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Cow genome map

           
Conread name:
           
recc2818c_g18.y1
        

               
Conread position:
               
4-225
               

               
Cow position:
               
chr6:54991070-54990845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
26, 85
               

               
Conread position:
               
4-284
               

               
Cow position:
               
chr6:20098031-20097744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
26, 126
               

               
Conread position:
               
4-307
               

               
Cow position:
               
chr6:49437277-49437567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
168, 26
               

               
Conread position:
               
4-322
               

               
Cow position:
               
chr6:44194609-44194305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 42
               

               
Conread position:
               
4-331
               

               
Cow position:
               
chr6:35181324-35180991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
30, 14
               

               
Conread position:
               
4-334
               

               
Cow position:
               
chr6:21231464-21231773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 69
               

               
Conread position:
               
5-151
               

               
Cow position:
               
chr6:21542254-21542403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 129
               

               
Conread position:
               
5-197
               

               
Cow position:
               
chr6:23248025-23247839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
167, 109
               

               
Conread position:
               
5-197
               

               
Cow position:
               
chr6:61608445-61608639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
25, 70
               

               
Conread position:
               
5-209
               

               
Cow position:
               
chr6:56843089-56843293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 124
               

               
Conread position:
               
5-211
               

               
Cow position:
               
chr6:20929582-20929373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
25, 72
               

               
Conread position:
               
5-216
               

               
Cow position:
               
chr6:37634718-37634942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
5-225
               

               
Cow position:
               
chr6:19681588-19681369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
43, 38
               

               
Conread position:
               
5-225
               

               
Cow position:
               
chr6:28977101-28976884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
79, 9
               

               
Conread position:
               
5-230
               

               
Cow position:
               
chr6:9452835-9452610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
25, 86
               

               
Conread position:
               
5-234
               

               
Cow position:
               
chr6:1422426-1422652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
40, 10
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr6:21869714-21869478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 79
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr6:50975992-50976223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
167, 21
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr6:58597570-58597333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
39, 124
               

               
Conread position:
               
5-244
               

               
Cow position:
               
chr6:8209657-8209430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
169, 23
               

               
Conread position:
               
5-259
               

               
Cow position:
               
chr6:37332041-37332310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
36, 51
               

               
Conread position:
               
5-282
               

               
Cow position:
               
chr6:61168709-61168976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
169, 51
               

               
Conread position:
               
5-287
               

               
Cow position:
               
chr6:8125265-8125545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
161, 75
               

               
Conread position:
               
5-290
               

               
Cow position:
               
chr6:35990299-35990020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
29, 81
               

               
Conread position:
               
5-294
               

               
Cow position:
               
chr6:15305515-15305794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 68
               

               
Conread position:
               
5-294
               

               
Cow position:
               
chr6:54132751-54133034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 99
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr6:17794821-17794522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
167, 65
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr6:39358411-39358110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 80
               

               
Conread position:
               
5-306
               

               
Cow position:
               
chr6:36196148-36196437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 79
               

               
Conread position:
               
5-308
               

               
Cow position:
               
chr6:46173318-46173021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
41, 26
               

               
Conread position:
               
5-310
               

               
Cow position:
               
chr6:12669039-12669337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
26, 72
               

               
Conread position:
               
5-310
               

               
Cow position:
               
chr6:47355758-47356065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
41, 125
               

               
Conread position:
               
5-310
               

               
Cow position:
               
chr6:49421849-49421557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
167, 66
               

               
Conread position:
               
5-310
               

               
Cow position:
               
chr6:53024861-53024572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
169, 26
               

               
Conread position:
               
5-311
               

               
Cow position:
               
chr6:53841565-53841263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
16, 68
               

               
Conread position:
               
5-312
               

               
Cow position:
               
chr6:43345509-43345197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
25, 90
               

               
Conread position:
               
5-312
               

               
Cow position:
               
chr6:55282353-55282051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 72
               

               
Conread position:
               
5-313
               

               
Cow position:
               
chr6:46283066-46282750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
76, 35
               

               
Conread position:
               
5-315
               

               
Cow position:
               
chr6:13367225-13367528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
59, 29
               

               
Conread position:
               
5-317
               

               
Cow position:
               
chr6:23532598-23532892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
59, 17
               

               
Conread position:
               
5-318
               

               
Cow position:
               
chr6:32125998-32126298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
26, 63
               

               
Conread position:
               
5-321
               

               
Cow position:
               
chr6:19996553-19996866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
26, 63
               

               
Conread position:
               
5-322
               

               
Cow position:
               
chr6:8599939-8600255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
46, 77
               

               
Conread position:
               
5-322
               

               
Cow position:
               
chr6:46860230-46859920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
15, 79
               

               
Conread position:
               
5-322
               

               
Cow position:
               
chr6:58370688-58370999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
25, 123
               

               
Conread position:
               
5-323
               

               
Cow position:
               
chr6:14166766-14166439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
120, 57
               

               
Conread position:
               
5-324
               

               
Cow position:
               
chr6:16103260-16102936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
22, 72
               

               
Conread position:
               
5-324
               

               
Cow position:
               
chr6:24110221-24110541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
169, 29
               

               
Conread position:
               
5-324
               

               
Cow position:
               
chr6:26728591-26728290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
17, 71
               

               
Conread position:
               
5-324
               

               
Cow position:
               
chr6:31847286-31846990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
207, 75
               

               
Conread position:
               
5-324
               

               
Cow position:
               
chr6:51581319-51581003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
25, 49
               

               
Conread position:
               
5-325
               

               
Cow position:
               
chr6:2547180-2547515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
25, 135
               

               
Conread position:
               
5-325
               

               
Cow position:
               
chr6:15300884-15300586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
169, 26
               

               
Conread position:
               
5-325
               

               
Cow position:
               
chr6:27888285-27888600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
17, 57
               

               
Conread position:
               
5-327
               

               
Cow position:
               
chr6:13040391-13040710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
167, 66
               

               
Conread position:
               
5-327
               

               
Cow position:
               
chr6:21456754-21456421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
26, 92
               

               
Conread position:
               
5-329
               

               
Cow position:
               
chr6:21004608-21004939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
50, 126
               

               
Conread position:
               
5-329
               

               
Cow position:
               
chr6:32121845-32122152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
5-331
               

               
Cow position:
               
chr6:35726030-35726350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
26, 74
               

               
Conread position:
               
5-332
               

               
Cow position:
               
chr6:36202762-36203085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 23
               

               
Conread position:
               
5-332
               

               
Cow position:
               
chr6:47305274-47305597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
24, 127
               

               
Conread position:
               
5-333
               

               
Cow position:
               
chr6:31535633-31535308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
16, 78
               

               
Conread position:
               
5-334
               

               
Cow position:
               
chr6:19446193-19446520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
160, 67
               

               
Conread position:
               
5-336
               

               
Cow position:
               
chr6:5609506-5609177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 75
               

               
Conread position:
               
