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Cow genome map

           
Conread name:
           
recc2818c_g18.y1
        

               
Conread position:
               
1-310
               

               
Cow position:
               
chrX:43115070-43115377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 7
               

               
Conread position:
               
2-306
               

               
Cow position:
               
chrX:39219998-39220312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
29, 73
               

               
Conread position:
               
4-214
               

               
Cow position:
               
chrX:12082397-12082192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
168, 17
               

               
Conread position:
               
4-253
               

               
Cow position:
               
chrX:14599453-14599704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 112
               

               
Conread position:
               
4-323
               

               
Cow position:
               
chrX:4632929-4632612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
28, 64
               

               
Conread position:
               
5-186
               

               
Cow position:
               
chrX:27680320-27680501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
16, 111
               

               
Conread position:
               
5-209
               

               
Cow position:
               
chrX:37574772-37574966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
167, 17
               

               
Conread position:
               
5-222
               

               
Cow position:
               
chrX:37986154-37986365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
72, 106
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:38066529-38066310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
169, 47
               

               
Conread position:
               
5-232
               

               
Cow position:
               
chrX:15815008-15815236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 62
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chrX:878456-878218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
167, 117
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chrX:33493698-33493935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
24, 74
               

               
Conread position:
               
5-244
               

               
Cow position:
               
chrX:43730297-43730061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
46, 70
               

               
Conread position:
               
5-256
               

               
Cow position:
               
chrX:45670146-45670399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
29, 59
               

               
Conread position:
               
5-260
               

               
Cow position:
               
chrX:23113199-23113461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
25, 134
               

               
Conread position:
               
5-263
               

               
Cow position:
               
chrX:4043933-4043675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
167, 66
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chrX:24288004-24287740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 62
               

               
Conread position:
               
5-283
               

               
Cow position:
               
chrX:169618-169340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
169, 68
               

               
Conread position:
               
5-290
               

               
Cow position:
               
chrX:28878248-28877958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
83, 26
               

               
Conread position:
               
5-290
               

               
Cow position:
               
chrX:41192629-41192897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
76, 26
               

               
Conread position:
               
5-294
               

               
Cow position:
               
chrX:12309464-12309173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
32, 68
               

               
Conread position:
               
5-296
               

               
Cow position:
               
chrX:34238643-34238937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
68, 17
               

               
Conread position:
               
5-306
               

               
Cow position:
               
chrX:1499588-1499878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
29, 72
               

               
Conread position:
               
5-306
               

               
Cow position:
               
chrX:17794904-17795203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 26
               

               
Conread position:
               
5-306
               

               
Cow position:
               
chrX:22074721-22075019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 60
               

               
Conread position:
               
5-306
               

               
Cow position:
               
chrX:22482765-22482465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
121, 26
               

               
Conread position:
               
5-306
               

               
Cow position:
               
chrX:32330082-32330395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
25, 9
               

               
Conread position:
               
5-307
               

               
Cow position:
               
chrX:10516177-10516479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 77
               

               
Conread position:
               
5-309
               

               
Cow position:
               
chrX:11939006-11938726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
167, 60
               

               
Conread position:
               
5-310
               

               
Cow position:
               
chrX:31442900-31442611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
166, 39
               

               
Conread position:
               
5-310
               

               
Cow position:
               
chrX:38853119-38853439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
29, 62
               

               
Conread position:
               
5-310
               

               
Cow position:
               
chrX:41122989-41123273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
169, 65
               

               
Conread position:
               
5-310
               

               
Cow position:
               
chrX:45430095-45429803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
169, 59
               

               
Conread position:
               
5-311
               

               
Cow position:
               
chrX:34315443-34315756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
148, 117
               

               
Conread position:
               
5-312
               

               
Cow position:
               
chrX:7695670-7695993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 87
               

               
Conread position:
               
5-313
               

               
Cow position:
               
chrX:27394099-27393787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
26, 64
               

               
Conread position:
               
5-314
               

               
Cow position:
               
chrX:34376868-34377171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 81
               

               
Conread position:
               
5-320
               

               
Cow position:
               
chrX:21593209-21593528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
5-321
               

               
Cow position:
               
chrX:42381179-42380875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 65
               

               
Conread position:
               
5-322
               

               
Cow position:
               
chrX:21327827-21328151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
25, 131
               

               
Conread position:
               
5-323
               

               
Cow position:
               
chrX:4399050-4399358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 101
               

               
Conread position:
               
5-323
               

               
Cow position:
               
chrX:41870994-41871298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 23
               

               
Conread position:
               
