Cow genome map

Conread name: recc2818c_g16.y1

Conread position: 1-392
Cow position: chr22:11641064-11641455 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 254
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 102, 94

Conread position: 1-637
Cow position: chr22:12385546-12384908 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 174

Conread position: 1-667
Cow position: chr22:12458652-12457988 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 586, 19

Conread position: 1-667
Cow position: chr22:12476011-12475349 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 14

Conread position: 8-309
Cow position: chr22:12475588-12475287 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 208
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 153, 159

Conread position: 8-309
Cow position: chr22:12499671-12499972 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 199
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 82, 95

Conread position: 8-584
Cow position: chr22:11640819-11641395 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 499, 513

Conread position: 8-584
Cow position: chr22:12399379-12398803 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 164

Conread position: 9-477
Cow position: chr22:12475755-12475287 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 236

Conread position: 9-639
Cow position: chr22:12458394-12457764 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 347, 335

Conread position: 12-317
Cow position: chr22:12418810-12418505 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 200
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 12-473
Cow position: chr22:12458223-12457762 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 87

Conread position: 12-524
Cow position: chr22:12431103-12430591 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 160

Conread position: 12-585
Cow position: chr22:14468108-14468680 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 354
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 150, 165

Conread position: 12-652
Cow position: chr22:14441925-14442565 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 382
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 82, 100

Conread position: 12-667
Cow position: chr22:12399627-12398972 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 324, 334

Conread position: 12-667
Cow position: chr22:12476088-12475433 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 435, 419

Conread position: 12-667
Cow position: chr22:12476340-12475685 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 166

Conread position: 12-667
Cow position: chr22:12498919-12499574 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 166

Conread position: 13-667
Cow position: chr22:12399542-12398888 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 588, 582

Conread position: 13-667
Cow position: chr22:12458558-12457904 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 590, 586

Conread position: 16-505
Cow position: chr22:12418974-12418485 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 422, 415

Conread position: 16-508
Cow position: chr22:11640912-11641403 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 11

Conread position: 16-663
Cow position: chr22:12431267-12430620 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 153

Conread position: 16-667
Cow position: chr22:12431519-12430868 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 581, 589

Conread position: 16-667
Cow position: chr22:12432107-12431456 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 252

Conread position: 17-639
Cow position: chr22:46654068-46654689 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 9

Conread position: 21-221
Cow position: chr22:12398946-12398746 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 133
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 21-465
Cow position: chr22:12399198-12398754 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 329

Conread position: 21-561
Cow position: chr22:12499432-12499972 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 153

Conread position: 23-632
Cow position: chr22:12431176-12430567 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 564, 578

Conread position: 23-654
Cow position: chr22:12419152-12418504 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 574

Conread position: 23-667
Cow position: chr22:12458464-12457820 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 559, 578

Conread position: 23-667
Cow position: chr22:12499014-12499658 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 150

Conread position: 24-385
Cow position: chr22:12430923-12430562 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 233
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 24-559
Cow position: chr22:46654326-46654863 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 68

Conread position: 24-662
Cow position: chr22:12431343-12430705 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 573, 581

Conread position: 24-664
Cow position: chr22:46654158-46654798 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 68

Conread position: 24-667
Cow position: chr22:12431427-12430784 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 239

Conread position: 25-667
Cow position: chr22:12431594-12430952 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 74

Conread position: 25-667
Cow position: chr22:12431846-12431204 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 179

Conread position: 25-667
Cow position: chr22:12432182-12431540 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 142

Conread position: 26-524
Cow position: chr22:12399277-12398779 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 245

Conread position: 26-561
Cow position: chr22:12475822-12475287 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 149

Conread position: 26-653
Cow position: chr22:14430297-14430924 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 79

Conread position: 26-663
Cow position: chr22:12385689-12385050 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 19

Conread position: 26-667
Cow position: chr22:12399781-12399140 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 64

Conread position: 26-667
Cow position: chr22:12476158-12475517 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 176

Conread position: 26-667
Cow position: chr22:12476410-12475769 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 239

Conread position: 26-667
Cow position: chr22:12498849-12499490 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 239

Conread position: 26-667
Cow position: chr22:12499101-12499742 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 148