5-339
               

               
Cow position:
               
chr6:50504391-50504724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 125
               

               
Conread position:
               
5-340
               

               
Cow position:
               
chr6:6063356-6063023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
39, 56
               

               
Conread position:
               
5-341
               

               
Cow position:
               
chr6:40032127-40032453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
39, 78
               

               
Conread position:
               
5-343
               

               
Cow position:
               
chr6:5330349-5330682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
21, 77
               

               
Conread position:
               
5-345
               

               
Cow position:
               
chr6:3952452-3952794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
39, 121
               

               
Conread position:
               
5-347
               

               
Cow position:
               
chr6:48281933-48282275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
170, 32
               

               
Conread position:
               
5-349
               

               
Cow position:
               
chr6:9736710-9736368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
168, 64
               

               
Conread position:
               
5-350
               

               
Cow position:
               
chr6:38609903-38610253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
39, 98
               

               
Conread position:
               
5-351
               

               
Cow position:
               
chr6:694213-693865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 67
               

               
Conread position:
               
6-272
               

               
Cow position:
               
chr6:2153657-2153395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
168, 75
               

               
Conread position:
               
6-325
               

               
Cow position:
               
chr6:51539142-51538815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
122, 58
               

               
Conread position:
               
6-329
               

               
Cow position:
               
chr6:32867276-32866963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 39
               

               
Conread position:
               
7-276
               

               
Cow position:
               
chr6:61524265-61523999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
166, 65
               

               
Conread position:
               
7-326
               

               
Cow position:
               
chr6:50090582-50090900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
75, 56
               

               
Conread position:
               
7-327
               

               
Cow position:
               
chr6:6965455-6965139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 29
               

               
Conread position:
               
7-330
               

               
Cow position:
               
chr6:63251985-63251665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
37, 76
               

               
Conread position:
               
7-338
               

               
Cow position:
               
chr6:17704758-17705106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
7-347
               

               
Cow position:
               
chr6:54854186-54854526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
124, 33
               

               
Conread position:
               
8-323
               

               
Cow position:
               
chr6:22850307-22849999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
166, 61
               

               
Conread position:
               
10-287
               

               
Cow position:
               
chr6:36921032-36920759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
6, 28
               

               
Conread position:
               
10-312
               

               
Cow position:
               
chr6:611495-611784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
144, 42
               

               
Conread position:
               
13-244
               

               
Cow position:
               
chr6:19131378-19131604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
161, 21
               

               
Conread position:
               
13-294
               

               
Cow position:
               
chr6:60516776-60517061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
160, 9
               

               
Conread position:
               
15-294
               

               
Cow position:
               
chr6:7119670-7119407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
157, 65
               

               
Conread position:
               
16-331
               

               
Cow position:
               
chr6:55417576-55417276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
156, 57
               

               
Conread position:
               
17-162
               

               
Cow position:
               
chr6:24962094-24962236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
17-210
               

               
Cow position:
               
chr6:35613472-35613277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
106, 54
               

               
Conread position:
               
17-326
               

               
Cow position:
               
chr6:7130938-7130605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
111, 53
               

               
Conread position:
               
19-308
               

               
Cow position:
               
chr6:67950906-67951194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
153, 109
               

               
Conread position:
               
19-321
               

               
Cow position:
               
chr6:323348-323052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
155, 40
               

               
Conread position:
               
21-166
               

               
Cow position:
               
chr6:36493593-36493446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
94, 138
               

               
Conread position:
               
21-306
               

               
Cow position:
               
chr6:24781600-24781316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
17, 54
               

               
Conread position:
               
21-309
               

               
Cow position:
               
chr6:44867584-44867309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
153, 52
               

               
Conread position:
               
21-311
               

               
Cow position:
               
chr6:53460616-53460331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
53, 48
               

               
Conread position:
               
21-321
               

               
Cow position:
               
chr6:67451416-67451122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 16
               

               
Conread position:
               
21-331
               

               
Cow position:
               
chr6:44566373-44566687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
85, 44
               

               
Conread position:
               
22-166
               

               
Cow position:
               
chr6:1944669-1944808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
22-196
               

               
Cow position:
               
chr6:15022591-15022421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
150, 50
               

               
Conread position:
               
22-197
               

               
Cow position:
               
chr6:899333-899166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
150, 48
               

               
Conread position:
               
22-210
               

               
Cow position:
               
chr6:4864591-4864407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
150, 49
               

               
Conread position:
               
22-215
               

               
Cow position:
               
chr6:16423657-16423847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
187, 14
               

               
Conread position:
               
22-216
               

               
Cow position:
               
chr6:47640476-47640286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
150, 47
               

               
Conread position:
               
22-222
               

               
Cow position:
               
chr6:66874307-66874501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
150, 49
               

               
Conread position:
               
22-225
               

               
Cow position:
               
chr6:52901191-52901394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
149, 105
               

               
Conread position:
               
22-227
               

               
Cow position:
               
chr6:11169655-11169860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
133, 49
               

               
Conread position:
               
22-230
               

               
Cow position:
               
chr6:42565646-42565848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
151, 51
               

               
Conread position:
               
22-233
               

               
Cow position:
               
chr6:66375373-66375169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
150, 46
               

               
Conread position:
               
22-238
               

               
Cow position:
               
chr6:14958388-14958172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
85, 107
               

               
Conread position:
               
22-242
               

               
Cow position:
               
chr6:54867471-54867691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
150, 91
               

               
Conread position:
               
22-244
               

               
Cow position:
               
chr6:23466072-23465859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
150, 46
               

               
Conread position:
               
22-244
               

               
Cow position:
               
chr6:66531864-66531648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
152, 27
               

               
Conread position:
               
22-257
               

               
Cow position:
               
chr6:48112155-48112382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
150, 43
               

               
Conread position:
               
22-261
               

               
Cow position:
               
chr6:68652396-68652162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
150, 49
               

               
Conread position:
               
22-272
               

               
Cow position:
               
chr6:8637232-8637478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
45, 59
               

               
Conread position:
               
22-273
               

               
Cow position:
               
chr6:47799249-47799495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
152, 58
               

               
Conread position:
               
22-276
               

               
Cow position:
               
chr6:31078915-31078663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
102, 42
               

               
Conread position:
               
22-281
               

               
Cow position:
               
chr6:26915287-26915538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
38, 58
               

               
Conread position:
               
22-285
               

               
Cow position:
               
chr6:67187639-67187895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
76, 60
               

               
Conread position:
               
22-286
               

               
Cow position:
               
chr6:68816123-68816386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 59
               

               
Conread position:
               
22-287
               

               
Cow position:
               
chr6:38641451-38641710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
150, 100
               

               
Conread position:
               
22-288
               

               
Cow position:
               
chr6:445278-445545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
150, 59
               

               
Conread position:
               
22-288
               

               
Cow position:
               
chr6:21736931-21736685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
22-290
               

               
Cow position:
               
chr6:35842612-35842879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
33, 94
               

               
Conread position:
               