5-323
               

               
Cow position:
               
chrX:45502073-45502375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
166, 11
               

               
Conread position:
               
5-324
               

               
Cow position:
               
chrX:29229931-29230249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
169, 44
               

               
Conread position:
               
5-326
               

               
Cow position:
               
chrX:12290649-12290962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
169, 59
               

               
Conread position:
               
5-328
               

               
Cow position:
               
chrX:6544177-6544491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
36, 52
               

               
Conread position:
               
5-328
               

               
Cow position:
               
chrX:8869483-8869158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 82
               

               
Conread position:
               
5-328
               

               
Cow position:
               
chrX:25815985-25815650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
29, 131
               

               
Conread position:
               
5-329
               

               
Cow position:
               
chrX:32420141-32420458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
32, 77
               

               
Conread position:
               
5-330
               

               
Cow position:
               
chrX:31949012-31948688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
23, 81
               

               
Conread position:
               
5-330
               

               
Cow position:
               
chrX:41027077-41027408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 124
               

               
Conread position:
               
5-330
               

               
Cow position:
               
chrX:41526600-41526288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 68
               

               
Conread position:
               
5-332
               

               
Cow position:
               
chrX:27206737-27207045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
164, 17
               

               
Conread position:
               
5-333
               

               
Cow position:
               
chrX:27431993-27431675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 69
               

               
Conread position:
               
5-334
               

               
Cow position:
               
chrX:5919417-5919739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 78
               

               
Conread position:
               
5-335
               

               
Cow position:
               
chrX:5872242-5872588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
40, 72
               

               
Conread position:
               
5-335
               

               
Cow position:
               
chrX:38218631-38218969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
29, 130
               

               
Conread position:
               
5-337
               

               
Cow position:
               
chrX:151826-152161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
25, 53
               

               
Conread position:
               
5-339
               

               
Cow position:
               
chrX:45976843-45977180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 128
               

               
Conread position:
               
5-340
               

               
Cow position:
               
chrX:12979906-12979577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 26
               

               
Conread position:
               
5-340
               

               
Cow position:
               
chrX:34837133-34836819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 61
               

               
Conread position:
               
5-342
               

               
Cow position:
               
chrX:33654920-33654580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
83, 67
               

               
Conread position:
               
5-343
               

               
Cow position:
               
chrX:34505126-34504792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 85
               

               
Conread position:
               
5-345
               

               
Cow position:
               
chrX:42492592-42492259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
25, 70
               

               
Conread position:
               
5-346
               

               
Cow position:
               
chrX:20887718-20887388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
70, 108
               

               
Conread position:
               
5-347
               

               
Cow position:
               
chrX:12095852-12095505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 82
               

               
Conread position:
               
6-154
               

               
Cow position:
               
chrX:26875957-26875811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
15, 76
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chrX:4515606-4515879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 73
               

               
Conread position:
               
6-301
               

               
Cow position:
               
chrX:34543710-34544005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
67, 25
               

               
Conread position:
               
7-237
               

               
Cow position:
               
chrX:23091798-23092025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
89, 11
               

               
Conread position:
               
7-308
               

               
Cow position:
               
chrX:6407472-6407770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
13, 80
               

               
Conread position:
               
7-312
               

               
Cow position:
               
chrX:13912998-13913305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 29
               

               
Conread position:
               
7-320
               

               
Cow position:
               
chrX:26492930-26493243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
37, 75
               

               
Conread position:
               
7-326
               

               
Cow position:
               
chrX:36356038-36356347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
23, 66
               

               
Conread position:
               
7-335
               

               
Cow position:
               
chrX:4403238-4403570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
116, 66
               

               
Conread position:
               
8-272
               

               
Cow position:
               
chrX:28866075-28865814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
47, 71
               

               
Conread position:
               
8-329
               

               
Cow position:
               
chrX:31729366-31729682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
9-314
               

               
Cow position:
               
chrX:19469575-19469281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 62
               

               
Conread position:
               
9-336
               

               
Cow position:
               
chrX:13177540-13177233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
20, 67
               

               
Conread position:
               
11-231
               

               
Cow position:
               
chrX:42470015-42469792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
26, 119
               

               
Conread position:
               
11-306
               

               
Cow position:
               
chrX:1088209-1087924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
41, 18
               

               
Conread position:
               
15-282
               

               
Cow position:
               
chrX:14275809-14275548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 111
               

               
Conread position:
               
16-329
               

               
Cow position:
               
chrX:16984564-16984882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
24, 124
               

               
Conread position:
               
18-294
               

               
Cow position:
               
chrX:4768682-4768940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 17
               

               
Conread position:
               