Conread position: 27-305
Cow position: chr22:12399024-12398746 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 185
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 134, 140

Conread position: 27-392
Cow position: chr22:11701333-11701700 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 231
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 133, 150

Conread position: 27-421
Cow position: chr22:11666511-11666905 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 249
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 82, 68

Conread position: 27-476
Cow position: chr22:11641006-11641455 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 285
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 155, 146

Conread position: 27-512
Cow position: chr22:11701165-11701650 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 68

Conread position: 27-554
Cow position: chr22:12385436-12384907 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 150

Conread position: 27-557
Cow position: chr22:12458292-12457762 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 244

Conread position: 27-645
Cow position: chr22:12475905-12475287 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 68

Conread position: 27-645
Cow position: chr22:12499354-12499972 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 68

Conread position: 27-663
Cow position: chr22:12544645-12545281 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 371
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 200, 187

Conread position: 27-664
Cow position: chr22:12431928-12431291 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 65

Conread position: 27-667
Cow position: chr22:11640670-11641310 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 17

Conread position: 27-667
Cow position: chr22:11640754-11641394 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 417, 404

Conread position: 27-667
Cow position: chr22:12385604-12384962 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 50

Conread position: 27-667
Cow position: chr22:12399696-12399056 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 238

Conread position: 27-667
Cow position: chr22:12431676-12431036 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 146

Conread position: 27-667
Cow position: chr22:12431760-12431120 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 142

Conread position: 27-667
Cow position: chr22:12432012-12431372 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 104

Conread position: 27-667
Cow position: chr22:12432264-12431624 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 58

Conread position: 27-667
Cow position: chr22:12499270-12499910 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 148

Conread position: 27-667
Cow position: chr22:14429878-14430518 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 85

Conread position: 27-667
Cow position: chr22:14430214-14430854 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 390
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 74, 85

Conread position: 28-667
Cow position: chr22:12419315-12418659 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 147

Conread position: 32-585
Cow position: chr22:14468044-14468597 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 347
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 220, 234

Conread position: 32-667
Cow position: chr22:14429967-14430602 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 80

Conread position: 33-667
Cow position: chr22:14429800-14430434 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 134

Conread position: 34-580
Cow position: chr22:14430473-14431012 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 335
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 61, 74

Conread position: 34-667
Cow position: chr22:12432341-12431708 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 76

Conread position: 36-667
Cow position: chr22:46654002-46654633 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 56

Conread position: 42-667
Cow position: chr22:14429641-14430266 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 63

Conread position: 45-667
Cow position: chr22:12432498-12431876 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 547, 557

Conread position: 51-667
Cow position: chr22:12399918-12399308 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 44

Conread position: 57-667
Cow position: chr22:11640616-11641226 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 42

Conread position: 101-667
Cow position: chr22:12476419-12475853 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 72

Conread position: 103-667
Cow position: chr22:14467948-14468511 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 8

Conread position: 105-667
Cow position: chr22:14441934-14442496 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 341
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 252, 268

Conread position: 110-512
Cow position: chr22:11666510-11666912 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 69

Conread position: 110-585
Cow position: chr22:11701164-11701639 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 149

Conread position: 111-638
Cow position: chr22:14442192-14442716 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 319
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 314, 332

Conread position: 120-667
Cow position: chr22:14429803-14430350 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 143

Conread position: 128-644
Cow position: chr22:11666444-11666960 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 129

Conread position: 129-667
Cow position: chr22:11701099-11701637 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 128

Conread position: 134-598
Cow position: chr22:14442299-14442759 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 283
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 123, 137

Conread position: 210-422
Cow position: chr22:12545641-12545852 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 142
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 124, 133

Conread position: 225-667
Cow position: chr22:11666457-11666899 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 40

Conread position: 308-667
Cow position: chr22:11666456-11666815 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 239
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 117, 131

Conread position: 348-585
Cow position: chr22:12419331-12419094 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 160
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 423-667
Cow position: chr22:12385712-12385468 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 160
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 41, 47

Conread position: 445-667
Cow position: chr22:12419318-12419096 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 153
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 157, 150

Show alignments to all cow chromosomes.