22-290
               

               
Cow position:
               
chr6:52412818-52413081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
152, 57
               

               
Conread position:
               
22-291
               

               
Cow position:
               
chr6:4692022-4691745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
61, 107
               

               
Conread position:
               
22-291
               

               
Cow position:
               
chr6:9718963-9718697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
56, 102
               

               
Conread position:
               
22-291
               

               
Cow position:
               
chr6:39093693-39093965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
38, 113
               

               
Conread position:
               
22-294
               

               
Cow position:
               
chr6:41733584-41733858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
106, 33
               

               
Conread position:
               
22-294
               

               
Cow position:
               
chr6:51835355-51835621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
150, 60
               

               
Conread position:
               
22-294
               

               
Cow position:
               
chr6:63720152-63720415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 62
               

               
Conread position:
               
22-298
               

               
Cow position:
               
chr6:12092036-12091759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
149, 38
               

               
Conread position:
               
22-299
               

               
Cow position:
               
chr6:38207534-38207258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
152, 32
               

               
Conread position:
               
22-299
               

               
Cow position:
               
chr6:41375727-41375998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
51, 65
               

               
Conread position:
               
22-304
               

               
Cow position:
               
chr6:12337946-12338223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
50, 107
               

               
Conread position:
               
22-305
               

               
Cow position:
               
chr6:49398657-49398395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
155, 48
               

               
Conread position:
               
22-306
               

               
Cow position:
               
chr6:22985901-22985627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
45, 60
               

               
Conread position:
               
22-306
               

               
Cow position:
               
chr6:32268919-32268652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
152, 37
               

               
Conread position:
               
22-306
               

               
Cow position:
               
chr6:35435949-35436222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
152, 59
               

               
Conread position:
               
22-306
               

               
Cow position:
               
chr6:57405166-57404901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
22-306
               

               
Cow position:
               
chr6:60118107-60118377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
22-308
               

               
Cow position:
               
chr6:9302758-9302486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
152, 46
               

               
Conread position:
               
22-308
               

               
Cow position:
               
chr6:46465780-46466055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 57
               

               
Conread position:
               
22-309
               

               
Cow position:
               
chr6:54490778-54490508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chr6:143412-143139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
153, 12
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chr6:8966048-8966327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
56, 88
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chr6:15242789-15243078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 63
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chr6:18118095-18117809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 62
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chr6:18447552-18447276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chr6:24536585-24536287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
49, 113
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chr6:33206698-33206968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
28, 49
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chr6:38441133-38441419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
22-311
               

               
Cow position:
               
chr6:6400908-6401205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
150, 105
               

               
Conread position:
               
22-311
               

               
Cow position:
               
chr6:28148209-28148504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
155, 57
               

               
Conread position:
               
22-312
               

               
Cow position:
               
chr6:17068692-17068414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
22-312
               

               
Cow position:
               
chr6:32287595-32287872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 50
               

               
Conread position:
               
22-312
               

               
Cow position:
               
chr6:68272538-68272844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
44, 9
               

               
Conread position:
               
22-314
               

               
Cow position:
               
chr6:37149145-37149427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
22-314
               

               
Cow position:
               
chr6:65870987-65871275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 110
               

               
Conread position:
               
22-317
               

               
Cow position:
               
chr6:120202-120483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 61
               

               
Conread position:
               
22-317
               

               
Cow position:
               
chr6:4383443-4383721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
155, 47
               

               
Conread position:
               
22-317
               

               
Cow position:
               
chr6:53651999-53652287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
150, 42
               

               
Conread position:
               
22-319
               

               
Cow position:
               
chr6:11246720-11247015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
147, 106
               

               
Conread position:
               
22-322
               

               
Cow position:
               
chr6:56849969-56850268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
51, 111
               

               
Conread position:
               
22-323
               

               
Cow position:
               
chr6:4468725-4469021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
155, 42
               

               
Conread position:
               
22-323
               

               
Cow position:
               
chr6:14914284-14913979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
43, 95
               

               
Conread position:
               
22-323
               

               
Cow position:
               
chr6:24339240-24339538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
137, 21
               

               
Conread position:
               
22-324
               

               
Cow position:
               
chr6:17549024-17548713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 110
               

               
Conread position:
               
22-324
               

               
Cow position:
               
chr6:24468434-24468146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
22-324
               

               
Cow position:
               
chr6:47574863-47575145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 51
               

               
Conread position:
               
22-324
               

               
Cow position:
               
chr6:50984183-50984473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
149, 19
               

               
Conread position:
               
22-324
               

               
Cow position:
               
chr6:60144242-60143945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 69
               

               
Conread position:
               
22-324
               

               
Cow position:
               
chr6:62437371-62437670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
152, 33
               

               
Conread position:
               
22-325
               

               
Cow position:
               
chr6:2078863-2078562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 110
               

               
Conread position:
               
22-325
               

               
Cow position:
               
chr6:6098326-6097994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
22-325
               

               
Cow position:
               
chr6:15243211-15243515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 59
               

               
Conread position:
               
22-325
               

               
Cow position:
               
chr6:17997357-17997063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
152, 18
               

               
Conread position:
               
22-325
               

               
Cow position:
               
chr6:19045583-19045884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
155, 44
               

               
Conread position:
               
22-325
               

               
Cow position:
               
chr6:21061930-21061635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
49, 109
               

               
Conread position:
               
22-325
               

               
Cow position:
               
chr6:23695951-23696248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 109
               

               
Conread position:
               
22-325
               

               
Cow position:
               
chr6:48468961-48469261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
152, 22
               

               
Conread position:
               
22-325
               

               
Cow position:
               
chr6:61269267-61269575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 59
               

               
Conread position:
               
22-326
               

               
Cow position:
               
chr6:38640188-38640489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 61
               

               
Conread position:
               
22-327
               

               
Cow position:
               
chr6:12964810-12965107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
152, 12
               

               
Conread position:
               
22-327
               

               
Cow position:
               
chr6:19264539-19264245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 47
               

               
Conread position:
               
22-327
               

               
Cow position:
               
chr6:40050026-40050331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
103, 48
               

               
Conread position:
               
22-327
               

               
Cow position:
               
chr6:54208180-54207871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
150, 60
               

               
Conread position:
               
22-327
               

               
Cow position:
               
chr6:59603254-59602959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 106
               

               
Conread position:
               
22-328
               

               
Cow position:
               
chr6:13565041-13565340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
42, 107
               

               
Conread position:
               
22-328
               

               
Cow position:
               
chr6:60274055-60273755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 32
               

               
Conread position:
               
22-329
               

               
Cow position:
               
chr6:17313691-17313996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
191, 30
               

               
Conread position:
               
22-329
               

               
Cow position:
               
chr6:52478457-52478150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 101
               

               
Conread position:
               
22-330
               

               
Cow position:
               
chr6:3350976-3351289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
56, 107
               

               
Conread position:
               
22-330
               

               
Cow position:
               
chr6:16266679-16266988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
150, 41
               

