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Cow genome map

           
Conread name:
           
recc2818c_g18.y1
        

               
Conread position:
               
1-235
               

               
Cow position:
               
chr5:20422267-20422042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
28, 7
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr5:45397495-45397768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 7
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr5:61725890-61726183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
171, 48
               

               
Conread position:
               
4-233
               

               
Cow position:
               
chr5:57575688-57575924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
26, 83
               

               
Conread position:
               
4-278
               

               
Cow position:
               
chr5:28302828-28302557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
24, 126
               

               
Conread position:
               
4-322
               

               
Cow position:
               
chr5:46681794-46681483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
10, 59
               

               
Conread position:
               
4-325
               

               
Cow position:
               
chr5:56014653-56014964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 78
               

               
Conread position:
               
5-171
               

               
Cow position:
               
chr5:50799460-50799620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
5-210
               

               
Cow position:
               
chr5:15598313-15598112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
41, 124
               

               
Conread position:
               
5-210
               

               
Cow position:
               
chr5:19813295-19813094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
62, 17
               

               
Conread position:
               
5-222
               

               
Cow position:
               
chr5:14629893-14629666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
25, 123
               

               
Conread position:
               
5-232
               

               
Cow position:
               
chr5:54375587-54375352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
23, 105
               

               
Conread position:
               
5-232
               

               
Cow position:
               
chr5:67243849-67244068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
166, 23
               

               
Conread position:
               
5-233
               

               
Cow position:
               
chr5:39258442-39258655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
58, 39
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chr5:23678782-23678549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
26, 123
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr5:4032072-4031829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
25, 116
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr5:43457596-43457374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
167, 47
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr5:63987525-63987288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
30, 120
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chr5:50821702-50821942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
25, 74
               

               
Conread position:
               
5-244
               

               
Cow position:
               
chr5:4166578-4166802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
167, 33
               

               
Conread position:
               
5-244
               

               
Cow position:
               
chr5:23168905-23168666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
19, 119
               

               
Conread position:
               
5-244
               

               
Cow position:
               
chr5:26477092-26476858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
80, 37
               

               
Conread position:
               
5-281
               

               
Cow position:
               
chr5:65136199-65136456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
167, 73
               

               
Conread position:
               
5-289
               

               
Cow position:
               
chr5:74580716-74580992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
169, 16
               

               
Conread position:
               
5-290
               

               
Cow position:
               
chr5:6503957-6503670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
59, 78
               

               
Conread position:
               
5-291
               

               
Cow position:
               
chr5:41713222-41713495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
21, 48
               

               
Conread position:
               
5-294
               

               
Cow position:
               
chr5:12351868-12351602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
25, 63
               

               
Conread position:
               
5-294
               

               
Cow position:
               
chr5:68718793-68719077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
25, 79
               

               
Conread position:
               
5-299
               

               
Cow position:
               
chr5:12673542-12673265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
169, 62
               

               
Conread position:
               
5-303
               

               
Cow position:
               
chr5:20779466-20779180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
169, 37
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr5:20127976-20128275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
26, 63
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr5:43923236-43922950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
7, 117
               

               
Conread position:
               
5-306
               

               
Cow position:
               
chr5:49440952-49440630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
29, 119
               

               
Conread position:
               
5-307
               

               
Cow position:
               
chr5:62172336-62172621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
26, 71
               

               
Conread position:
               
5-308
               

               
Cow position:
               
chr5:39447610-39447301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
170, 47
               

               
Conread position:
               
5-308
               

               
Cow position:
               
chr5:40109419-40109708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 14
               

               
Conread position:
               
5-310
               

               
Cow position:
               
chr5:3582494-3582781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
167, 31
               

               
Conread position:
               
5-310
               

               
Cow position:
               
chr5:26262753-26262459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
29, 9
               

               
Conread position:
               
5-310
               

               
Cow position:
               
chr5:34624882-34625174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
21, 69
               

               
Conread position:
               
5-310
               

               
Cow position:
               
chr5:56524095-56524388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
68, 124
               

               
Conread position:
               
5-310
               

               
Cow position:
               
chr5:65941330-65941024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 82
               

               
Conread position:
               
5-311
               

               
Cow position:
               
chr5:30253661-30253967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 82
               

               
Conread position:
               
5-312
               

               
Cow position:
               
chr5:55068631-55068929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
18, 74
               

               
Conread position:
               
5-312
               

               
Cow position:
               
chr5:57101854-57101569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
167, 26
               

               
Conread position:
               
5-317
               

               
Cow position:
               
chr5:45845772-45845457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 83
               

               
Conread position:
               
5-319
               

               
Cow position:
               
chr5:5855788-5856095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
18, 38
               

               
Conread position:
               
5-319
               

               
Cow position:
               
chr5:12761192-12760885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
168, 68
               

               
Conread position:
               
5-319
               

               
Cow position:
               
chr5:35684858-35685168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 79
               

               
Conread position:
               
5-320
               

               
Cow position:
               
chr5:14314445-14314752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
25, 129
               

               
Conread position:
               
5-320
               

               
Cow position:
               
chr5:53835633-53835957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 81
               

               
Conread position:
               
5-322
               

               
Cow position:
               
chr5:12434455-12434773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
22, 129
               

               
Conread position:
               
5-323
               

               
Cow position:
               
chr5:59008-58688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
207, 78
               

               
Conread position:
               
5-324
               

               
Cow position:
               
chr5:44028381-44028068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
16, 80
               

               
Conread position:
               
5-325
               

               
Cow position:
               
chr5:49474625-49474313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 126
               

               
Conread position:
               
5-326
               

               
Cow position:
               
chr5:991386-991715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
41, 53
               

               
Conread position:
               
5-326
               

               
Cow position:
               
chr5:11229749-11229428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
25, 68
               

               
Conread position:
               
5-326
               

               
Cow position:
               
chr5:22242854-22242532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 154
               

               
Conread position:
               
5-327
               

               
Cow position:
               
chr5:35247189-35246861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
29, 17
               

               
Conread position:
               
5-327
               

               
Cow position:
               
chr5:61914490-61914811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
169, 26
               

               
Conread position:
               
5-327
               

               
Cow position:
               
chr5:70270785-70271111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 128
               

               
Conread position:
               
5-328
               

               
Cow position:
               
chr5:12322881-12322567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
169, 123
               

               
Conread position:
               
5-328
               

               
Cow position:
               
chr5:59384770-59384441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
67, 109
               

               
Conread position:
               
5-329
               

               
Cow position:
               
chr5:44446948-44446629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 84
               

               
Conread position:
               
5-329
               

               
Cow position:
               
chr5:54086463-54086799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
27, 70
               

               
Conread position:
               
5-330
               

               
Cow position:
               
chr5:2309636-2309312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
41, 84
               

               
Conread position:
               
5-330
               

               
Cow position:
               
chr5:33560813-33560490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
39, 79
               

               
Conread position:
               
5-333
               

               
Cow position:
               
chr5:41010073-41009761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
30, 65
               

               
Conread position:
               
5-333
               

               
Cow position:
               
chr5:69461254-69461590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 120
               

               
Conread position:
               
5-340
               

               
Cow position:
               
chr5:35969462-35969796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
169, 13
               

               
Conread position:
               
5-341
               

               
Cow position:
               
chr5:5751698-5751350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
16, 56
               

               
Conread position:
               
5-342
               

               
Cow position:
               
chr5:12149465-12149813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
70, 107
               

               
Conread position:
               
5-342
               

               
Cow position:
               
chr5:40152398-40152745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
39, 84
               

               
Conread position:
               
5-343
               

               
Cow position:
               
chr5:36039084-36038747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 123
               

               
Conread position:
               
5-344
               

               
Cow position:
               
chr5:46512843-46512508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 76
               

               
Conread position:
               
5-345
               

               
Cow position:
               
chr5:5111155-5110797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
25, 81
               

               
Conread position:
               