18-325
               

               
Cow position:
               
chrX:27261128-27261432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
132, 110
               

               
Conread position:
               
18-347
               

               
Cow position:
               
chrX:38935218-38935544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
11, 66
               

               
Conread position:
               
21-158
               

               
Cow position:
               
chrX:13785420-13785286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
42, 63
               

               
Conread position:
               
21-270
               

               
Cow position:
               
chrX:32623510-32623757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
42, 65
               

               
Conread position:
               
21-320
               

               
Cow position:
               
chrX:15820540-15820842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
153, 58
               

               
Conread position:
               
21-322
               

               
Cow position:
               
chrX:16762712-16763007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
151, 60
               

               
Conread position:
               
21-327
               

               
Cow position:
               
chrX:1466104-1466407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 60
               

               
Conread position:
               
22-216
               

               
Cow position:
               
chrX:37232357-37232541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
150, 44
               

               
Conread position:
               
22-220
               

               
Cow position:
               
chrX:29120990-29121185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
150, 49
               

               
Conread position:
               
22-222
               

               
Cow position:
               
chrX:39558406-39558210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
187, 51
               

               
Conread position:
               
22-225
               

               
Cow position:
               
chrX:7571847-7572049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
150, 60
               

               
Conread position:
               
22-225
               

               
Cow position:
               
chrX:48014379-48014578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
147, 7
               

               
Conread position:
               
22-226
               

               
Cow position:
               
chrX:45846043-45846245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
150, 93
               

               
Conread position:
               
22-231
               

               
Cow position:
               
chrX:42171352-42171149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
22-233
               

               
Cow position:
               
chrX:31311973-31312181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
152, 12
               

               
Conread position:
               
22-235
               

               
Cow position:
               
chrX:34401942-34402158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
150, 73
               

               
Conread position:
               
22-235
               

               
Cow position:
               
chrX:45414356-45414153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
128, 49
               

               
Conread position:
               
22-236
               

               
Cow position:
               
chrX:19097278-19097065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
106, 54
               

               
Conread position:
               
22-237
               

               
Cow position:
               
chrX:18273114-18272903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
150, 102
               

               
Conread position:
               
22-238
               

               
Cow position:
               
chrX:45113563-45113777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
122, 48
               

               
Conread position:
               
22-239
               

               
Cow position:
               
chrX:31627037-31626821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
57, 111
               

               
Conread position:
               
22-241
               

               
Cow position:
               
chrX:33639917-33640133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 79
               

               
Conread position:
               
22-241
               

               
Cow position:
               
chrX:41884470-41884254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
22-244
               

               
Cow position:
               
chrX:616318-616097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
152, 89
               

               
Conread position:
               
22-244
               

               
Cow position:
               
chrX:619060-618847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
187, 60
               

               
Conread position:
               
22-244
               

               
Cow position:
               
chrX:5135581-5135357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
152, 61
               

               
Conread position:
               
22-244
               

               
Cow position:
               
chrX:6690312-6690101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
152, 34
               

               
Conread position:
               
22-244
               

               
Cow position:
               
chrX:9365731-9365513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
152, 34
               

               
Conread position:
               
22-244
               

               
Cow position:
               
chrX:17725918-17726137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
146, 58
               

               
Conread position:
               
22-244
               

               
Cow position:
               
chrX:23562579-23562798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
152, 18
               

               
Conread position:
               
22-244
               

               
Cow position:
               
chrX:36067957-36068182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
152, 60
               

               
Conread position:
               
22-245
               

               
Cow position:
               
chrX:32978133-32977922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
150, 51
               

               
Conread position:
               
22-248
               

               
Cow position:
               
chrX:38208599-38208378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
84, 38
               

               
Conread position:
               
22-250
               

               
Cow position:
               
chrX:38006820-38006603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
152, 57
               

               
Conread position:
               
22-260
               

               
Cow position:
               
chrX:6278556-6278315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
150, 49
               

               
Conread position:
               
22-265
               

               
Cow position:
               
chrX:16416452-16416686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
193, 57
               

               
Conread position:
               
22-265
               

               
Cow position:
               
chrX:31252362-31252591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
189, 49
               

               
Conread position:
               
22-272
               

               
Cow position:
               
chrX:34502866-34503118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
150, 61
               

               
Conread position:
               
22-273
               

               
Cow position:
               
chrX:34532465-34532709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 18
               

               
Conread position:
               
22-280
               

               
Cow position:
               
chrX:13647841-13647586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
152, 27
               

               
Conread position:
               