               
Conread position:
               
22-331
               

               
Cow position:
               
chr6:13687856-13687558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 30
               

               
Conread position:
               
22-331
               

               
Cow position:
               
chr6:28973078-28972772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
150, 49
               

               
Conread position:
               
22-331
               

               
Cow position:
               
chr6:68376368-68376054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 107
               

               
Conread position:
               
22-332
               

               
Cow position:
               
chr6:33509747-33510050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
77, 48
               

               
Conread position:
               
22-333
               

               
Cow position:
               
chr6:3464246-3464550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
44, 112
               

               
Conread position:
               
22-334
               

               
Cow position:
               
chr6:17414492-17414186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 43
               

               
Conread position:
               
22-334
               

               
Cow position:
               
chr6:62669826-62670134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
152, 12
               

               
Conread position:
               
22-335
               

               
Cow position:
               
chr6:30123234-30122906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 58
               

               
Conread position:
               
22-335
               

               
Cow position:
               
chr6:37395451-37395141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
49, 111
               

               
Conread position:
               
22-335
               

               
Cow position:
               
chr6:61631651-61631345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
126, 61
               

               
Conread position:
               
22-336
               

               
Cow position:
               
chr6:5095590-5095277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
101, 57
               

               
Conread position:
               
22-336
               

               
Cow position:
               
chr6:38771243-38771536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
151, 51
               

               
Conread position:
               
22-336
               

               
Cow position:
               
chr6:60468194-60468497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
156, 49
               

               
Conread position:
               
22-337
               

               
Cow position:
               
chr6:9219230-9219530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
186, 47
               

               
Conread position:
               
22-338
               

               
Cow position:
               
chr6:60783826-60784143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
150, 60
               

               
Conread position:
               
22-339
               

               
Cow position:
               
chr6:7539532-7539845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
15, 43
               

               
Conread position:
               
22-339
               

               
Cow position:
               
chr6:23353510-23353826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
22-339
               

               
Cow position:
               
chr6:23402033-23401727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
150, 51
               

               
Conread position:
               
22-340
               

               
Cow position:
               
chr6:19755119-19754810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
193, 58
               

               
Conread position:
               
22-340
               

               
Cow position:
               
chr6:46558011-46558324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
55, 33
               

               
Conread position:
               
22-341
               

               
Cow position:
               
chr6:64431892-64432204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
19, 23
               

               
Conread position:
               
22-342
               

               
Cow position:
               
chr6:53932890-53932574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
106, 51
               

               
Conread position:
               
22-343
               

               
Cow position:
               
chr6:19292756-19293071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
73, 18
               

               
Conread position:
               
22-345
               

               
Cow position:
               
chr6:20157288-20157612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
158, 41
               

               
Conread position:
               
22-345
               

               
Cow position:
               
chr6:50577481-50577789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
47, 68
               

               
Conread position:
               
22-347
               

               
Cow position:
               
chr6:7128449-7128129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 51
               

               
Conread position:
               
22-347
               

               
Cow position:
               
chr6:23025156-23024822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
44, 188
               

               
Conread position:
               
22-347
               

               
Cow position:
               
chr6:51526449-51526768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
22-351
               

               
Cow position:
               
chr6:8562677-8562994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
152, 59
               

               
Conread position:
               
22-351
               

               
Cow position:
               
chr6:60739973-60740298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
22-351
               

               
Cow position:
               
chr6:67281854-67282171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
152, 38
               

               
Conread position:
               
23-268
               

               
Cow position:
               
chr6:57571436-57571675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
149, 50
               

               
Conread position:
               
23-282
               

               
Cow position:
               
chr6:27851749-27851497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
105, 64
               

               
Conread position:
               
23-310
               

               
Cow position:
               
chr6:57546262-57545990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
151, 37
               

               
Conread position:
               
23-314
               

               
Cow position:
               
chr6:8161734-8161442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
109, 46
               

               
Conread position:
               
23-325
               

               
Cow position:
               
chr6:7190161-7189876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
149, 57
               

               
Conread position:
               
23-327
               

               
Cow position:
               
chr6:7801436-7801143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
151, 64
               

               
Conread position:
               
23-350
               

               
Cow position:
               
chr6:10176338-10176016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
149, 59
               

               
Conread position:
               
24-281
               

               
Cow position:
               
chr6:67643732-67643479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
151, 46
               

               
Conread position:
               
24-317
               

               
Cow position:
               
chr6:10106024-10105738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 59
               

               
Conread position:
               
24-317
               

               
Cow position:
               
chr6:44078476-44078761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
150, 48
               

               
Conread position:
               
24-328
               

               
Cow position:
               
chr6:56986686-56986390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
150, 54
               

               
Conread position:
               
24-330
               

               
Cow position:
               
chr6:18955106-18954833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
188, 51
               

               
Conread position:
               
24-333
               

               
Cow position:
               
chr6:47520009-47520315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 60
               

               
Conread position:
               
24-337
               

               
Cow position:
               
chr6:54365371-54365062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
150, 49
               

               
Conread position:
               
24-341
               

               
Cow position:
               
chr6:6060608-6060305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
150, 32
               

               
Conread position:
               
26-224
               

               
Cow position:
               
chr6:32517139-32516955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
146, 47
               

               
Conread position:
               
26-350
               

               
Cow position:
               
chr6:25615143-25614810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 104
               

               
Conread position:
               
27-306
               

               
Cow position:
               
chr6:38853693-38853421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
150, 43
               

               
Conread position:
               
27-323
               

               
Cow position:
               
chr6:66570399-66570678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
147, 95
               

               
Conread position:
               
28-294
               

               
Cow position:
               
chr6:2584904-2585164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
146, 52
               

               
Conread position:
               
28-310
               

               
Cow position:
               
chr6:67728333-67728617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 102
               

               
Conread position:
               
29-250
               

               
Cow position:
               
chr6:2899607-2899384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
52, 19
               

               
Conread position:
               
30-223
               

               
Cow position:
               
chr6:59770192-59770376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
30-244
               

               
Cow position:
               
chr6:222485-222281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
142, 28
               

               
Conread position:
               
30-294
               

               
Cow position:
               
chr6:34119390-34119140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
32, 57
               

               
Conread position:
               
32-216
               

               
Cow position:
               
chr6:32853153-32853334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
140, 32
               

               
Conread position:
               
32-284
               

               
Cow position:
               
chr6:45690636-45690402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
140, 20
               

               
Conread position:
               
32-308
               

               
Cow position:
               
chr6:60266215-60265931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
139, 48
               

               
Conread position:
               
32-317
               

               
Cow position:
               
chr6:3329954-3330242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
100, 52
               

               
Conread position:
               
32-318
               

               
Cow position:
               
chr6:8094324-8094039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
54, 41
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr6:56393739-56394024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
100, 41
               

               
Conread position:
               
33-222
               

               
Cow position:
               
chr6:19259377-19259189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
33, 49
               