5-345
               

               
Cow position:
               
chr5:55232875-55232563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
169, 35
               

               
Conread position:
               
5-345
               

               
Cow position:
               
chr5:61809762-61809431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
18, 24
               

               
Conread position:
               
5-349
               

               
Cow position:
               
chr5:36868660-36869002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
55, 16
               

               
Conread position:
               
6-231
               

               
Cow position:
               
chr5:69731428-69731647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
46, 107
               

               
Conread position:
               
6-287
               

               
Cow position:
               
chr5:48829082-48829358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
25, 60
               

               
Conread position:
               
6-291
               

               
Cow position:
               
chr5:29353207-29352925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
66, 121
               

               
Conread position:
               
6-310
               

               
Cow position:
               
chr5:19752226-19752527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
24, 44
               

               
Conread position:
               
6-310
               

               
Cow position:
               
chr5:64321673-64321988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
15, 81
               

               
Conread position:
               
6-315
               

               
Cow position:
               
chr5:56877408-56877701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
23, 63
               

               
Conread position:
               
6-327
               

               
Cow position:
               
chr5:34923030-34922720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
178, 63
               

               
Conread position:
               
6-329
               

               
Cow position:
               
chr5:59082268-59081949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
67, 85
               

               
Conread position:
               
7-216
               

               
Cow position:
               
chr5:45803985-45804193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 65
               

               
Conread position:
               
7-308
               

               
Cow position:
               
chr5:14921008-14920702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 99
               

               
Conread position:
               
7-311
               

               
Cow position:
               
chr5:65967806-65967510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
164, 121
               

               
Conread position:
               
7-322
               

               
Cow position:
               
chr5:42670934-42670635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
117, 11
               

               
Conread position:
               
7-329
               

               
Cow position:
               
chr5:53055641-53055308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
7-351
               

               
Cow position:
               
chr5:37941867-37941540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
37, 63
               

               
Conread position:
               
8-227
               

               
Cow position:
               
chr5:20783547-20783766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
151, 72
               

               
Conread position:
               
8-307
               

               
Cow position:
               
chr5:11540124-11539829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
36, 64
               

               
Conread position:
               
11-282
               

               
Cow position:
               
chr5:66366439-66366707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
161, 117
               

               
Conread position:
               
17-268
               

               
Cow position:
               
chr5:7193358-7193597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
157, 29
               

               
Conread position:
               
19-244
               

               
Cow position:
               
chr5:40241982-40242202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
62, 109
               

               
Conread position:
               
19-280
               

               
Cow position:
               
chr5:50087685-50087965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
20-314
               

               
Cow position:
               
chr5:66257578-66257864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
7, 51
               

               
Conread position:
               
21-299
               

               
Cow position:
               
chr5:17555090-17554820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 27
               

               
Conread position:
               
21-312
               

               
Cow position:
               
chr5:3771790-3772070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
153, 62
               

               
Conread position:
               
21-329
               

               
Cow position:
               
chr5:36650492-36650799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
132, 49
               

               
Conread position:
               
21-342
               

               
Cow position:
               
chr5:39333596-39333270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
46, 61
               

               
Conread position:
               
22-166
               

               
Cow position:
               
chr5:34638827-34638965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
22-210
               

               
Cow position:
               
chr5:31640363-31640551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 95
               

               
Conread position:
               
22-214
               

               
Cow position:
               
chr5:26150478-26150291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
150, 58
               

               
Conread position:
               
22-215
               

               
Cow position:
               
chr5:15426472-15426670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
54, 98
               

               
Conread position:
               
22-216
               

               
Cow position:
               
chr5:1461030-1461222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
49, 62
               

               
Conread position:
               
22-216
               

               
Cow position:
               
chr5:72951784-72951977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
42, 52
               

               
Conread position:
               
22-222
               

               
Cow position:
               
chr5:8821070-8820874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
144, 12
               

               
Conread position:
               
22-225
               

               
Cow position:
               
chr5:7697948-7698142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
158, 46
               

               
Conread position:
               
22-225
               

               
Cow position:
               
chr5:47323408-47323604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
150, 59
               

               
Conread position:
               
22-225
               

               
Cow position:
               
chr5:72564705-72564906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
146, 43
               

               
Conread position:
               
22-233
               

               
Cow position:
               
chr5:45574558-45574771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
150, 99
               

               
Conread position:
               
22-234
               

               
Cow position:
               
chr5:63150224-63150018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
152, 14
               

               
Conread position:
               
22-235
               

               
Cow position:
               
chr5:6045234-6045447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
150, 105
               

               
Conread position:
               
22-235
               

               
Cow position:
               
chr5:56317240-56317440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
151, 48
               

               
Conread position:
               
22-236
               

               
Cow position:
               
chr5:64758828-64758615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
65, 107
               

               
Conread position:
               
22-237
               

               
Cow position:
               
chr5:458434-458641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
150, 51
               

               
Conread position:
               
22-237
               

               
Cow position:
               
chr5:41545951-41545740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
140, 38
               

               
Conread position:
               
22-237
               

               
Cow position:
               
chr5:43929794-43929581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
150, 9
               

               
Conread position:
               
22-237
               

               
Cow position:
               
chr5:62378734-62378933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
150, 42
               

               
Conread position:
               
22-237
               

               
Cow position:
               
chr5:69636178-69636377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
152, 52
               

               
Conread position:
               
22-241
               

               
Cow position:
               
chr5:50533444-50533231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
150, 100
               

               
Conread position:
               
22-242
               

               
Cow position:
               
chr5:16206212-16205993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
144, 58
               

               
Conread position:
               
22-244
               

               
Cow position:
               
chr5:13717624-13717410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
153, 51
               

               
Conread position:
               
22-244
               

               
Cow position:
               
chr5:45420191-45419975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
145, 51
               

               
Conread position:
               
22-244
               

               
Cow position:
               
chr5:46509924-46509706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
150, 37
               

               
Conread position:
               
22-245
               

               
Cow position:
               
chr5:51935135-51935350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
152, 55
               

               
Conread position:
               
22-246
               

               
Cow position:
               
chr5:37814565-37814791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
30, 107
               

               
Conread position:
               
22-291
               

               
Cow position:
               
chr5:34109116-34108850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
185, 42
               

               
Conread position:
               
22-291
               

               
Cow position:
               
chr5:63234883-63234616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
151, 59
               

               
Conread position:
               
22-291
               

               
Cow position:
               
chr5:64137197-64137465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
41, 61
               

               
Conread position:
               
22-294
               

               
Cow position:
               
chr5:16179582-16179313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
62, 51
               

               
Conread position:
               
22-295
               

               
Cow position:
               
chr5:57419848-57419585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
152, 16
               

               
Conread position:
               
22-299
               

               
Cow position:
               
chr5:17063147-17062864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
50, 81
               

               
Conread position:
               
22-303
               

               
Cow position:
               
chr5:50599999-50600265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
142, 27
               

               
Conread position:
               
22-303
               

               
Cow position:
               
chr5:66551956-66551673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
122, 60
               

               
Conread position:
               
22-304
               

               
Cow position:
               
chr5:55955850-55956130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
130, 51
               

               
Conread position:
               
22-304
               

               
Cow position:
               
chr5:67932521-67932246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
22-308
               

               
Cow position:
               
chr5:4220927-4221206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
150, 47
               

               
Conread position:
               
22-308
               

               
Cow position:
               
chr5:44848077-44847803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chr5:9894186-9893899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
27, 104
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chr5:21617400-21617681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 38
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chr5:29903575-29903317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
150, 43
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chr5:30629215-30628927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 20
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chr5:35459353-35459070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
145, 59
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chr5:42050494-42050770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
150, 20
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chr5:57935166-57934894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
149, 58
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chr5:59627031-59626746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 101
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chr5:64140476-64140764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
119, 57
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chr5:65343555-65343855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
44, 114
               