22-281
               

               
Cow position:
               
chrX:1055450-1055182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
22-281
               

               
Cow position:
               
chrX:40283070-40283322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
152, 48
               

               
Conread position:
               
22-284
               

               
Cow position:
               
chrX:4279173-4278914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
152, 47
               

               
Conread position:
               
22-290
               

               
Cow position:
               
chrX:41068665-41068928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
50, 107
               

               
Conread position:
               
22-291
               

               
Cow position:
               
chrX:35542839-35543093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
152, 62
               

               
Conread position:
               
22-294
               

               
Cow position:
               
chrX:1360030-1360294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
98, 42
               

               
Conread position:
               
22-294
               

               
Cow position:
               
chrX:1616100-1615846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
144, 100
               

               
Conread position:
               
22-294
               

               
Cow position:
               
chrX:10831549-10831269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
136, 101
               

               
Conread position:
               
22-294
               

               
Cow position:
               
chrX:30840488-30840753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
106, 22
               

               
Conread position:
               
22-296
               

               
Cow position:
               
chrX:8731031-8731308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
46, 110
               

               
Conread position:
               
22-296
               

               
Cow position:
               
chrX:44703128-44702851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
133, 58
               

               
Conread position:
               
22-297
               

               
Cow position:
               
chrX:35273299-35273587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
47, 113
               

               
Conread position:
               
22-298
               

               
Cow position:
               
chrX:37119538-37119791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
150, 49
               

               
Conread position:
               
22-301
               

               
Cow position:
               
chrX:27228072-27228348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
22-302
               

               
Cow position:
               
chrX:40685387-40685109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 104
               

               
Conread position:
               
22-305
               

               
Cow position:
               
chrX:37781167-37780889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 61
               

               
Conread position:
               
22-305
               

               
Cow position:
               
chrX:40269432-40269731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
131, 99
               

               
Conread position:
               
22-306
               

               
Cow position:
               
chrX:21986348-21986077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
22-306
               

               
Cow position:
               
chrX:42927875-42927606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 47
               

               
Conread position:
               
22-306
               

               
Cow position:
               
chrX:44396962-44397235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
196, 51
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chrX:918783-918501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
111, 59
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chrX:6413992-6414260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
152, 42
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chrX:9252218-9251935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 62
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chrX:13382274-13382570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chrX:21642534-21642253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
150, 40
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chrX:24365881-24365594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
50, 64
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chrX:25036931-25037220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
153, 58
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chrX:27174940-27175228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
20, 39
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chrX:33855289-33854998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
60, 110
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chrX:34313973-34314249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 59
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chrX:38549391-38549675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
152, 48
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chrX:40035499-40035214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 59
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chrX:40557737-40557430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
152, 58
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chrX:45648817-45649098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
33, 8
               

               
Conread position:
               
22-311
               

               
Cow position:
               
chrX:9201494-9201772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 49
               

               
Conread position:
               
22-311
               

               
Cow position:
               
chrX:38964049-38964326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
34, 60
               

               
Conread position:
               
22-311
               

               
Cow position:
               
chrX:40680555-40680844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
118, 107
               

               
Conread position:
               
22-312
               

               
Cow position:
               
chrX:4109134-4109415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
22-312
               

               
Cow position:
               
chrX:29050191-29050472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 100
               

               
Conread position:
               
22-312
               

               
Cow position:
               
chrX:34792364-34792093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 48
               

               
Conread position:
               
22-313
               

               
Cow position:
               
chrX:14884014-14883726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
151, 60
               

               
Conread position:
               
22-313
               

               
Cow position:
               
chrX:38560502-38560781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
152, 35
               

               
Conread position:
               
22-314
               

               
Cow position:
               
chrX:12249746-12250049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
43, 34
               

               
Conread position:
               
22-314
               

               
Cow position:
               
chrX:26881624-26881329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 100
               

               
Conread position:
               
22-315
               

               
Cow position:
               
chrX:23514071-23513768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
22-318
               

               
Cow position:
               
chrX:38094577-38094290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
72, 108
               

               
Conread position:
               
22-319
               

               
Cow position:
               
chrX:29542275-29541991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
190, 59
               

               
Conread position:
               
22-320
               

               
Cow position:
               
chrX:161357-161638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
152, 33
               

               
Conread position:
               
22-320
               

               
Cow position:
               
chrX:20168502-20168792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
152, 58
               

               
Conread position:
               
22-321
               

               
Cow position:
               
chrX:42855399-42855702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
60, 18
               

               
Conread position:
               
22-322
               

               
Cow position:
               
chrX:6559501-6559215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
190, 42
               