               
Conread position:
               
34-331
               

               
Cow position:
               
chr6:6201397-6201697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
140, 47
               

               
Conread position:
               
35-347
               

               
Cow position:
               
chr6:69334342-69334040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
137, 46
               

               
Conread position:
               
36-323
               

               
Cow position:
               
chr6:67451675-67451411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
28, 13
               

               
Conread position:
               
37-205
               

               
Cow position:
               
chr6:54083019-54082854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
137, 43
               

               
Conread position:
               
39-308
               

               
Cow position:
               
chr6:41015003-41014737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
136, 34
               

               
Conread position:
               
39-324
               

               
Cow position:
               
chr6:63065798-63066090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 42
               

               
Conread position:
               
40-306
               

               
Cow position:
               
chr6:18904078-18903802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
134, 62
               

               
Conread position:
               
40-324
               

               
Cow position:
               
chr6:48097627-48097350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 24
               

               
Conread position:
               
40-331
               

               
Cow position:
               
chr6:32453361-32453650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
134, 33
               

               
Conread position:
               
40-331
               

               
Cow position:
               
chr6:68685529-68685802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
132, 33
               

               
Conread position:
               
40-333
               

               
Cow position:
               
chr6:62056587-62056873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 41
               

               
Conread position:
               
46-309
               

               
Cow position:
               
chr6:58725356-58725605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
131, 24
               

               
Conread position:
               
48-232
               

               
Cow position:
               
chr6:53089990-53090172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
126, 24
               

               
Conread position:
               
48-243
               

               
Cow position:
               
chr6:4702842-4702644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
126, 33
               

               
Conread position:
               
48-326
               

               
Cow position:
               
chr6:53546018-53546283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
125, 21
               

               
Conread position:
               
48-351
               

               
Cow position:
               
chr6:21293514-21293219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 34
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr6:59301804-59301589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
123, 24
               

               
Conread position:
               
53-309
               

               
Cow position:
               
chr6:37827969-37827709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
8, 109
               

               
Conread position:
               
54-307
               

               
Cow position:
               
chr6:57089185-57089440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
74, 27
               

               
Conread position:
               
54-310
               

               
Cow position:
               
chr6:20219790-20219540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
39, 27
               

               
Conread position:
               
54-322
               

               
Cow position:
               
chr6:47540860-47540587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
77, 19
               

               
Conread position:
               
54-323
               

               
Cow position:
               
chr6:35319145-35318882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
119, 15
               

               
Conread position:
               
55-326
               

               
Cow position:
               
chr6:66978856-66979126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
155, 74
               

               
Conread position:
               
55-340
               

               
Cow position:
               
chr6:13653340-13653615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
157, 73
               

               
Conread position:
               
56-240
               

               
Cow position:
               
chr6:51463645-51463464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
118, 72
               

               
Conread position:
               
60-294
               

               
Cow position:
               
chr6:48379621-48379388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
114, 10
               

               
Conread position:
               
60-301
               

               
Cow position:
               
chr6:51121080-51120836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 13
               

               
Conread position:
               
61-350
               

               
Cow position:
               
chr6:62683362-62683654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
65, 55
               

               
Conread position:
               
62-225
               

               
Cow position:
               
chr6:54529288-54529443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
13, 67
               

               
Conread position:
               
62-312
               

               
Cow position:
               
chr6:21467273-21467029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 56
               

               
Conread position:
               
62-318
               

               
Cow position:
               
chr6:55297101-55296844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
111, 47
               

               
Conread position:
               
62-326
               

               
Cow position:
               
chr6:57079417-57079680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
112, 66
               

               
Conread position:
               
62-336
               

               
Cow position:
               
chr6:47782855-47783137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
23, 11
               

               
Conread position:
               
62-349
               

               
Cow position:
               
chr6:21475721-21476006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
112, 59
               

               
Conread position:
               
63-328
               

               
Cow position:
               
chr6:35727840-35728106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 21
               

               
Conread position:
               
65-329
               

               
Cow position:
               
chr6:67069820-67069558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
8, 48
               

               
Conread position:
               
65-338
               

               
Cow position:
               
chr6:54846278-54846010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
109, 25
               

               
Conread position:
               
66-310
               

               
Cow position:
               
chr6:5820250-5820021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
13, 58
               

               
Conread position:
               
66-331
               

               
Cow position:
               
chr6:58459720-58459975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
106, 17
               

               
Conread position:
               
66-347
               

               
Cow position:
               
chr6:12928146-12928417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
108, 15
               

               
Conread position:
               
67-351
               

               
Cow position:
               
chr6:57320585-57320318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
145, 61
               

               
Conread position:
               
69-244
               

               
Cow position:
               
chr6:6343427-6343605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
91, 53
               

               
Conread position:
               
70-331
               

               
Cow position:
               
chr6:58304416-58304670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
104, 58
               

               
Conread position:
               
71-328
               

               
Cow position:
               
chr6:26155151-26155402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
103, 57
               

               
Conread position:
               
71-328
               

               
Cow position:
               
chr6:45388328-45388576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
74, 38
               

               
Conread position:
               
71-330
               

               
Cow position:
               
chr6:8688844-8688591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
106, 57
               

               
Conread position:
               
71-331
               

               
Cow position:
               
chr6:12761283-12761541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
71-345
               

               
Cow position:
               
chr6:21715051-21715324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
60, 70
               

               
Conread position:
               
72-277
               

               
Cow position:
               
chr6:17816992-17816785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
44, 58
               

               
Conread position:
               
72-332
               

               
Cow position:
               
chr6:51530186-51529930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
50, 39
               

               
Conread position:
               
72-336
               

               
Cow position:
               
chr6:26638385-26638653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
59, 135
               

               
Conread position:
               
73-291
               

               
Cow position:
               
chr6:28483019-28483237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
10, 37
               

               
Conread position:
               
73-324
               

               
Cow position:
               
chr6:55404911-55405168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
74-333
               

               
Cow position:
               
chr6:36809201-36808940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
26, 13
               

               
Conread position:
               
75-263
               

               
Cow position:
               
chr6:6067695-6067512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
99, 47
               

               
Conread position:
               
75-309
               

               
Cow position:
               
chr6:42567490-42567734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
77-290
               

               
Cow position:
               
chr6:18599249-18599031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
54, 130
               

               
Conread position:
               
77-326
               

               
Cow position:
               
chr6:42483424-42483669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
97, 51
               

               
Conread position:
               
77-350
               

               
Cow position:
               
chr6:48435844-48436112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
97, 14
               

               
Conread position:
               
78-225
               

               
Cow position:
               
chr6:43651762-43651908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
96, 45
               

               
Conread position:
               
78-278
               

               
Cow position:
               
chr6:9832216-9832409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
94, 51
               

               
Conread position:
               
78-330
               

               
Cow position:
               
chr6:1941822-1941575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
85, 50
               

               
Conread position:
               
79-294
               

               
Cow position:
               
chr6:5114039-5113824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
6, 49
               

               
Conread position:
               