               
Conread position:
               
22-311
               

               
Cow position:
               
chr5:31475627-31475911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
103, 56
               

               
Conread position:
               
22-311
               

               
Cow position:
               
chr5:43402843-43403136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 108
               

               
Conread position:
               
22-311
               

               
Cow position:
               
chr5:47871100-47870827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
14, 60
               

               
Conread position:
               
22-312
               

               
Cow position:
               
chr5:56070799-56071086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 100
               

               
Conread position:
               
22-314
               

               
Cow position:
               
chr5:25035300-25035024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
152, 50
               

               
Conread position:
               
22-315
               

               
Cow position:
               
chr5:29681024-29681326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
72, 62
               

               
Conread position:
               
22-316
               

               
Cow position:
               
chr5:17087079-17086784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 27
               

               
Conread position:
               
22-316
               

               
Cow position:
               
chr5:19278757-19278472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
152, 40
               

               
Conread position:
               
22-317
               

               
Cow position:
               
chr5:7044764-7044473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 59
               

               
Conread position:
               
22-317
               

               
Cow position:
               
chr5:7057457-7057164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
190, 42
               

               
Conread position:
               
22-320
               

               
Cow position:
               
chr5:11769211-11769508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
12, 67
               

               
Conread position:
               
22-320
               

               
Cow position:
               
chr5:55756482-55756177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
49, 105
               

               
Conread position:
               
22-320
               

               
Cow position:
               
chr5:57526975-57526688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
188, 51
               

               
Conread position:
               
22-321
               

               
Cow position:
               
chr5:30845056-30845342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 16
               

               
Conread position:
               
22-322
               

               
Cow position:
               
chr5:7012905-7012612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
152, 60
               

               
Conread position:
               
22-322
               

               
Cow position:
               
chr5:41165029-41165322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 50
               

               
Conread position:
               
22-322
               

               
Cow position:
               
chr5:47601762-47602048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
152, 42
               

               
Conread position:
               
22-322
               

               
Cow position:
               
chr5:70951933-70951656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
190, 48
               

               
Conread position:
               
22-322
               

               
Cow position:
               
chr5:72895630-72895925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
150, 18
               

               
Conread position:
               
22-323
               

               
Cow position:
               
chr5:12557349-12557048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 109
               

               
Conread position:
               
22-323
               

               
Cow position:
               
chr5:32975608-32975321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
189, 40
               

               
Conread position:
               
22-323
               

               
Cow position:
               
chr5:45225881-45225581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
49, 109
               

               
Conread position:
               
22-323
               

               
Cow position:
               
chr5:57756088-57755795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
190, 88
               

               
Conread position:
               
22-323
               

               
Cow position:
               
chr5:57768038-57767748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
151, 44
               

               
Conread position:
               
22-323
               

               
Cow position:
               
chr5:62107548-62107244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
110, 48
               

               
Conread position:
               
22-324
               

               
Cow position:
               
chr5:21828809-21829104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 51
               

               
Conread position:
               
22-324
               

               
Cow position:
               
chr5:24996280-24995979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 61
               

               
Conread position:
               
22-324
               

               
Cow position:
               
chr5:34561955-34562249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 106
               

               
Conread position:
               
22-324
               

               
Cow position:
               
chr5:52165235-52164934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 58
               

               
Conread position:
               
22-324
               

               
Cow position:
               
chr5:60016110-60016401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
152, 58
               

               
Conread position:
               
22-325
               

               
Cow position:
               
chr5:26467566-26467867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
57, 48
               

               
Conread position:
               
22-325
               

               
Cow position:
               
chr5:52667974-52668280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
106, 49
               

               
Conread position:
               
22-326
               

               
Cow position:
               
chr5:17999549-17999251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
33, 22
               

               
Conread position:
               
22-326
               

               
Cow position:
               
chr5:30302836-30303126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 72
               

               
Conread position:
               
22-326
               

               
Cow position:
               
chr5:35208206-35208507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
19, 52
               

               
Conread position:
               
22-326
               

               
Cow position:
               
chr5:42845654-42845355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
66, 98
               

               
Conread position:
               
22-327
               

               
Cow position:
               
chr5:56028584-56028303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
152, 14
               

               
Conread position:
               
22-327
               

               
Cow position:
               
chr5:72903286-72902997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
150, 42
               

               
Conread position:
               
22-328
               

               
Cow position:
               
chr5:29097310-29097606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
152, 38
               

               
Conread position:
               
22-328
               

               
Cow position:
               
chr5:33833987-33834281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
187, 42
               

               
Conread position:
               
22-329
               

               
Cow position:
               
chr5:18289073-18289362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
152, 58
               

               
Conread position:
               
22-330
               

               
Cow position:
               
chr5:11668242-11667937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
29, 58
               

               
Conread position:
               
22-330
               

               
Cow position:
               
chr5:30276640-30276931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 42
               

               
Conread position:
               
22-330
               

               
Cow position:
               
chr5:55176833-55177126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
50, 90
               

               
Conread position:
               
22-330
               

               
Cow position:
               
chr5:55966936-55966627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 59
               

               
Conread position:
               
22-330
               

               
Cow position:
               
chr5:61455788-61456091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
150, 106
               

               
Conread position:
               
22-330
               

               
Cow position:
               
chr5:65752800-65753107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 99
               

               
Conread position:
               
22-331
               

               
Cow position:
               
chr5:37090696-37090389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
89, 26
               

               
Conread position:
               
22-331
               

               
Cow position:
               
chr5:41935714-41935409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
12, 55
               

               
Conread position:
               
22-331
               

               
Cow position:
               
chr5:50857879-50858183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
121, 51
               

               
Conread position:
               
22-331
               

               
Cow position:
               
chr5:51053707-51053400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
98, 57
               

               
Conread position:
               
22-331
               

               
Cow position:
               
chr5:63627582-63627294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
190, 31
               

               
Conread position:
               
22-332
               

               
Cow position:
               
chr5:16893830-16893532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
150, 65
               

               
Conread position:
               
22-334
               

               
Cow position:
               
chr5:6439090-6438778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 22
               

               
Conread position:
               
22-334
               

               
Cow position:
               
chr5:11427292-11426982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
41, 60
               

               
Conread position:
               
22-334
               

               
Cow position:
               
chr5:43604086-43604386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
153, 40
               

               
Conread position:
               
22-335
               

               
Cow position:
               
chr5:4280391-4280696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
22-335
               

               
Cow position:
               
chr5:25366034-25366351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
49, 182
               

               
Conread position:
               
22-335
               

               
Cow position:
               
chr5:27154966-27155253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
22-335
               

               
Cow position:
               
chr5:57074390-57074086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 19
               

               
Conread position:
               
22-336
               

               
Cow position:
               
chr5:1247206-1247516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
152, 106
               

               
Conread position:
               
22-337
               

               
Cow position:
               
chr5:29827992-29828301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
22-337
               

               
Cow position:
               
chr5:59395600-59395923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
91, 48
               

               
Conread position:
               
22-338
               

               
Cow position:
               
chr5:38833066-38833368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 12
               

               
Conread position:
               
22-339
               

               
Cow position:
               
chr5:44673631-44673961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
49, 131
               

               
Conread position:
               
22-339
               

               
Cow position:
               
chr5:50713828-50713496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
50, 92
               

               
Conread position:
               
22-340
               

               
Cow position:
               
chr5:19335841-19335523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 64
               

               
Conread position:
               
22-341
               

               
Cow position:
               
chr5:54311278-54311613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
22-342
               

               
Cow position:
               
chr5:35826546-35826849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 34
               

               
Conread position:
               
22-342
               

               
Cow position:
               
chr5:61829925-61829614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
110, 45
               

               
Conread position:
               
22-342
               

               
Cow position:
               
chr5:66581908-66582228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
123, 52
               

               
Conread position:
               
22-344
               

               
Cow position:
               
chr5:63647531-63647218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
200, 50
               