               
Conread position:
               
22-322
               

               
Cow position:
               
chrX:13121874-13122184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
36, 112
               

               
Conread position:
               
22-322
               

               
Cow position:
               
chrX:20584268-20584552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 107
               

               
Conread position:
               
22-322
               

               
Cow position:
               
chrX:36975896-36976192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
150, 12
               

               
Conread position:
               
22-323
               

               
Cow position:
               
chrX:22115372-22115073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
22-324
               

               
Cow position:
               
chrX:46532557-46532249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
57, 109
               

               
Conread position:
               
22-325
               

               
Cow position:
               
chrX:27442611-27442295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
44, 115
               

               
Conread position:
               
22-325
               

               
Cow position:
               
chrX:40108572-40108270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
119, 30
               

               
Conread position:
               
22-326
               

               
Cow position:
               
chrX:5118558-5118252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 22
               

               
Conread position:
               
22-326
               

               
Cow position:
               
chrX:25035435-25035141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
152, 42
               

               
Conread position:
               
22-326
               

               
Cow position:
               
chrX:31250331-31250634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
152, 59
               

               
Conread position:
               
22-327
               

               
Cow position:
               
chrX:7351245-7351547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
150, 51
               

               
Conread position:
               
22-327
               

               
Cow position:
               
chrX:40826807-40826500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
152, 60
               

               
Conread position:
               
22-328
               

               
Cow position:
               
chrX:4153091-4152797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 99
               

               
Conread position:
               
22-328
               

               
Cow position:
               
chrX:9651081-9650780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 13
               

               
Conread position:
               
22-328
               

               
Cow position:
               
chrX:11633624-11633927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 61
               

               
Conread position:
               
22-328
               

               
Cow position:
               
chrX:34565225-34565534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
49, 108
               

               
Conread position:
               
22-329
               

               
Cow position:
               
chrX:296339-296639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
51, 90
               

               
Conread position:
               
22-329
               

               
Cow position:
               
chrX:9635241-9634945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
152, 48
               

               
Conread position:
               
22-329
               

               
Cow position:
               
chrX:36866115-36866419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
64, 42
               

               
Conread position:
               
22-329
               

               
Cow position:
               
chrX:48071105-48071413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
152, 62
               

               
Conread position:
               
22-330
               

               
Cow position:
               
chrX:4512179-4512494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
49, 69
               

               
Conread position:
               
22-330
               

               
Cow position:
               
chrX:47484321-47484010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
152, 60
               

               
Conread position:
               
22-331
               

               
Cow position:
               
chrX:30273-30580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
98, 51
               

               
Conread position:
               
22-331
               

               
Cow position:
               
chrX:27705531-27705836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
151, 35
               

               
Conread position:
               
22-331
               

               
Cow position:
               
chrX:29601886-29601579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 59
               

               
Conread position:
               
22-332
               

               
Cow position:
               
chrX:12437326-12437033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
191, 60
               

               
Conread position:
               
22-332
               

               
Cow position:
               
chrX:17949543-17949245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
150, 66
               

               
Conread position:
               
22-332
               

               
Cow position:
               
chrX:18485742-18486054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
109, 51
               

               
Conread position:
               
22-332
               

               
Cow position:
               
chrX:23563846-23563537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
150, 41
               

               
Conread position:
               
22-332
               

               
Cow position:
               
chrX:30338002-30337705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
152, 47
               

               
Conread position:
               
22-332
               

               
Cow position:
               
chrX:48236763-48237066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
93, 54
               

               
Conread position:
               
22-335
               

               
Cow position:
               
chrX:32820974-32821290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
22-336
               

               
Cow position:
               
chrX:34554670-34554979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
152, 42
               

               
Conread position:
               
22-337
               

               
Cow position:
               
chrX:28013503-28013187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
98, 62
               

               
Conread position:
               
22-337
               

               
Cow position:
               
chrX:29680316-29680007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
150, 68
               

               
Conread position:
               
22-337
               

               
Cow position:
               
chrX:33000847-33001155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
22-337
               

               
Cow position:
               
chrX:46072876-46072573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
147, 106
               

               
Conread position:
               
22-337
               

               
Cow position:
               
chrX:47588656-47588969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
152, 59
               

               
Conread position:
               
22-339
               

               
Cow position:
               
chrX:22283776-22284096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
42, 33
               

               
Conread position:
               
22-340
               

               
Cow position:
               
chrX:27459800-27460122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
87, 51
               

               
Conread position:
               
22-340
               

               
Cow position:
               
chrX:46291082-46291399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
151, 34
               