80-278
               

               
Cow position:
               
chr6:46571118-46571317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
95, 28
               

               
Conread position:
               
80-327
               

               
Cow position:
               
chr6:44636486-44636255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
132, 7
               

               
Conread position:
               
81-225
               

               
Cow position:
               
chr6:54471918-54471776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
96, 49
               

               
Conread position:
               
81-244
               

               
Cow position:
               
chr6:1002250-1002087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
91, 41
               

               
Conread position:
               
81-263
               

               
Cow position:
               
chr6:21590720-21590897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
93, 47
               

               
Conread position:
               
81-291
               

               
Cow position:
               
chr6:1871185-1870977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
93, 45
               

               
Conread position:
               
81-298
               

               
Cow position:
               
chr6:23110187-23109964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 67
               

               
Conread position:
               
81-308
               

               
Cow position:
               
chr6:61109800-61110019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
131, 50
               

               
Conread position:
               
81-310
               

               
Cow position:
               
chr6:35171618-35171853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
81-321
               

               
Cow position:
               
chr6:66839211-66839443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
93, 40
               

               
Conread position:
               
81-323
               

               
Cow position:
               
chr6:51542905-51543155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 20
               

               
Conread position:
               
81-325
               

               
Cow position:
               
chr6:48157387-48157136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
81-333
               

               
Cow position:
               
chr6:19401857-19402107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
47, 100
               

               
Conread position:
               
81-335
               

               
Cow position:
               
chr6:1703817-1704058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
93, 47
               

               
Conread position:
               
81-338
               

               
Cow position:
               
chr6:42034785-42035037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
69, 42
               

               
Conread position:
               
81-341
               

               
Cow position:
               
chr6:30502111-30501853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
92, 48
               

               
Conread position:
               
81-342
               

               
Cow position:
               
chr6:21587417-21587161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
130, 27
               

               
Conread position:
               
81-347
               

               
Cow position:
               
chr6:33450957-33450704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
93, 47
               

               
Conread position:
               
81-350
               

               
Cow position:
               
chr6:29775635-29775896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
131, 42
               

               
Conread position:
               
81-350
               

               
Cow position:
               
chr6:37692764-37693031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
91, 32
               

               
Conread position:
               
81-351
               

               
Cow position:
               
chr6:21470416-21470152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
93, 47
               

               
Conread position:
               
82-243
               

               
Cow position:
               
chr6:61569646-61569803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
89, 38
               

               
Conread position:
               
82-308
               

               
Cow position:
               
chr6:54127799-54127584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
130, 46
               

               
Conread position:
               
82-337
               

               
Cow position:
               
chr6:30023899-30024144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
92, 47
               

               
Conread position:
               
83-277
               

               
Cow position:
               
chr6:69153428-69153618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
94, 27
               

               
Conread position:
               
83-310
               

               
Cow position:
               
chr6:21535052-21535279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
91, 45
               

               
Conread position:
               
83-339
               

               
Cow position:
               
chr6:25435019-25434758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
129, 45
               

               
Conread position:
               
83-340
               

               
Cow position:
               
chr6:12623530-12623777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
84-328
               

               
Cow position:
               
chr6:1866748-1866988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
90, 24
               

               
Conread position:
               
86-322
               

               
Cow position:
               
chr6:18080497-18080267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
88, 43
               

               
Conread position:
               
91-294
               

               
Cow position:
               
chr6:19695832-19696032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
83, 19
               

               
Conread position:
               
91-319
               

               
Cow position:
               
chr6:33150269-33150046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
54, 38
               

               
Conread position:
               
92-308
               

               
Cow position:
               
chr6:30825742-30825540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
82, 31
               

               
Conread position:
               
92-339
               

               
Cow position:
               
chr6:16090927-16091166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
82, 36
               

               
Conread position:
               
93-241
               

               
Cow position:
               
chr6:19519400-19519546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
134, 35
               

               
Conread position:
               
94-333
               

               
Cow position:
               
chr6:42728671-42728911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
80, 34
               

               
Conread position:
               
95-315
               

               
Cow position:
               
chr6:50883651-50883435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
80, 33
               

               
Conread position:
               
99-335
               

               
Cow position:
               
chr6:23938091-23938315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
102-333
               

               
Cow position:
               
chr6:5601736-5601963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
107, 21
               

               
Conread position:
               
104-333
               

               
Cow position:
               
chr6:41226794-41226584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
69, 24
               

               
Conread position:
               
106-330
               

               
Cow position:
               
chr6:3936822-3937048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
68, 23
               

               
Conread position:
               
107-311
               

               
Cow position:
               
chr6:32006420-32006216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
13, 125
               

               
Conread position:
               
107-344
               

               
Cow position:
               
chr6:43906645-43906404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
68, 9
               

               
Conread position:
               
108-313
               

               
Cow position:
               
chr6:58173384-58173584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
20, 113
               

               
Conread position:
               
108-323
               

               
Cow position:
               
chr6:36225146-36225363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
66, 17
               

               
Conread position:
               
108-347
               

               
Cow position:
               
chr6:14383713-14383954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
66, 21
               

               
Conread position:
               
110-345
               

               
Cow position:
               
chr6:38550590-38550351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
21, 96
               

               
Conread position:
               
111-323
               

               
Cow position:
               
chr6:21184182-21183968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
94, 12
               

               
Conread position:
               
113-326
               

               
Cow position:
               
chr6:47245821-47246038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
9, 45
               

               
Conread position:
               
114-344
               

               
Cow position:
               
chr6:62805682-62805919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
115-322
               

               
Cow position:
               
chr6:60777814-60778027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 19
               

               
Conread position:
               
116-294
               

               
Cow position:
               
chr6:24905671-24905845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 120
               

               
Conread position:
               
117-327
               

               
Cow position:
               
chr6:54889645-54889860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
118-324
               

               
Cow position:
               
chr6:57299805-57300023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
119-310
               

               
Cow position:
               
chr6:68246787-68246592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
120-320
               

               
Cow position:
               
chr6:36938916-36939123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
120-343
               

               
Cow position:
               
chr6:33960601-33960375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
55, 80
               

               
Conread position:
               
121-330
               

               
Cow position:
               
chr6:18776300-18776504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
92, 55
               

               
Conread position:
               
123-311
               

               
Cow position:
               
chr6:17404612-17404803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
92, 55
               

               
Conread position:
               
123-314
               

               
Cow position:
               
chr6:34380763-34380575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
86, 97
               

               
Conread position:
               
123-320
               

               
Cow position:
               
chr6:60186611-60186402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
124-241
               

               
Cow position:
               
chr6:28900379-28900497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 103
               

               
Conread position:
               
124-244
               

               
Cow position:
               
chr6:35702292-35702172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
48, 105
               

               
Conread position:
               
124-290
               

               
Cow position:
               
chr6:15058429-15058594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
50, 105
               

               
Conread position:
               