               
Conread position:
               
22-346
               

               
Cow position:
               
chr5:30178564-30178234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
62, 33
               

               
Conread position:
               
22-347
               

               
Cow position:
               
chr5:32394544-32394862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
126, 22
               

               
Conread position:
               
22-350
               

               
Cow position:
               
chr5:16214627-16214947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
152, 106
               

               
Conread position:
               
22-350
               

               
Cow position:
               
chr5:43371252-43370923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 63
               

               
Conread position:
               
22-350
               

               
Cow position:
               
chr5:61771057-61771389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
110, 46
               

               
Conread position:
               
22-351
               

               
Cow position:
               
chr5:34300859-34301187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
185, 106
               

               
Conread position:
               
23-242
               

               
Cow position:
               
chr5:56339074-56338861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
149, 11
               

               
Conread position:
               
23-257
               

               
Cow position:
               
chr5:30949972-30949740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
151, 19
               

               
Conread position:
               
23-264
               

               
Cow position:
               
chr5:7755618-7755383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
149, 58
               

               
Conread position:
               
23-268
               

               
Cow position:
               
chr5:60183745-60183984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 59
               

               
Conread position:
               
23-281
               

               
Cow position:
               
chr5:55796017-55795773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
125, 19
               

               
Conread position:
               
23-296
               

               
Cow position:
               
chr5:57994923-57994668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
152, 49
               

               
Conread position:
               
23-310
               

               
Cow position:
               
chr5:66972372-66972656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
154, 50
               

               
Conread position:
               
23-311
               

               
Cow position:
               
chr5:56548522-56548793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
23-317
               

               
Cow position:
               
chr5:74643727-74643452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
149, 47
               

               
Conread position:
               
23-326
               

               
Cow position:
               
chr5:25495405-25495112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
151, 74
               

               
Conread position:
               
23-328
               

               
Cow position:
               
chr5:18574117-18574426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
151, 56
               

               
Conread position:
               
23-345
               

               
Cow position:
               
chr5:20995151-20994829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
105, 245
               

               
Conread position:
               
24-243
               

               
Cow position:
               
chr5:67212301-67212519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
43, 106
               

               
Conread position:
               
24-244
               

               
Cow position:
               
chr5:44726381-44726171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
148, 39
               

               
Conread position:
               
24-294
               

               
Cow position:
               
chr5:53946840-53947109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
10, 57
               

               
Conread position:
               
24-301
               

               
Cow position:
               
chr5:17768199-17767936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
120, 47
               

               
Conread position:
               
24-333
               

               
Cow position:
               
chr5:64027063-64026760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
150, 40
               

               
Conread position:
               
25-222
               

               
Cow position:
               
chr5:74015886-74016079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
147, 58
               

               
Conread position:
               
25-294
               

               
Cow position:
               
chr5:64523921-64523654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
51, 29
               

               
Conread position:
               
25-323
               

               
Cow position:
               
chr5:45472226-45472514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
137, 56
               

               
Conread position:
               
26-255
               

               
Cow position:
               
chr5:37646599-37646377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
183, 96
               

               
Conread position:
               
26-265
               

               
Cow position:
               
chr5:30805115-30805339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
148, 29
               

               
Conread position:
               
26-274
               

               
Cow position:
               
chr5:66466265-66466504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
216, 47
               

               
Conread position:
               
26-310
               

               
Cow position:
               
chr5:28224401-28224668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
186, 53
               

               
Conread position:
               
26-317
               

               
Cow position:
               
chr5:34976896-34976606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
26, 48
               

               
Conread position:
               
26-324
               

               
Cow position:
               
chr5:24136660-24136974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
182, 47
               

               
Conread position:
               
26-328
               

               
Cow position:
               
chr5:63240923-63241227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
155, 54
               

               
Conread position:
               
26-339
               

               
Cow position:
               
chr5:12901864-12902175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
146, 44
               

               
Conread position:
               
26-348
               

               
Cow position:
               
chr5:20843453-20843134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
46, 88
               

               
Conread position:
               
27-310
               

               
Cow position:
               
chr5:43408411-43408114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
147, 55
               

               
Conread position:
               
28-285
               

               
Cow position:
               
chr5:30418923-30419178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
144, 55
               

               
Conread position:
               
29-345
               

               
Cow position:
               
chr5:15470882-15471179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
145, 52
               

               
Conread position:
               
30-253
               

               
Cow position:
               
chr5:67118369-67118587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
142, 43
               

               
Conread position:
               
30-351
               

               
Cow position:
               
chr5:65140243-65140566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
98, 33
               

               
Conread position:
               
31-289
               

               
Cow position:
               
chr5:50482912-50482653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
95, 46
               

               
Conread position:
               
31-331
               

               
Cow position:
               
chr5:45404993-45405295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
101, 42
               

               
Conread position:
               
32-332
               

               
Cow position:
               
chr5:15363833-15364117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
140, 52
               

               
Conread position:
               
33-294
               

               
Cow position:
               
chr5:26097249-26097500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
144, 31
               

               
Conread position:
               
33-325
               

               
Cow position:
               
chr5:63192788-63192513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
139, 40
               

               
Conread position:
               
33-326
               

               
Cow position:
               
chr5:61784774-61784482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
140, 38
               

               
Conread position:
               
34-222
               

               
Cow position:
               
chr5:56153569-56153754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
138, 92
               

               
Conread position:
               
34-222
               

               
Cow position:
               
chr5:56517057-56517243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
140, 39
               

               
Conread position:
               
34-332
               

               
Cow position:
               
chr5:52001666-52001372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
140, 52
               

               
Conread position:
               
35-298
               

               
Cow position:
               
chr5:72006537-72006283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
142, 85
               

               
Conread position:
               
36-332
               

               
Cow position:
               
chr5:69099675-69099967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 47
               

               
Conread position:
               
36-337
               

               
Cow position:
               
chr5:50943190-50942903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
138, 37
               

               
Conread position:
               
38-274
               

               
Cow position:
               
chr5:17602242-17602015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
136, 31
               

               
Conread position:
               
38-315
               

               
Cow position:
               
chr5:49342090-49341804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
134, 13
               

               
Conread position:
               
39-241
               

               
Cow position:
               
chr5:35982781-35982577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
125, 83
               

               
Conread position:
               
39-340
               

               
Cow position:
               
chr5:66530877-66531165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
40-241
               

               
Cow position:
               
chr5:61102675-61102873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
131, 41
               

               
Conread position:
               
40-244
               

               
Cow position:
               
chr5:52083297-52083503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
60, 33
               

               
Conread position:
               
40-280
               

               
Cow position:
               
chr5:71724261-71724485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
172, 33
               

               
Conread position:
               
40-320
               

               
Cow position:
               
chr5:20288303-20288023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 40
               

               
Conread position:
               
42-324
               

               
Cow position:
               
chr5:22667040-22667310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
30, 46
               

               
Conread position:
               
45-323
               

               
Cow position:
               
chr5:17104816-17105083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
129, 83
               

               
Conread position:
               
48-310
               

               
Cow position:
               
chr5:22795182-22795432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
27, 38
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr5:8736321-8736039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
75, 35
               

               
Conread position:
               
48-328
               

               
Cow position:
               
chr5:57686772-57686500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 74
               

               
Conread position:
               
48-330
               

               
Cow position:
               
chr5:26549173-26548896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 36
               

               
Conread position:
               
48-330
               

               
Cow position:
               
chr5:62811792-62812074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
126, 16
               

               
Conread position:
               
49-322
               

               
Cow position:
               
chr5:54875730-54875453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
108, 32
               

               
Conread position:
               
51-291
               

               
Cow position:
               
chr5:49501853-49501611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
32, 19
               

               
Conread position:
               
52-328
               

               
Cow position:
               
chr5:30232878-30233150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
122, 77
               

               
Conread position:
               
