Cow genome map
| Conread name: | recc2818c_g16.y1 |
| Conread position: | 1-239 |
| Cow position: | chr23:24626514-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 17, 25 |
| Conread position: | 1-305 |
| Cow position: | chr23:24560432-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 205 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-515 |
| Cow position: | chr23:25698617-25698103 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 319 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 18, 7 |
| Conread position: | 1-556 |
| Cow position: | chr23:24547208-24546653 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 15 |
| Conread position: | 7-667 |
| Cow position: | chr23:24639260-24639920 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 171 |
| Conread position: | 8-354 |
| Cow position: | chr23:25626744-25627091 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 86, 79 |
| Conread position: | 9-472 |
| Cow position: | chr23:24535915-24535452 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 166 |
| Conread position: | 9-585 |
| Cow position: | chr23:24522771-24522198 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 101 |
| Conread position: | 10-504 |
| Cow position: | chr23:24522171-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 297 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 9, 201 |
| Conread position: | 12-370 |
| Cow position: | chr23:24654082-24654439 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 87, 81 |
| Conread position: | 12-389 |
| Cow position: | chr23:24560505-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-427 |
| Cow position: | chr23:25660284-25660699 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 268 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 108, 83 |
| Conread position: | 12-665 |
| Cow position: | chr23:24522519-24521864 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 414 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 169, 163 |
| Conread position: | 12-667 |
| Cow position: | chr23:24639349-24640004 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 40 |
| Conread position: | 13-427 |
| Cow position: | chr23:24522602-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 20 |
| Conread position: | 17-667 |
| Cow position: | chr23:25626253-25626899 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 588, 6 |
| Conread position: | 22-585 |
| Cow position: | chr23:25698681-25698118 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 339 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 90, 66 |
| Conread position: | 22-667 |
| Cow position: | chr23:25626005-25626647 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 74 |
| Conread position: | 25-628 |
| Cow position: | chr23:24522338-24521732 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 378 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 149, 340 |
| Conread position: | 26-323 |
| Cow position: | chr23:24626455-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 267, 0 |
| Conread position: | 26-409 |
| Cow position: | chr23:25626678-25627062 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 67 |
| Conread position: | 26-460 |
| Cow position: | chr23:25698509-25698075 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 51, 79 |
| Conread position: | 26-485 |
| Cow position: | chr23:24639615-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-508 |
| Cow position: | chr23:24522670-24522191 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 26-628 |
| Cow position: | chr23:24547267-24546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 67 |
| Conread position: | 26-637 |
| Cow position: | chr23:25626429-25627037 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 575, 149 |
| Conread position: | 27-286 |
| Cow position: | chr23:25723979-25723720 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 253, 247 |
| Conread position: | 27-338 |
| Cow position: | chr23:24639784-24640095 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-403 |
| Cow position: | chr23:24626372-24626746 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 62 |
| Conread position: | 27-473 |
| Cow position: | chr23:25626595-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 146 |
| Conread position: | 27-558 |
| Cow position: | chr23:25660215-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 152 |
| Conread position: | 27-641 |
| Cow position: | chr23:24560658-24560042 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 532, 547 |
| Conread position: | 27-658 |
| Cow position: | chr23:24639448-24640079 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 151 |
| Conread position: | 27-665 |
| Cow position: | chr23:25626346-25626981 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 490, 240 |
| Conread position: | 27-667 |
| Cow position: | chr23:24560910-24560270 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 66 |
| Conread position: | 28-667 |
| Cow position: | chr23:24639197-24639836 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 230 |
| Conread position: | 29-667 |
| Cow position: | chr23:25625929-25626566 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 13 |
| Conread position: | 32-524 |
| Cow position: | chr23:24535976-24535484 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 224 |
| Conread position: | 32-667 |
| Cow position: | chr23:24560821-24560186 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 42-485 |
| Cow position: | chr23:24626303-24626744 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 422, 0 |
| Conread position: | 42-633 |
| Cow position: | chr23:25660146-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 227 |
| Conread position: | 46-639 |
| Cow position: | chr23:24536046-24535453 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 220 |
| Conread position: | 57-393 |
| Cow position: | chr23:24654043-24654379 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 124, 116 |
| Conread position: | 109-557 |
| Cow position: | chr23:25626593-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 109-667 |
| Cow position: | chr23:25724065-25723510 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 343 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 232, 237 |
| Conread position: | 110-637 |
| Cow position: | chr23:24560659-24560132 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 65 |
| Conread position: | 111-664 |
| Cow position: | chr23:25698676-25698123 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 346 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 51, 67 |
| Conread position: | 111-667 |
| Cow position: | chr23:24547266-24546710 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 65 |
| Conread position: | 117-664 |
| Cow position: | chr23:24522747-24522203 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 126-575 |
| Cow position: | chr23:24626303-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 226 |
| Conread position: | 133-658 |
| Cow position: | chr23:24536043-24535518 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 471, 457 |
| Conread position: | 134-661 |
| Cow position: | chr23:24547327-24546800 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 38 |
| Conread position: | 134-667 |
| Cow position: | chr23:24522812-24522284 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 327 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 140-508 |
| Cow position: | chr23:24654042-24654412 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 0 |
| Conread position: | 141-667 |
| Cow position: | chr23:24639226-24639752 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 204 |
| Conread position: | 142-524 |
| Cow position: | chr23:25724116-25723734 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 30 |
| Conread position: | 142-667 |
| Cow position: | chr23:25660162-25660687 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 103 |
| Conread position: | 181-659 |
| Cow position: | chr23:24626274-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 21 |
| Conread position: | 186-637 |
| Cow position: | chr23:25698685-25698234 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 293 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 66, 76 |
| Conread position: | 214-667 |
| Cow position: | chr23:24536046-24535593 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 215-667 |
| Cow position: | chr23:24547330-24546878 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 30 |
| Conread position: | 217-667 |
| Cow position: | chr23:24626154-24626592 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 294 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 162, 90 |
| Conread position: | 225-637 |
| Cow position: | chr23:24654043-24654455 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 367 |
| Conread position: | 235-628 |
| Cow position: | chr23:25724107-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 16, 10 |
| Conread position: | 288-667 |
| Cow position: | chr23:24547341-24546962 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 57 |
| Conread position: | 294-664 |
| Cow position: | chr23:24626303-24626673 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 294-667 |
| Cow position: | chr23:25660146-25660519 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 240 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 228, 209 |
| Conread position: | 308-646 |
| Cow position: | chr23:24654042-24654380 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 227 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 127, 121 |
| Conread position: | 379-667 |
| Cow position: | chr23:25698660-25698372 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 56, 48 |
| Conread position: | 392-666 |
| Cow position: | chr23:24654042-24654316 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 403-667 |
| Cow position: | chr23:25724107-25723843 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 24, 11 |
| Conread position: | 476-667 |
| Cow position: | chr23:24654042-24654233 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.