Cow genome map
| Conread name: | recc2818c_g16.y1 |
| Conread position: | 1-577 |
| Cow position: | chr28:9290125-9290695 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 1-630 |
| Cow position: | chr28:7757789-7758418 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 177 |
| Conread position: | 1-639 |
| Cow position: | chr28:9298938-9299560 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 506, 56 |
| Conread position: | 5-319 |
| Cow position: | chr28:7810632-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-661 |
| Cow position: | chr28:9290044-9290695 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 160 |
| Conread position: | 5-667 |
| Cow position: | chr28:9299024-9299669 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 410 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 327, 138 |
| Conread position: | 8-433 |
| Cow position: | chr28:9290296-9290719 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 271 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 146, 79 |
| Conread position: | 8-500 |
| Cow position: | chr28:9299265-9299750 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 312 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 164, 170 |
| Conread position: | 8-667 |
| Cow position: | chr28:9298861-9299504 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 578, 126 |
| Conread position: | 9-404 |
| Cow position: | chr28:11333588-11333193 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 239, 121 |
| Conread position: | 9-406 |
| Cow position: | chr28:7810552-7810949 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 78 |
| Conread position: | 9-473 |
| Cow position: | chr28:9253148-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-628 |
| Cow position: | chr28:7757713-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 337 |
| Conread position: | 9-631 |
| Cow position: | chr28:9252980-9253602 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-656 |
| Cow position: | chr28:7810309-7810947 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 577, 220 |
| Conread position: | 9-662 |
| Cow position: | chr28:7758217-7758854 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 112 |
| Conread position: | 9-667 |
| Cow position: | chr28:7757461-7758119 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 498, 508 |
| Conread position: | 9-667 |
| Cow position: | chr28:7757545-7758203 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 592, 577 |
| Conread position: | 9-667 |
| Cow position: | chr28:7757629-7758287 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 331, 336 |
| Conread position: | 9-667 |
| Cow position: | chr28:7758049-7758691 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 591, 276 |
| Conread position: | 12-667 |
| Cow position: | chr28:9289967-9290617 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 5 |
| Conread position: | 13-584 |
| Cow position: | chr28:9298617-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 348 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 16-430 |
| Cow position: | chr28:7758461-7758874 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 146, 6 |
| Conread position: | 21-666 |
| Cow position: | chr28:9298707-9299335 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 580, 107 |
| Conread position: | 23-559 |
| Cow position: | chr28:11333910-11333380 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 342 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 248, 231 |
| Conread position: | 26-331 |
| Cow position: | chr28:33210290-33210596 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 155, 147 |
| Conread position: | 26-341 |
| Cow position: | chr28:34673501-34673817 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 56, 76 |
| Conread position: | 26-462 |
| Cow position: | chr28:34679498-34679070 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 149, 108 |
| Conread position: | 26-639 |
| Cow position: | chr28:11333991-11333384 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 149 |
| Conread position: | 26-667 |
| Cow position: | chr28:9252912-9253554 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 574 |
| Conread position: | 27-505 |
| Cow position: | chr28:7758387-7758865 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 304 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 307, 317 |
| Conread position: | 27-523 |
| Cow position: | chr28:34696059-34696555 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 314, 319 |
| Conread position: | 27-667 |
| Cow position: | chr28:34695891-34696531 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 375 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 433, 404 |
| Conread position: | 28-591 |
| Cow position: | chr28:11334073-11333510 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 68 |
| Conread position: | 28-667 |
| Cow position: | chr28:9252584-9253218 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 156 |
| Conread position: | 29-667 |
| Cow position: | chr28:7757397-7758035 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 119 |
| Conread position: | 31-662 |
| Cow position: | chr28:11334154-11333523 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 466, 487 |
| Conread position: | 44-476 |
| Cow position: | chr28:33210223-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 5, 213 |
| Conread position: | 46-584 |
| Cow position: | chr28:34673353-34673891 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 324 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 127, 139 |
| Conread position: | 48-586 |
| Cow position: | chr28:34695996-34696534 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 323 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 29, 37 |
| Conread position: | 50-667 |
| Cow position: | chr28:7757334-7757951 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 551, 533 |
| Conread position: | 111-667 |
| Cow position: | chr28:7810327-7810874 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 198 |
| Conread position: | 116-588 |
| Cow position: | chr28:34679574-34679112 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 45, 34 |
| Conread position: | 134-523 |
| Cow position: | chr28:33210230-33210620 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 244 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 196, 212 |
| Conread position: | 135-667 |
| Cow position: | chr28:9298570-9299098 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 15 |
| Conread position: | 139-667 |
| Cow position: | chr28:34673362-34673890 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 328 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 106, 130 |
| Conread position: | 141-667 |
| Cow position: | chr28:11334212-11333686 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 204 |
| Conread position: | 149-667 |
| Cow position: | chr28:7810281-7810790 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 437, 259 |
| Conread position: | 161-667 |
| Cow position: | chr28:9298347-9298848 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 309 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 167, 5 |
| Conread position: | 165-666 |
| Cow position: | chr28:9289705-9290202 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 306 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 10, 16 |
| Conread position: | 177-667 |
| Cow position: | chr28:34679597-34679117 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 19 |
| Conread position: | 212-583 |
| Cow position: | chr28:33210223-33210596 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 5, 42 |
| Conread position: | 219-667 |
| Cow position: | chr28:34695831-34696279 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 135, 163 |
| Conread position: | 296-667 |
| Cow position: | chr28:33210223-33210596 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 5, 68 |
| Conread position: | 384-664 |
| Cow position: | chr28:33210228-33210508 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 33, 37 |
Show alignments to all cow chromosomes.