54-244
               

               
Cow position:
               
chr5:57230365-57230177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
120, 19
               

               
Conread position:
               
54-245
               

               
Cow position:
               
chr5:61875517-61875698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
120, 26
               

               
Conread position:
               
56-305
               

               
Cow position:
               
chr5:29460186-29460422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
155, 26
               

               
Conread position:
               
56-329
               

               
Cow position:
               
chr5:33273667-33273941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
17, 74
               

               
Conread position:
               
57-312
               

               
Cow position:
               
chr5:4226322-4226585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
122, 71
               

               
Conread position:
               
57-326
               

               
Cow position:
               
chr5:45187142-45186876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
117, 71
               

               
Conread position:
               
63-268
               

               
Cow position:
               
chr5:60668681-60668882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
64, 28
               

               
Conread position:
               
63-333
               

               
Cow position:
               
chr5:74040024-74039757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
33, 68
               

               
Conread position:
               
64-317
               

               
Cow position:
               
chr5:64176143-64175898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
110, 19
               

               
Conread position:
               
64-323
               

               
Cow position:
               
chr5:43858438-43858179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
13, 47
               

               
Conread position:
               
65-307
               

               
Cow position:
               
chr5:18062340-18062087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 54
               

               
Conread position:
               
66-278
               

               
Cow position:
               
chr5:56334522-56334326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
108, 14
               

               
Conread position:
               
66-332
               

               
Cow position:
               
chr5:35229154-35228895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
164, 62
               

               
Conread position:
               
66-348
               

               
Cow position:
               
chr5:12873735-12874015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
108, 63
               

               
Conread position:
               
67-307
               

               
Cow position:
               
chr5:48867479-48867247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
107, 61
               

               
Conread position:
               
67-325
               

               
Cow position:
               
chr5:30247536-30247284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
145, 12
               

               
Conread position:
               
67-330
               

               
Cow position:
               
chr5:73253398-73253650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
145, 14
               

               
Conread position:
               
68-351
               

               
Cow position:
               
chr5:16938036-16937770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
142, 60
               

               
Conread position:
               
69-324
               

               
Cow position:
               
chr5:59627088-59627332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
105, 15
               

               
Conread position:
               
69-327
               

               
Cow position:
               
chr5:39937103-39937359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
105, 56
               

               
Conread position:
               
69-350
               

               
Cow position:
               
chr5:70678656-70678377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
105, 60
               

               
Conread position:
               
70-268
               

               
Cow position:
               
chr5:11289405-11289204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
61, 67
               

               
Conread position:
               
70-323
               

               
Cow position:
               
chr5:52137923-52138174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
104, 66
               

               
Conread position:
               
70-333
               

               
Cow position:
               
chr5:29829907-29829639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
49, 137
               

               
Conread position:
               
72-336
               

               
Cow position:
               
chr5:56613574-56613314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
100, 58
               

               
Conread position:
               
73-238
               

               
Cow position:
               
chr5:9233998-9233832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
99, 48
               

               
Conread position:
               
73-342
               

               
Cow position:
               
chr5:35989748-35990020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
38, 33
               

               
Conread position:
               
73-348
               

               
Cow position:
               
chr5:34915063-34914788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
11, 49
               

               
Conread position:
               
74-241
               

               
Cow position:
               
chr5:4710159-4709995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
100, 54
               

               
Conread position:
               
74-306
               

               
Cow position:
               
chr5:69383247-69383473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 49
               

               
Conread position:
               
74-310
               

               
Cow position:
               
chr5:51298717-51298489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
100, 14
               

               
Conread position:
               
74-338
               

               
Cow position:
               
chr5:39035772-39036038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
100, 54
               

               
Conread position:
               
75-237
               

               
Cow position:
               
chr5:9170589-9170429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
10, 54
               

               
Conread position:
               
75-306
               

               
Cow position:
               
chr5:4267662-4267882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
8, 54
               

               
Conread position:
               
75-319
               

               
Cow position:
               
chr5:44163376-44163135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
99, 53
               

               
Conread position:
               
75-339
               

               
Cow position:
               
chr5:73168015-73167759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
99, 9
               

               
Conread position:
               
76-310
               

               
Cow position:
               
chr5:71015893-71015659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
97, 15
               

               
Conread position:
               
76-328
               

               
Cow position:
               
chr5:52108274-52108017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
98, 34
               

               
Conread position:
               
76-333
               

               
Cow position:
               
chr5:52852965-52853216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
98, 34
               

               
Conread position:
               
77-305
               

               
Cow position:
               
chr5:72045678-72045456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
97, 6
               

               
Conread position:
               
77-306
               

               
Cow position:
               
chr5:12654915-12654687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
71, 7
               

               
Conread position:
               
78-225
               

               
Cow position:
               
chr5:45126647-45126794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
94, 50
               

               
Conread position:
               
78-324
               

               
Cow position:
               
chr5:50723041-50723289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
6, 51
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr5:50824586-50824841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
11, 52
               

               
Conread position:
               
78-351
               

               
Cow position:
               
chr5:11562727-11562460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
96, 50
               

               
Conread position:
               
80-244
               

               
Cow position:
               
chr5:51490249-51490087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
9, 37
               

               
Conread position:
               
80-321
               

               
Cow position:
               
chr5:65552710-65552483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
132, 15
               

               
Conread position:
               
80-332
               

               
Cow position:
               
chr5:29970703-29970962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
51, 195
               

               
Conread position:
               
81-241
               

               
Cow position:
               
chr5:24069389-24069546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
21, 40
               

               
Conread position:
               
81-306
               

               
Cow position:
               
chr5:51065529-51065737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
131, 44
               

               
Conread position:
               
81-306
               

               
Cow position:
               
chr5:60523732-60523949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
25, 44
               

               
Conread position:
               
81-325
               

               
Cow position:
               
chr5:49919922-49920167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
93, 10
               

               
Conread position:
               
81-328
               

               
Cow position:
               
chr5:15364268-15364518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
91, 47
               

               
Conread position:
               
81-329
               

               
Cow position:
               
chr5:6520010-6520253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
72, 29
               

               
Conread position:
               
81-332
               

               
Cow position:
               
chr5:2469208-2468964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
131, 47
               

               
Conread position:
               
81-338
               

               
Cow position:
               
chr5:65679971-65679718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
93, 47
               

               
Conread position:
               
81-342
               

               
Cow position:
               
chr5:46541056-46540801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
93, 47
               

               
Conread position:
               
81-347
               

               
Cow position:
               
chr5:67634518-67634245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
92, 58
               

               
Conread position:
               
82-305
               

               
Cow position:
               
chr5:5017374-5017592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
91, 20
               

               
Conread position:
               
82-333
               

               
Cow position:
               
chr5:50101376-50101132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
71, 33
               

               
Conread position:
               
82-334
               

               
Cow position:
               
chr5:68537665-68537416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
92, 46
               

               
Conread position:
               
82-340
               

               
Cow position:
               
chr5:61049332-61049592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
90, 46
               

               
Conread position:
               
83-311
               

               
Cow position:
               
chr5:30561933-30562155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
94, 45
               

               
Conread position:
               
83-327
               

               
Cow position:
               
chr5:70750184-70749942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
128, 26
               

               
Conread position:
               
83-332
               

               
Cow position:
               
chr5:5760312-5760057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
129, 45
               

               
Conread position:
               
83-337
               

               
Cow position:
               
chr5:57062528-57062278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
91, 45
               

               
Conread position:
               
83-337
               

               
Cow position:
               
chr5:65760528-65760278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
94, 11
               

               
Conread position:
               
84-332
               

               
Cow position:
               
chr5:12299913-12300158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
90, 45
               

               
Conread position:
               
84-347
               

               
Cow position:
               
chr5:63187881-63187612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
42, 122
               

               
Conread position:
               
85-288
               

               
Cow position:
               
chr5:35513218-35513425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
89, 24
               

               
Conread position:
               