               
Conread position:
               
22-341
               

               
Cow position:
               
chrX:5638224-5637919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
296, 51
               

               
Conread position:
               
22-341
               

               
Cow position:
               
chrX:14955820-14955505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
122, 33
               

               
Conread position:
               
22-341
               

               
Cow position:
               
chrX:16348624-16348296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
50, 107
               

               
Conread position:
               
22-341
               

               
Cow position:
               
chrX:35885783-35885471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
49, 29
               

               
Conread position:
               
22-342
               

               
Cow position:
               
chrX:44961693-44962017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
151, 59
               

               
Conread position:
               
22-344
               

               
Cow position:
               
chrX:31489464-31489782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
152, 34
               

               
Conread position:
               
22-345
               

               
Cow position:
               
chrX:8917341-8917658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
146, 49
               

               
Conread position:
               
22-345
               

               
Cow position:
               
chrX:34411786-34412111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 107
               

               
Conread position:
               
22-347
               

               
Cow position:
               
chrX:21672500-21672830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
106, 51
               

               
Conread position:
               
22-348
               

               
Cow position:
               
chrX:7721933-7722239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
153, 107
               

               
Conread position:
               
22-348
               

               
Cow position:
               
chrX:11085112-11084792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
204, 33
               

               
Conread position:
               
22-349
               

               
Cow position:
               
chrX:22387298-22386979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
150, 49
               

               
Conread position:
               
22-349
               

               
Cow position:
               
chrX:39352724-39353038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
54, 98
               

               
Conread position:
               
22-350
               

               
Cow position:
               
chrX:2675013-2674685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
51, 61
               

               
Conread position:
               
22-350
               

               
Cow position:
               
chrX:30133376-30133052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
62, 42
               

               
Conread position:
               
22-350
               

               
Cow position:
               
chrX:31436422-31436738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 16
               

               
Conread position:
               
22-351
               

               
Cow position:
               
chrX:17231677-17232010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 61
               

               
Conread position:
               
22-351
               

               
Cow position:
               
chrX:20339945-20339624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
190, 33
               

               
Conread position:
               
22-351
               

               
Cow position:
               
chrX:25283070-25282746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
137, 51
               

               
Conread position:
               
22-351
               

               
Cow position:
               
chrX:46587764-46588092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 51
               

               
Conread position:
               
23-216
               

               
Cow position:
               
chrX:35224241-35224429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
149, 55
               

               
Conread position:
               
23-221
               

               
Cow position:
               
chrX:11073247-11073052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
151, 21
               

               
Conread position:
               
23-222
               

               
Cow position:
               
chrX:46429875-46429679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
149, 11
               

               
Conread position:
               
23-260
               

               
Cow position:
               
chrX:6541791-6541547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
151, 50
               

               
Conread position:
               
23-307
               

               
Cow position:
               
chrX:44339379-44339096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
151, 105
               

               
Conread position:
               
23-322
               

               
Cow position:
               
chrX:34441506-34441210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
87, 79
               

               
Conread position:
               
23-324
               

               
Cow position:
               
chrX:42247241-42246939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 106
               

               
Conread position:
               
23-335
               

               
Cow position:
               
chrX:5134420-5134724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
141, 47
               

               
Conread position:
               
23-344
               

               
Cow position:
               
chrX:30962928-30962609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
149, 41
               

               
Conread position:
               
24-196
               

               
Cow position:
               
chrX:7509088-7509252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
150, 57
               

               
Conread position:
               
24-294
               

               
Cow position:
               
chrX:34222660-34222926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
185, 57
               

               
Conread position:
               
24-336
               

               
Cow position:
               
chrX:35985764-35986069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 55
               

               
Conread position:
               
25-222
               

               
Cow position:
               
chrX:25328659-25328475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
147, 39
               

               
Conread position:
               
25-329
               

               
Cow position:
               
chrX:45110603-45110898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
146, 51
               

               
Conread position:
               
25-339
               

               
Cow position:
               
chrX:38654485-38654175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
184, 46
               

               
Conread position:
               
26-213
               

               
Cow position:
               
chrX:19273766-19273577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
12, 100
               

               
Conread position:
               
26-265
               

               
Cow position:
               
chrX:18964876-18964642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
148, 12
               

               
Conread position:
               
26-306
               

               
Cow position:
               
chrX:15007201-15006935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
25, 18
               

               
Conread position:
               
26-327
               

               
Cow position:
               
chrX:38321439-38321139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
50, 85
               

               
Conread position:
               
