Cow genome map
| Conread name: | recc2818c_g16.y1 |
| Conread position: | 1-390 |
| Cow position: | chrX:25324626-25324237 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-570 |
| Cow position: | chrX:29045223-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-667 |
| Cow position: | chrX:25325298-25324632 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 244 |
| Conread position: | 5-400 |
| Cow position: | chrX:25310186-25310578 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 8-520 |
| Cow position: | chrX:25324703-25324195 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 350 |
| Conread position: | 8-667 |
| Cow position: | chrX:25309850-25310509 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 579, 591 |
| Conread position: | 9-408 |
| Cow position: | chrX:29045047-29044648 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-558 |
| Cow position: | chrX:25324786-25324237 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 15 |
| Conread position: | 9-637 |
| Cow position: | chrX:25324870-25324242 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 578, 590 |
| Conread position: | 9-639 |
| Cow position: | chrX:25309935-25310565 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 347 |
| Conread position: | 9-667 |
| Cow position: | chrX:25309767-25310425 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 89 |
| Conread position: | 9-667 |
| Cow position: | chrX:25325122-25324464 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 332, 340 |
| Conread position: | 9-667 |
| Cow position: | chrX:25325206-25324548 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-667 |
| Cow position: | chrX:25325374-25324716 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 81 |
| Conread position: | 9-667 |
| Cow position: | chrX:29045698-29045061 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 422, 281 |
| Conread position: | 12-667 |
| Cow position: | chrX:25325539-25324884 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 99 |
| Conread position: | 12-667 |
| Cow position: | chrX:25325707-25325052 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 333 |
| Conread position: | 21-667 |
| Cow position: | chrX:25325026-25324380 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 489, 497 |
| Conread position: | 23-667 |
| Cow position: | chrX:25309697-25310341 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 570, 583 |
| Conread position: | 24-667 |
| Cow position: | chrX:25325611-25324968 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 565, 558 |
| Conread position: | 26-585 |
| Cow position: | chrX:12627333-12627890 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 62 |
| Conread position: | 26-647 |
| Cow position: | chrX:29045282-29044661 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 59 |
| Conread position: | 26-667 |
| Cow position: | chrX:25324937-25324296 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-667 |
| Cow position: | chrX:25325441-25324800 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 484, 492 |
| Conread position: | 27-577 |
| Cow position: | chrX:25310037-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 243 |
| Conread position: | 27-667 |
| Cow position: | chrX:25325776-25325136 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 322 |
| Conread position: | 28-506 |
| Cow position: | chrX:12627586-12628063 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 308 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 72, 82 |
| Conread position: | 34-346 |
| Cow position: | chrX:12627759-12628071 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 165, 141 |
| Conread position: | 36-667 |
| Cow position: | chrX:13826876-13826245 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 369 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 214, 235 |
| Conread position: | 38-667 |
| Cow position: | chrX:12627429-12628056 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 392 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 69, 52 |
| Conread position: | 39-585 |
| Cow position: | chrX:12627513-12628058 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 326 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 244, 154 |
| Conread position: | 109-580 |
| Cow position: | chrX:14181413-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 75, 68 |
| Conread position: | 109-667 |
| Cow position: | chrX:13826887-13826329 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 324 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 69 |
| Conread position: | 111-663 |
| Cow position: | chrX:29045281-29044729 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 235 |
| Conread position: | 119-423 |
| Cow position: | chrX:29045756-29045452 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 214 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 46, 63 |
| Conread position: | 145-667 |
| Cow position: | chrX:29045331-29044809 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 45 |
| Conread position: | 151-579 |
| Cow position: | chrX:29045808-29045380 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 195 |
| Conread position: | 187-667 |
| Cow position: | chrX:25309693-25310173 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 330 |
| Conread position: | 190-667 |
| Cow position: | chrX:29045367-29044893 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 35 |
| Conread position: | 205-635 |
| Cow position: | chrX:29045838-29045408 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 271 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 51, 56 |
| Conread position: | 205-664 |
| Cow position: | chrX:25325850-25325391 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 291 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 48, 59 |
| Conread position: | 213-667 |
| Cow position: | chrX:29045986-29045544 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 216-667 |
| Cow position: | chrX:12627271-12627720 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 120, 148 |
| Conread position: | 217-667 |
| Cow position: | chrX:25326006-25325556 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 272 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 59, 54 |
| Conread position: | 238-667 |
| Cow position: | chrX:25309660-25310089 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 30 |
| Conread position: | 315-667 |
| Cow position: | chrX:13826933-13826581 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 220 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 271, 292 |
Show alignments to all cow chromosomes.