85-338
               

               
Cow position:
               
chr5:60515025-60514774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
127, 43
               

               
Conread position:
               
85-344
               

               
Cow position:
               
chr5:55965891-55965631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
60, 43
               

               
Conread position:
               
86-271
               

               
Cow position:
               
chr5:17605130-17604949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
88, 29
               

               
Conread position:
               
88-345
               

               
Cow position:
               
chr5:56549370-56549630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
57, 32
               

               
Conread position:
               
91-310
               

               
Cow position:
               
chr5:60948142-60948358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
83, 24
               

               
Conread position:
               
91-322
               

               
Cow position:
               
chr5:40241755-40241972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
83, 37
               

               
Conread position:
               
91-328
               

               
Cow position:
               
chr5:52137045-52136804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
80, 37
               

               
Conread position:
               
91-331
               

               
Cow position:
               
chr5:17828470-17828230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
83, 37
               

               
Conread position:
               
91-337
               

               
Cow position:
               
chr5:58519407-58519161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
82, 38
               

               
Conread position:
               
91-343
               

               
Cow position:
               
chr5:26497668-26497425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
83, 19
               

               
Conread position:
               
92-309
               

               
Cow position:
               
chr5:51247121-51246912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
84, 29
               

               
Conread position:
               
93-300
               

               
Cow position:
               
chr5:38168905-38169108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
82, 30
               

               
Conread position:
               
93-330
               

               
Cow position:
               
chr5:64060457-64060693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
81, 16
               

               
Conread position:
               
94-290
               

               
Cow position:
               
chr5:46704287-46704094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
80, 29
               

               
Conread position:
               
94-321
               

               
Cow position:
               
chr5:55942367-55942142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
83, 30
               

               
Conread position:
               
95-334
               

               
Cow position:
               
chr5:2240976-2240739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
78, 26
               

               
Conread position:
               
97-323
               

               
Cow position:
               
chr5:26147606-26147827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
77, 26
               

               
Conread position:
               
98-332
               

               
Cow position:
               
chr5:26167437-26167666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
76, 24
               

               
Conread position:
               
102-313
               

               
Cow position:
               
chr5:54312621-54312828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
72, 26
               

               
Conread position:
               
103-291
               

               
Cow position:
               
chr5:38040543-38040361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
70, 25
               

               
Conread position:
               
105-320
               

               
Cow position:
               
chr5:63173021-63172812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
70, 6
               

               
Conread position:
               
106-304
               

               
Cow position:
               
chr5:75760250-75760048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
66, 22
               

               
Conread position:
               
106-310
               

               
Cow position:
               
chr5:57497403-57497200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
66, 123
               

               
Conread position:
               
106-328
               

               
Cow position:
               
chr5:51289567-51289357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
71, 22
               

               
Conread position:
               
106-339
               

               
Cow position:
               
chr5:60596107-60595858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
54, 21
               

               
Conread position:
               
110-294
               

               
Cow position:
               
chr5:20812570-20812759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
110-310
               

               
Cow position:
               
chr5:6086315-6086115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
64, 18
               

               
Conread position:
               
112-294
               

               
Cow position:
               
chr5:53980724-53980542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
62, 16
               

               
Conread position:
               
112-306
               

               
Cow position:
               
chr5:29256679-29256486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
64, 16
               

               
Conread position:
               
112-328
               

               
Cow position:
               
chr5:7177177-7177399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 127
               

               
Conread position:
               
112-335
               

               
Cow position:
               
chr5:32935771-32935996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
101, 181
               

               
Conread position:
               
113-323
               

               
Cow position:
               
chr5:3743349-3743563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
9, 95
               

               
Conread position:
               
113-340
               

               
Cow position:
               
chr5:20882597-20882359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
9, 185
               

               
Conread position:
               
114-322
               

               
Cow position:
               
chr5:36205719-36205928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
58, 90
               

               
Conread position:
               
114-343
               

               
Cow position:
               
chr5:3817655-3817427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
63, 14
               

               
Conread position:
               
115-320
               

               
Cow position:
               
chr5:16668728-16668926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
57, 7
               

               
Conread position:
               
115-321
               

               
Cow position:
               
chr5:3677754-3677965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
57, 13
               

               
Conread position:
               
115-336
               

               
Cow position:
               
chr5:56433911-56434139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
116-294
               

               
Cow position:
               
chr5:69682318-69682137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
116-323
               

               
Cow position:
               
chr5:56525681-56525470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
58, 88
               

               
Conread position:
               
116-347
               

               
Cow position:
               
chr5:21339238-21338996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
117-349
               

               
Cow position:
               
chr5:31648452-31648682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
57, 28
               

               
Conread position:
               
118-331
               

               
Cow position:
               
chr5:2355553-2355765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
56, 83
               

               
Conread position:
               
120-320
               

               
Cow position:
               
chr5:70591589-70591777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
57, 93
               

               
Conread position:
               
121-323
               

               
Cow position:
               
chr5:24915491-24915286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
121-324
               

               
Cow position:
               
chr5:46710618-46710824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
24, 32
               

               
Conread position:
               
121-324
               

               
Cow position:
               
chr5:46715518-46715724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 32
               

               
Conread position:
               
123-265
               

               
Cow position:
               
chr5:41522640-41522503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
51, 112
               

               
Conread position:
               
123-326
               

               
Cow position:
               
chr5:37842241-37842037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
51, 118
               

               
Conread position:
               
123-331
               

               
Cow position:
               
chr5:43465563-43465775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
50, 81
               

               
Conread position:
               
123-349
               

               
Cow position:
               
chr5:53779192-53779420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
5, 108
               

               
Conread position:
               
124-290
               

               
Cow position:
               
chr5:51125970-51125812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 102
               

               
Conread position:
               
124-294
               

               
Cow position:
               
chr5:51233980-51233814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
50, 108
               

               
Conread position:
               
124-294
               

               
Cow position:
               
chr5:54753208-54753039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
50, 14
               

               
Conread position:
               
124-305
               

               
Cow position:
               
chr5:44734686-44734506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
48, 105
               

               
Conread position:
               
124-305
               

               
Cow position:
               
chr5:56860486-56860664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
103, 36
               

               
Conread position:
               
124-306
               

               
Cow position:
               
chr5:44722473-44722291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
85, 105
               

               
Conread position:
               
124-310
               

               
Cow position:
               
chr5:46063536-46063719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
53, 137
               

               
Conread position:
               
124-310
               

               
Cow position:
               
chr5:62995996-62996185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
30, 21
               

               
Conread position:
               
124-321
               

               
Cow position:
               
chr5:44810200-44810000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
124-323
               

               
Cow position:
               
chr5:12562721-12562520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 81
               

               
Conread position:
               
124-323
               

               
Cow position:
               
chr5:29599508-29599315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
11, 106
               

               
Conread position:
               
124-325
               

               
Cow position:
               
chr5:13270978-13270772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
50, 21
               

               
Conread position:
               
124-326
               

               
Cow position:
               
chr5:29172026-29172233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
124-327
               

               
Cow position:
               
chr5:34288211-34288011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
50, 25
               

               
Conread position:
               
124-328
               

               
Cow position:
               
chr5:1694049-1693848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
50, 107
               

               
Conread position:
               
124-329
               

               
Cow position:
               
chr5:35190149-35190351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
49, 105
               

               
Conread position:
               
124-331
               

               
Cow position:
               
chr5:19079291-19079489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
50, 62
               

               
Conread position:
               
124-331
               

               
Cow position:
               
chr5:71445429-71445639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
124-345
               

               
Cow position:
               
chr5:20126942-20127168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
31, 107
               

               
Conread position:
               
124-346
               

               
Cow position:
               
chr5:1766260-1766036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
71, 111
               

               
Conread position:
               
124-349
               

               
Cow position:
               
chr5:49821467-49821699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
125-325
               

               
Cow position:
               
chr5:58487416-58487615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
16, 35
               