26-330
               

               
Cow position:
               
chrX:45598653-45598357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
65, 47
               

               
Conread position:
               
26-332
               

               
Cow position:
               
chrX:47345282-47345580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
148, 42
               

               
Conread position:
               
27-328
               

               
Cow position:
               
chrX:27509074-27508778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
185, 37
               

               
Conread position:
               
28-328
               

               
Cow position:
               
chrX:24331729-24332020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
146, 51
               

               
Conread position:
               
28-339
               

               
Cow position:
               
chrX:20957198-20957494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 42
               

               
Conread position:
               
29-306
               

               
Cow position:
               
chrX:22393035-22392764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 54
               

               
Conread position:
               
31-346
               

               
Cow position:
               
chrX:36367989-36367670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
95, 49
               

               
Conread position:
               
32-294
               

               
Cow position:
               
chrX:19660509-19660242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
88, 38
               

               
Conread position:
               
32-315
               

               
Cow position:
               
chrX:37072348-37072619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
142, 24
               

               
Conread position:
               
32-319
               

               
Cow position:
               
chrX:36392234-36391952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
99, 30
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chrX:15231705-15231416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
141, 32
               

               
Conread position:
               
33-342
               

               
Cow position:
               
chrX:27306407-27306699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
139, 48
               

               
Conread position:
               
34-326
               

               
Cow position:
               
chrX:2523722-2523456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
140, 36
               

               
Conread position:
               
34-327
               

               
Cow position:
               
chrX:35822298-35822574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
34-336
               

               
Cow position:
               
chrX:6599828-6599520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 45
               

               
Conread position:
               
35-324
               

               
Cow position:
               
chrX:11326143-11325867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 46
               

               
Conread position:
               
37-326
               

               
Cow position:
               
chrX:19394511-19394797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 36
               

               
Conread position:
               
38-301
               

               
Cow position:
               
chrX:47061354-47061605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
139, 41
               

               
Conread position:
               
38-306
               

               
Cow position:
               
chrX:24749047-24749311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
136, 35
               

               
Conread position:
               
38-322
               

               
Cow position:
               
chrX:40532084-40531788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
134, 42
               

               
Conread position:
               
39-335
               

               
Cow position:
               
chrX:45228441-45228726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
80, 34
               

               
Conread position:
               
40-210
               

               
Cow position:
               
chrX:29585082-29585246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
134, 39
               

               
Conread position:
               
40-332
               

               
Cow position:
               
chrX:42893879-42894172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
31, 89
               

               
Conread position:
               
40-335
               

               
Cow position:
               
chrX:4289401-4289687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
137, 88
               

               
Conread position:
               
48-306
               

               
Cow position:
               
chrX:38642219-38642466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
126, 25
               

               
Conread position:
               
49-331
               

               
Cow position:
               
chrX:43150391-43150678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
22, 162
               

               
Conread position:
               
49-334
               

               
Cow position:
               
chrX:35431273-35430988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
49-341
               

               
Cow position:
               
chrX:17956666-17956948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
123, 24
               

               
Conread position:
               
52-329
               

               
Cow position:
               
chrX:28940219-28940491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 18
               

               
Conread position:
               
54-281
               

               
Cow position:
               
chrX:44660612-44660389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
119, 6
               

               
Conread position:
               
54-335
               

               
Cow position:
               
chrX:48473883-48474161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
121, 30
               

               
Conread position:
               
57-320
               

               
Cow position:
               
chrX:42432532-42432272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
67, 28
               

               
Conread position:
               
60-325
               

               
Cow position:
               
chrX:24633665-24633929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
68, 9
               

               
Conread position:
               
61-294
               

               
Cow position:
               
chrX:42282559-42282789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
80, 12
               

               
Conread position:
               
63-244
               

               
Cow position:
               
chrX:36848596-36848416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
44, 66
               

               
Conread position:
               
63-334
               

               
Cow position:
               
chrX:32574300-32574575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
111, 24
               

               
Conread position:
               
63-336
               

               
Cow position:
               
chrX:16836303-16836041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
111, 20
               

               
Conread position:
               
64-334
               

               
Cow position:
               
chrX:32943096-32942828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
9, 62
               

               
Conread position:
               
65-299
               

               
Cow position:
               
chrX:20151845-20152065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
109, 18
               

               
Conread position:
               
66-349
               

               
Cow position:
               
chrX:43008593-43008881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
11, 63
               

               
Conread position:
               
67-339
               

               
Cow position:
               
chrX:26979801-26979534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
146, 15
               

               
Conread position:
               
68-244
               

               
Cow position:
               
chrX:42160613-42160786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
69-327
               