124-294
               

               
Cow position:
               
chr6:40682610-40682445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
50, 25
               

               
Conread position:
               
124-308
               

               
Cow position:
               
chr6:21083488-21083304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
50, 113
               

               
Conread position:
               
124-310
               

               
Cow position:
               
chr6:19563431-19563240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
124-310
               

               
Cow position:
               
chr6:26054852-26054661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
124-322
               

               
Cow position:
               
chr6:36537308-36537112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
50, 102
               

               
Conread position:
               
124-324
               

               
Cow position:
               
chr6:67574441-67574643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
49, 35
               

               
Conread position:
               
124-329
               

               
Cow position:
               
chr6:24514493-24514277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
33, 200
               

               
Conread position:
               
124-329
               

               
Cow position:
               
chr6:41657320-41657522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
52, 106
               

               
Conread position:
               
124-330
               

               
Cow position:
               
chr6:34475508-34475299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
124-334
               

               
Cow position:
               
chr6:55548481-55548266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
50, 105
               

               
Conread position:
               
124-340
               

               
Cow position:
               
chr6:8187137-8186919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
50, 187
               

               
Conread position:
               
124-341
               

               
Cow position:
               
chr6:24491081-24491306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
39, 112
               

               
Conread position:
               
124-351
               

               
Cow position:
               
chr6:21350980-21350751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
125-310
               

               
Cow position:
               
chr6:4323383-4323561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
49, 86
               

               
Conread position:
               
126-324
               

               
Cow position:
               
chr6:58697577-58697374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
126-333
               

               
Cow position:
               
chr6:15266298-15266101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
24, 19
               

               
Conread position:
               
127-309
               

               
Cow position:
               
chr6:53711458-53711641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
47, 93
               

               
Conread position:
               
127-310
               

               
Cow position:
               
chr6:36643436-36643248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
50, 25
               

               
Conread position:
               
127-310
               

               
Cow position:
               
chr6:66259785-66259976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
127-312
               

               
Cow position:
               
chr6:34569463-34569657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
127-323
               

               
Cow position:
               
chr6:59297108-59297297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
47, 79
               

               
Conread position:
               
127-330
               

               
Cow position:
               
chr6:35985081-35984875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
127-332
               

               
Cow position:
               
chr6:15587539-15587326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
47, 77
               

               
Conread position:
               
127-333
               

               
Cow position:
               
chr6:34076219-34076422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
45, 7
               

               
Conread position:
               
127-334
               

               
Cow position:
               
chr6:45921158-45920956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
47, 79
               

               
Conread position:
               
127-338
               

               
Cow position:
               
chr6:24776194-24776405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 100
               

               
Conread position:
               
127-351
               

               
Cow position:
               
chr6:30895936-30895706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
128-309
               

               
Cow position:
               
chr6:54820888-54821072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
129-351
               

               
Cow position:
               
chr6:34423401-34423180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
45, 100
               

               
Conread position:
               
130-265
               

               
Cow position:
               
chr6:58076452-58076590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
130-289
               

               
Cow position:
               
chr6:61644800-61644638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
130-310
               

               
Cow position:
               
chr6:45159999-45159816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
130-310
               

               
Cow position:
               
chr6:49685877-49686059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
44, 15
               

               
Conread position:
               
130-310
               

               
Cow position:
               
chr6:62724614-62724797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
47, 74
               

               
Conread position:
               
130-314
               

               
Cow position:
               
chr6:25773157-25772976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
44, 19
               

               
Conread position:
               
130-317
               

               
Cow position:
               
chr6:50682239-50682054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
82, 34
               

               
Conread position:
               
130-317
               

               
Cow position:
               
chr6:57467655-57467844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
44, 185
               

               
Conread position:
               
130-317
               

               
Cow position:
               
chr6:63168705-63168517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
42, 19
               

               
Conread position:
               
130-321
               

               
Cow position:
               
chr6:13742047-13742237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
82, 49
               

               
Conread position:
               
130-323
               

               
Cow position:
               
chr6:36570518-36570718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
130-327
               

               
Cow position:
               
chr6:28088989-28088790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
47, 74
               

               
Conread position:
               
130-328
               

               
Cow position:
               
chr6:1173898-1173693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
44, 192
               

               
Conread position:
               
130-328
               

               
Cow position:
               
chr6:28562110-28561910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
43, 70
               

               
Conread position:
               
130-330
               

               
Cow position:
               
chr6:33302453-33302655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
130-336
               

               
Cow position:
               
chr6:21052391-21052184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
44, 186
               

               
Conread position:
               
130-337
               

               
Cow position:
               
chr6:62078981-62079190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
42, 107
               

               
Conread position:
               
130-343
               

               
Cow position:
               
chr6:14263832-14263617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 53
               

               
Conread position:
               
130-348
               

               
Cow position:
               
chr6:50771304-50771087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
47, 162
               

               
Conread position:
               
131-294
               

               
Cow position:
               
chr6:14471422-14471588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
131-329
               

               
Cow position:
               
chr6:8369482-8369681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
43, 16
               

               
Conread position:
               
131-338
               

               
Cow position:
               
chr6:26408445-26408235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
132-310
               

               
Cow position:
               
chr6:53811643-53811825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
132-325
               

               
Cow position:
               
chr6:35342121-35341933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
13, 69
               

               
Conread position:
               
132-325
               

               
Cow position:
               
chr6:66947761-66947562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
40, 97
               

               
Conread position:
               
132-342
               

               
Cow position:
               
chr6:18440417-18440207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
42, 153
               

               
Conread position:
               
132-342
               

               
Cow position:
               
chr6:67543997-67543784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
132-349
               

               
Cow position:
               
chr6:66293545-66293758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
42, 143
               

               
Conread position:
               
133-301
               

               
Cow position:
               
chr6:47022622-47022789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 71
               

               
Conread position:
               
133-338
               

               
Cow position:
               
chr6:44544087-44543878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
136-324
               

               
Cow position:
               
chr6:22876866-22876671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
136-324
               

               
Cow position:
               
chr6:37994273-37994457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
23, 78
               

               
Conread position:
               
136-329
               

               
Cow position:
               
chr6:6614686-6614884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
137-342
               

               
Cow position:
               
chr6:6850387-6850586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
35, 95
               

               
Conread position:
               
138-339
               

               
Cow position:
               
chr6:154536-154744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
36, 147
               

               
Conread position:
               
140-326
               

               
Cow position:
               
chr6:5600792-5600615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
34, 89
               

               
Conread position:
               
141-310
               

               
Cow position:
               
chr6:19225315-19225153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
10, 95
               

               
Conread position:
               
141-328
               

               
Cow position:
               
chr6:16411680-16411873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
141-336
               

               
Cow position:
               
chr6:10225586-10225387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
31, 172
               

               
Conread position:
               
141-346
               

               
Cow position:
               
chr6:15974454-15974249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
33, 86
               

               
Conread position:
               
145-302
               

               
Cow position:
               
chr6:63182362-63182516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 71
               

               
Conread position:
               