               
Conread position:
               
125-328
               

               
Cow position:
               
chr5:15991599-15991401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
47, 81
               

               
Conread position:
               
125-337
               

               
Cow position:
               
chr5:4864583-4864792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
48, 79
               

               
Conread position:
               
126-340
               

               
Cow position:
               
chr5:35394392-35394182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
48, 94
               

               
Conread position:
               
127-309
               

               
Cow position:
               
chr5:6876926-6876740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
46, 32
               

               
Conread position:
               
127-312
               

               
Cow position:
               
chr5:11303152-11303332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
175, 33
               

               
Conread position:
               
127-331
               

               
Cow position:
               
chr5:46421628-46421845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
127-333
               

               
Cow position:
               
chr5:48062075-48061856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
127-335
               

               
Cow position:
               
chr5:19294484-19294268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
127-339
               

               
Cow position:
               
chr5:39815459-39815244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
47, 62
               

               
Conread position:
               
127-349
               

               
Cow position:
               
chr5:40122568-40122342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
128-329
               

               
Cow position:
               
chr5:54340808-54341011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
23, 157
               

               
Conread position:
               
130-267
               

               
Cow position:
               
chr5:60126735-60126879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
130-298
               

               
Cow position:
               
chr5:30035112-30035283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
130-306
               

               
Cow position:
               
chr5:41884964-41885136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
45, 59
               

               
Conread position:
               
130-311
               

               
Cow position:
               
chr5:74887855-74887672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
130-315
               

               
Cow position:
               
chr5:7676110-7675927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
44, 96
               

               
Conread position:
               
130-320
               

               
Cow position:
               
chr5:59335815-59336009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
130-323
               

               
Cow position:
               
chr5:16185423-16185617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
45, 185
               

               
Conread position:
               
130-325
               

               
Cow position:
               
chr5:44196884-44196691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
44, 105
               

               
Conread position:
               
130-343
               

               
Cow position:
               
chr5:54750852-54751070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
43, 108
               

               
Conread position:
               
130-351
               

               
Cow position:
               
chr5:51012044-51012271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
47, 78
               

               
Conread position:
               
131-310
               

               
Cow position:
               
chr5:57302811-57302999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
131-317
               

               
Cow position:
               
chr5:57087017-57086830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 183
               

               
Conread position:
               
131-322
               

               
Cow position:
               
chr5:30221732-30221539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
43, 73
               

               
Conread position:
               
131-327
               

               
Cow position:
               
chr5:61580326-61580523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
10, 91
               

               
Conread position:
               
131-333
               

               
Cow position:
               
chr5:54404808-54404611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
80, 134
               

               
Conread position:
               
131-349
               

               
Cow position:
               
chr5:52207589-52207811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
46, 69
               

               
Conread position:
               
131-350
               

               
Cow position:
               
chr5:31527349-31527130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
43, 153
               

               
Conread position:
               
132-312
               

               
Cow position:
               
chr5:19052746-19052561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 116
               

               
Conread position:
               
132-333
               

               
Cow position:
               
chr5:64843924-64843715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
132-347
               

               
Cow position:
               
chr5:38683550-38683764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
41, 175
               

               
Conread position:
               
133-305
               

               
Cow position:
               
chr5:40531490-40531311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
133-327
               

               
Cow position:
               
chr5:34347686-34347489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
41, 31
               

               
Conread position:
               
133-328
               

               
Cow position:
               
chr5:62011731-62011932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
133-345
               

               
Cow position:
               
chr5:57556077-57556295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
134-306
               

               
Cow position:
               
chr5:4824197-4824375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
135-310
               

               
Cow position:
               
chr5:29895221-29895397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
40, 92
               

               
Conread position:
               
136-311
               

               
Cow position:
               
chr5:52029458-52029632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 36
               

               
Conread position:
               
136-329
               

               
Cow position:
               
chr5:60207759-60207950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
38, 82
               

               
Conread position:
               
136-351
               

               
Cow position:
               
chr5:29060887-29060672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
25, 83
               

               
Conread position:
               
137-290
               

               
Cow position:
               
chr5:65745713-65745562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
35, 63
               

               
Conread position:
               
137-311
               

               
Cow position:
               
chr5:37253481-37253650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
37, 76
               

               
Conread position:
               
137-312
               

               
Cow position:
               
chr5:34918398-34918571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
37, 89
               

               
Conread position:
               
137-329
               

               
Cow position:
               
chr5:67950734-67950539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
37, 67
               

               
Conread position:
               
137-336
               

               
Cow position:
               
chr5:35235635-35235434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
37, 6
               

               
Conread position:
               
137-346
               

               
Cow position:
               
chr5:58401621-58401827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
35, 92
               

               
Conread position:
               
138-320
               

               
Cow position:
               
chr5:52192376-52192202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
39, 91
               

               
Conread position:
               
138-323
               

               
Cow position:
               
chr5:49207274-49207091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
36, 91
               

               
Conread position:
               
138-331
               

               
Cow position:
               
chr5:60100523-60100710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
36, 61
               

               
Conread position:
               
138-331
               

               
Cow position:
               
chr5:60153828-60154015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
36, 61
               

               
Conread position:
               
139-305
               

               
Cow position:
               
chr5:74065463-74065299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
35, 89
               

               
Conread position:
               
139-309
               

               
Cow position:
               
chr5:38420655-38420833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
33, 20
               

               
Conread position:
               
140-311
               

               
Cow position:
               
chr5:57687528-57687353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
140-322
               

               
Cow position:
               
chr5:52849140-52849321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
37, 93
               

               
Conread position:
               
140-344
               

               
Cow position:
               
chr5:30492739-30492531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 80
               

               
Conread position:
               
141-294
               

               
Cow position:
               
chr5:56753989-56754142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
33, 85
               

               
Conread position:
               
141-310
               

               
Cow position:
               
chr5:5016481-5016649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
33, 88
               

               
Conread position:
               
141-310
               

               
Cow position:
               
chr5:43846329-43846152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
24, 133
               

               
Conread position:
               
141-322
               

               
Cow position:
               
chr5:6245606-6245426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
33, 7
               

               
Conread position:
               
141-324
               

               
Cow position:
               
chr5:17987838-17987651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
141-328
               

               
Cow position:
               
chr5:21721414-21721231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
33, 88
               

               
Conread position:
               
141-330
               

               
Cow position:
               
chr5:53175202-53175006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
31, 182
               

               
Conread position:
               
141-334
               

               
Cow position:
               
chr5:71579515-71579710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
36, 57
               

               
Conread position:
               
141-347
               

               
Cow position:
               
chr5:48819330-48819541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
71, 5
               

               
Conread position:
               
141-351
               

               
Cow position:
               
chr5:32975815-32976032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
33, 7
               

               
Conread position:
               
143-310
               

               
Cow position:
               
chr5:55749979-55749810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
34, 53
               

               
Conread position:
               
144-333
               

               
Cow position:
               
chr5:63300137-63300327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
28, 76
               

               
Conread position:
               
145-310
               

               
Cow position:
               
chr5:34787634-34787798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 84
               

               
Conread position:
               
145-331
               

               
Cow position:
               
chr5:22957470-22957650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 80
               

               
Conread position:
               
145-346
               

               
Cow position:
               
chr5:66287005-66287203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
29, 92
               

               
Conread position:
               
145-350
               

               
Cow position:
               
chr5:25462148-25462349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
29, 85
               

               
Conread position:
               
146-307
               

               
Cow position:
               
chr5:63763726-63763888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
28, 11
               

               
Conread position:
               
146-311
               

               
Cow position:
               
chr5:59662997-59662830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
146-332
               

               
Cow position:
               
chr5:29010317-29010495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
28, 75
               

               
Conread position:
               
147-329
               

               
Cow position:
               
chr5:25597894-25598076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
27, 90
               

               
Conread position:
               
