667
Cow position:
Alignm length: 646
Alignm identity: 382
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 164, 146

Conread position: 27-667
Cow position:
Alignm length: 645
Alignm identity: 387
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 159, 147

Conread position: 28-509
Cow position:
Alignm length: 493
Alignm identity: 297
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 251, 233

Conread position: 28-667
Cow position:
Alignm length: 642
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 144

Conread position: 33-502
Cow position:
Alignm length: 474
Alignm identity: 299
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 398, 408

Conread position: 36-667
Cow position:
Alignm length: 636
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 85

Conread position: 37-585
Cow position:
Alignm length: 551
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 52

Conread position: 39-505
Cow position:
Alignm length: 471
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 128

Conread position: 39-667
Cow position:
Alignm length: 634
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 46

Conread position: 39-667
Cow position:
Alignm length: 635
Alignm identity: 369
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 140, 146

Conread position: 39-667
Cow position:
Alignm length: 632
Alignm identity: 379
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 378, 382

Conread position: 42-667
Cow position:
Alignm length: 628
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 115

Conread position: 44-663
Cow position:
Alignm length: 625
Alignm identity: 380
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 296, 136

Conread position: 44-667
Cow position:
Alignm length: 626
Alignm identity: 373
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 297, 302

Conread position: 47-667
Cow position:
Alignm length: 626
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 38

Conread position: 69-667
Cow position:
Alignm length: 600
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 198

Conread position: 105-667
Cow position:
Alignm length: 567
Alignm identity: 347
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 103, 7

Conread position: 109-664
Cow position:
Alignm length: 557
Alignm identity: 324
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 148, 160

Conread position: 109-664
Cow position:
Alignm length: 559
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 63

Conread position: 111-661
Cow position:
Alignm length: 552
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 409, 421

Conread position: 111-664
Cow position:
Alignm length: 556
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 101

Conread position: 117-663
Cow position:
Alignm length: 548
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 52

Conread position: 126-667
Cow position:
Alignm length: 546
Alignm identity: 325
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 64, 79

Conread position: 135-556
Cow position:
Alignm length: 424
Alignm identity: 258
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 117, 130

Conread position: 156-665
Cow position:
Alignm length: 511
Alignm identity: 296
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 185, 190

Conread position: 186-667
Cow position:
Alignm length: 482
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 186-667
Cow position:
Alignm length: 485
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 79

Conread position: 194-642
Cow position:
Alignm length: 452
Alignm identity: 287
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 63, 71

Conread position: 197-667
Cow position:
Alignm length: 472
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 9

Conread position: 203-667
Cow position:
Alignm length: 469
Alignm identity: 291
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 82, 55

Conread position: 206-667
Cow position:
Alignm length: 463
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 389, 395

Conread position: 208-394
Cow position:
Alignm length: 187
Alignm identity: 128
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 172, 0

Conread position: 210-667
Cow position:
Alignm length: 462
Alignm identity: 272
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 131, 154

Conread position: 246-665
Cow position:
Alignm length: 421
Alignm identity: 249
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 360, 370

Conread position: 265-667
Cow position:
Alignm length: 404
Alignm identity: 258
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 8, 23

Conread position: 275-506
Cow position:
Alignm length: 234
Alignm identity: 154
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 11, 151

Conread position: 295-646
Cow position:
Alignm length: 352
Alignm identity: 226
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 365-667
Cow position:
Alignm length: 303
Alignm identity: 194
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 379-667
Cow position:
Alignm length: 291
Alignm identity: 190
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 56, 51

Conread position: 447-667
Cow position:
Alignm length: 222
Alignm identity: 146
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 154, 114

Conread position: 457-667
Cow position:
Alignm length: 212
Alignm identity: 140
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 130, 144

Show alignments to all cow chromosomes.