145-310
               

               
Cow position:
               
chr6:7291389-7291550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
29, 81
               

               
Conread position:
               
145-326
               

               
Cow position:
               
chr6:8726751-8726932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
29, 75
               

               
Conread position:
               
146-294
               

               
Cow position:
               
chr6:2014203-2014348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
22, 35
               

               
Conread position:
               
146-349
               

               
Cow position:
               
chr6:28559612-28559816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
28, 158
               

               
Conread position:
               
147-322
               

               
Cow position:
               
chr6:45633910-45633744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
66, 21
               

               
Conread position:
               
149-294
               

               
Cow position:
               
chr6:17172904-17173051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
21, 30
               

               
Conread position:
               
149-301
               

               
Cow position:
               
chr6:2757862-2758012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
25, 71
               

               
Conread position:
               
149-310
               

               
Cow position:
               
chr6:34463510-34463351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
15, 80
               

               
Conread position:
               
149-312
               

               
Cow position:
               
chr6:48278811-48278654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
25, 80
               

               
Conread position:
               
149-330
               

               
Cow position:
               
chr6:54840430-54840239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
149-337
               

               
Cow position:
               
chr6:49645886-49646088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
25, 179
               

               
Conread position:
               
150-308
               

               
Cow position:
               
chr6:24903499-24903338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
150-308
               

               
Cow position:
               
chr6:38032936-38033095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
24, 76
               

               
Conread position:
               
150-310
               

               
Cow position:
               
chr6:21175416-21175573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
24, 82
               

               
Conread position:
               
150-319
               

               
Cow position:
               
chr6:5445746-5445916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
24, 10
               

               
Conread position:
               
150-328
               

               
Cow position:
               
chr6:19936491-19936313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
24, 163
               

               
Conread position:
               
150-343
               

               
Cow position:
               
chr6:16137692-16137495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
150-350
               

               
Cow position:
               
chr6:53732060-53732265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
152-327
               

               
Cow position:
               
chr6:54406719-54406551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
22, 85
               

               
Conread position:
               
155-322
               

               
Cow position:
               
chr6:45471506-45471336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
19, 162
               

               
Conread position:
               
155-334
               

               
Cow position:
               
chr6:47790716-47790538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
19, 159
               

               
Conread position:
               
156-337
               

               
Cow position:
               
chr6:13097316-13097133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
18, 48
               

               
Conread position:
               
157-327
               

               
Cow position:
               
chr6:31928722-31928898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
157-341
               

               
Cow position:
               
chr6:59687727-59687539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
157-348
               

               
Cow position:
               
chr6:67290570-67290377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 43
               

               
Conread position:
               
160-319
               

               
Cow position:
               
chr6:55945875-55945708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
160-337
               

               
Cow position:
               
chr6:57935484-57935311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
52, 74
               

               
Conread position:
               
160-338
               

               
Cow position:
               
chr6:54828234-54828052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
160-339
               

               
Cow position:
               
chr6:26764739-26764555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
14, 159
               

               
Conread position:
               
161-329
               

               
Cow position:
               
chr6:16016123-16016296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
164-345
               

               
Cow position:
               
chr6:57143604-57143421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
13, 147
               

               
Conread position:
               
170-333
               

               
Cow position:
               
chr6:60088377-60088213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
42, 49
               

               
Conread position:
               
171-322
               

               
Cow position:
               
chr6:30688411-30688258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
38, 127
               

               
Conread position:
               
171-323
               

               
Cow position:
               
chr6:47673047-47672901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
41, 57
               

               
Conread position:
               
171-325
               

               
Cow position:
               
chr6:63233616-63233770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
45, 73
               

               
Conread position:
               
171-335
               

               
Cow position:
               
chr6:36891752-36891910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
42, 106
               

               
Conread position:
               
172-329
               

               
Cow position:
               
chr6:4049051-4048891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
173-288
               

               
Cow position:
               
chr6:53235550-53235436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
36, 63
               

               
Conread position:
               
173-310
               

               
Cow position:
               
chr6:23381566-23381427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
173-310
               

               
Cow position:
               
chr6:66058605-66058470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
40, 55
               

               
Conread position:
               
173-322
               

               
Cow position:
               
chr6:21347048-21346902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
40, 52
               

               
Conread position:
               
173-323
               

               
Cow position:
               
chr6:31228834-31228992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
36, 151
               

               
Conread position:
               
173-332
               

               
Cow position:
               
chr6:11262849-11263002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 56
               

               
Conread position:
               
173-333
               

               
Cow position:
               
chr6:51648927-51649093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
36, 26
               

               
Conread position:
               
173-336
               

               
Cow position:
               
chr6:62849028-62849186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
173-342
               

               
Cow position:
               
chr6:27219270-27219435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
35, 55
               

               
Conread position:
               
176-306
               

               
Cow position:
               
chr6:59759276-59759404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
36, 52
               

               
Conread position:
               
176-328
               

               
Cow position:
               
chr6:31713572-31713733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
36, 148
               

               
Conread position:
               
177-324
               

               
Cow position:
               
chr6:43770792-43770648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
35, 52
               

               
Conread position:
               
177-328
               

               
Cow position:
               
chr6:24186491-24186344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
34, 42
               

               
Conread position:
               
178-331
               

               
Cow position:
               
chr6:55196320-55196477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
41, 25
               

               
Conread position:
               
179-325
               

               
Cow position:
               
chr6:6996795-6996645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
180-324
               

               
Cow position:
               
chr6:67810875-67810733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
32, 48
               

               
Conread position:
               
181-305
               

               
Cow position:
               
chr6:36846505-36846384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
31, 7
               

               
Conread position:
               
182-351
               

               
Cow position:
               
chr6:33865030-33864862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
36, 46
               

               
Conread position:
               
189-306
               

               
Cow position:
               
chr6:60673953-60674066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
23, 36
               

               
Conread position:
               
189-324
               

               
Cow position:
               
chr6:48661254-48661125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
191-335
               

               
Cow position:
               
chr6:456831-456685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
21, 92
               

               
Conread position:
               
194-350
               

               
Cow position:
               
chr6:19681840-19682000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
197-335
               

               
Cow position:
               
chr6:9452608-9452463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 94
               

               
Conread position:
               
197-335
               

               
Cow position:
               
chr6:51019275-51019415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
198-327
               

               
Cow position:
               
chr6:51862862-51862732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 30
               

               
Conread position:
               
206-326
               

               
Cow position:
               
chr6:16738748-16738871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
206-334
               

               
Cow position:
               
chr6:31231154-31231028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
210-343
               

               
Cow position:
               
chr6:36592305-36592435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
218-349
               

               
Cow position:
               
chr6:21200220-21200351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
11, 95
               

               
Conread position:
               
227-327
               

               
Cow position:
               
chr6:8666292-8666392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
227-331
               

               
Cow position:
               
chr6:54990515-54990414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
55, 0
               
Show alignments to all cow chromosomes.