149-317
               

               
Cow position:
               
chr5:63939997-63939826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
26, 13
               

               
Conread position:
               
149-320
               

               
Cow position:
               
chr5:35145393-35145569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
75, 165
               

               
Conread position:
               
149-326
               

               
Cow position:
               
chr5:5030507-5030679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
25, 15
               

               
Conread position:
               
149-329
               

               
Cow position:
               
chr5:26149098-26149280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
28, 103
               

               
Conread position:
               
149-332
               

               
Cow position:
               
chr5:4981514-4981697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
25, 78
               

               
Conread position:
               
149-340
               

               
Cow position:
               
chr5:55768339-55768528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
70, 50
               

               
Conread position:
               
149-348
               

               
Cow position:
               
chr5:67339947-67340144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
24, 80
               

               
Conread position:
               
150-310
               

               
Cow position:
               
chr5:43611763-43611925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 134
               

               
Conread position:
               
150-326
               

               
Cow position:
               
chr5:47888666-47888488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
31, 149
               

               
Conread position:
               
150-331
               

               
Cow position:
               
chr5:57447601-57447417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
150-342
               

               
Cow position:
               
chr5:56643132-56643326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
23, 77
               

               
Conread position:
               
150-343
               

               
Cow position:
               
chr5:55949614-55949419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
150-344
               

               
Cow position:
               
chr5:19561383-19561187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
24, 166
               

               
Conread position:
               
155-324
               

               
Cow position:
               
chr5:46755202-46755369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
14, 52
               

               
Conread position:
               
155-330
               

               
Cow position:
               
chr5:47960191-47960020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
19, 70
               

               
Conread position:
               
157-351
               

               
Cow position:
               
chr5:15770384-15770185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
160-326
               

               
Cow position:
               
chr5:55943641-55943476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
12, 56
               

               
Conread position:
               
160-326
               

               
Cow position:
               
chr5:59958249-59958411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 40
               

               
Conread position:
               
160-330
               

               
Cow position:
               
chr5:55783888-55783716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
14, 155
               

               
Conread position:
               
160-339
               

               
Cow position:
               
chr5:19626653-19626829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
17, 69
               

               
Conread position:
               
164-323
               

               
Cow position:
               
chr5:74690170-74690014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
48, 8
               

               
Conread position:
               
165-326
               

               
Cow position:
               
chr5:61593347-61593507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
47, 27
               

               
Conread position:
               
165-331
               

               
Cow position:
               
chr5:19811602-19811768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
8, 61
               

               
Conread position:
               
170-317
               

               
Cow position:
               
chr5:48104347-48104493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
27, 59
               

               
Conread position:
               
170-336
               

               
Cow position:
               
chr5:56563840-56563999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
171-317
               

               
Cow position:
               
chr5:14419923-14419785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
172-341
               

               
Cow position:
               
chr5:43434915-43434742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
37, 11
               

               
Conread position:
               
173-296
               

               
Cow position:
               
chr5:52778477-52778352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
173-304
               

               
Cow position:
               
chr5:64142566-64142434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
38, 103
               

               
Conread position:
               
173-309
               

               
Cow position:
               
chr5:21520352-21520225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
36, 56
               

               
Conread position:
               
173-310
               

               
Cow position:
               
chr5:34639211-34639350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 15
               

               
Conread position:
               
173-311
               

               
Cow position:
               
chr5:46479153-46479020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
39, 55
               

               
Conread position:
               
173-329
               

               
Cow position:
               
chr5:14000734-14000884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
144, 42
               

               
Conread position:
               
173-329
               

               
Cow position:
               
chr5:74049913-74050068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
36, 53
               

               
Conread position:
               
173-331
               

               
Cow position:
               
chr5:47220577-47220740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
173-333
               

               
Cow position:
               
chr5:47335117-47335274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
36, 52
               

               
Conread position:
               
173-340
               

               
Cow position:
               
chr5:4728163-4728325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
36, 55
               

               
Conread position:
               
173-342
               

               
Cow position:
               
chr5:28660319-28660489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
173-344
               

               
Cow position:
               
chr5:18578981-18579151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 56
               

               
Conread position:
               
173-346
               

               
Cow position:
               
chr5:45854586-45854763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
173-348
               

               
Cow position:
               
chr5:56624428-56624247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
173-349
               

               
Cow position:
               
chr5:75712049-75711871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
173-351
               

               
Cow position:
               
chr5:17537584-17537412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 55
               

               
Conread position:
               
176-344
               

               
Cow position:
               
chr5:3627085-3626920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
36, 23
               

               
Conread position:
               
176-351
               

               
Cow position:
               
chr5:43982408-43982584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
178-310
               

               
Cow position:
               
chr5:64061113-64061239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
35, 50
               

               
Conread position:
               
178-334
               

               
Cow position:
               
chr5:52153015-52152857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
178-339
               

               
Cow position:
               
chr5:52125301-52125141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
29, 98
               

               
Conread position:
               
178-344
               

               
Cow position:
               
chr5:25446979-25447146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
46, 137
               

               
Conread position:
               
178-347
               

               
Cow position:
               
chr5:24108966-24108791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
179-322
               

               
Cow position:
               
chr5:54712975-54712830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
179-350
               

               
Cow position:
               
chr5:24464836-24465002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
34, 78
               

               
Conread position:
               
181-329
               

               
Cow position:
               
chr5:43815720-43815571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 38
               

               
Conread position:
               
183-308
               

               
Cow position:
               
chr5:50703950-50703823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
26, 16
               

               
Conread position:
               
183-323
               

               
Cow position:
               
chr5:44582670-44582522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
29, 139
               

               
Conread position:
               
186-342
               

               
Cow position:
               
chr5:62543941-62544094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
26, 88
               

               
Conread position:
               
188-310
               

               
Cow position:
               
chr5:3492288-3492411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
24, 95
               

               
Conread position:
               
188-335
               

               
Cow position:
               
chr5:61840692-61840842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
11, 130
               

               
Conread position:
               
189-323
               

               
Cow position:
               
chr5:20736772-20736637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
22, 41
               

               
Conread position:
               
189-331
               

               
Cow position:
               
chr5:44836647-44836782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
22, 40
               

               
Conread position:
               
189-339
               

               
Cow position:
               
chr5:56428469-56428320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
23, 116
               

               
Conread position:
               
193-329
               

               
Cow position:
               
chr5:8149197-8149066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
193-334
               

               
Cow position:
               
chr5:62183025-62183169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
21, 123
               

               
Conread position:
               
193-346
               

               
Cow position:
               
chr5:34419780-34419628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
54, 19
               

               
Conread position:
               
193-349
               

               
Cow position:
               
chr5:32672726-32672566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
194-317
               

               
Cow position:
               
chr5:63940338-63940222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 34
               

               
Conread position:
               
194-322
               

               
Cow position:
               
chr5:20407365-20407238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
35, 119
               

               
Conread position:
               
194-327
               

               
Cow position:
               
chr5:21237781-21237649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
18, 25
               

               
Conread position:
               
194-335
               

               
Cow position:
               
chr5:74008267-74008118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
198-337
               

               
Cow position:
               
chr5:42928499-42928356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
200-323
               

               
Cow position:
               
chr5:55414323-55414199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
9, 29
               

               
Conread position:
               
208-329
               

               
Cow position:
               
chr5:70948222-70948100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
22, 52
               

               
Conread position:
               
208-329
               

               
Cow position:
               
chr5:72160210-72160327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
209-328
               

               
Cow position:
               
chr5:56959309-56959426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
104, 19
               

               
Conread position:
               
214-335
               

               
Cow position:
               
chr5:29831387-29831268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
218-332
               

               
Cow position:
               
chr5:35725529-35725414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
7, 96
               

               
Conread position:
               
231-329
               

               
Cow position:
               
chr5:9859230-9859132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
233-335
               

               
Cow position:
               
chr5:73536759-73536861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.