               
Cow position:
               
chrX:27145592-27145844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
105, 59
               

               
Conread position:
               
70-335
               

               
Cow position:
               
chrX:26205460-26205204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
9, 44
               

               
Conread position:
               
70-348
               

               
Cow position:
               
chrX:40336897-40337177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
11, 43
               

               
Conread position:
               
71-322
               

               
Cow position:
               
chrX:22864286-22864021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
72-341
               

               
Cow position:
               
chrX:30672405-30672124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
95, 56
               

               
Conread position:
               
73-307
               

               
Cow position:
               
chrX:4466959-4467176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
98, 50
               

               
Conread position:
               
73-335
               

               
Cow position:
               
chrX:12972674-12972930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
101, 10
               

               
Conread position:
               
73-351
               

               
Cow position:
               
chrX:10865881-10865600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
100, 15
               

               
Conread position:
               
74-310
               

               
Cow position:
               
chrX:38587850-38587617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
98, 54
               

               
Conread position:
               
74-312
               

               
Cow position:
               
chrX:38967880-38968126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 40
               

               
Conread position:
               
74-322
               

               
Cow position:
               
chrX:37489710-37489967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
15, 43
               

               
Conread position:
               
75-291
               

               
Cow position:
               
chrX:31294576-31294360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
99, 7
               

               
Conread position:
               
75-321
               

               
Cow position:
               
chrX:29733598-29733352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
99, 53
               

               
Conread position:
               
75-325
               

               
Cow position:
               
chrX:41941615-41941866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
10, 56
               

               
Conread position:
               
75-331
               

               
Cow position:
               
chrX:11763007-11762762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
98, 53
               

               
Conread position:
               
76-278
               

               
Cow position:
               
chrX:47079618-47079824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
15, 57
               

               
Conread position:
               
76-316
               

               
Cow position:
               
chrX:38301805-38302051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
97, 11
               

               
Conread position:
               
76-319
               

               
Cow position:
               
chrX:3806677-3806917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
98, 33
               

               
Conread position:
               
76-328
               

               
Cow position:
               
chrX:17292950-17293202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
98, 32
               

               
Conread position:
               
76-336
               

               
Cow position:
               
chrX:26843275-26843012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
9, 34
               

               
Conread position:
               
77-347
               

               
Cow position:
               
chrX:42450019-42449745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
7, 53
               

               
Conread position:
               
78-334
               

               
Cow position:
               
chrX:27446683-27446935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
96, 43
               

               
Conread position:
               
79-310
               

               
Cow position:
               
chrX:36283336-36283568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
93, 46
               

               
Conread position:
               
79-339
               

               
Cow position:
               
chrX:15147195-15146942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
98, 30
               

               
Conread position:
               
79-347
               

               
Cow position:
               
chrX:29501883-29501619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
95, 35
               

               
Conread position:
               
80-323
               

               
Cow position:
               
chrX:25207855-25207619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
130, 11
               

               
Conread position:
               
80-337
               

               
Cow position:
               
chrX:27668959-27668708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 48
               

               
Conread position:
               
81-294
               

               
Cow position:
               
chrX:46070172-46069973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
24, 49
               

               
Conread position:
               
81-306
               

               
Cow position:
               
chrX:11653764-11653991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
47, 149
               

               
Conread position:
               
81-306
               

               
Cow position:
               
chrX:27075051-27074827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
93, 29
               

               
Conread position:
               
81-307
               

               
Cow position:
               
chrX:29478724-29478947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
93, 34
               

               
Conread position:
               
81-324
               

               
Cow position:
               
chrX:39290359-39290597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
93, 48
               

               
Conread position:
               
81-325
               

               
Cow position:
               
chrX:35275986-35276233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
93, 34
               

               
Conread position:
               
81-328
               

               
Cow position:
               
chrX:23335972-23335732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
93, 28
               

               
Conread position:
               
81-328
               

               
Cow position:
               
chrX:42331278-42331518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 147
               

               
Conread position:
               
81-332
               

               
Cow position:
               
chrX:34420734-34420983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
93, 40
               

               
Conread position:
               
81-333
               

               
Cow position:
               
chrX:42479833-42480075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
91, 47
               

               
Conread position:
               
81-336
               

               
Cow position:
               
chrX:35658800-35659048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
94, 21
               

               
Conread position:
               
81-337
               

               
Cow position:
               
chrX:4996585-4996844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
91, 42
               

               
Conread position:
               
81-341
               

               
Cow position:
               
chrX:31829461-31829198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
93, 47
               

               
Conread position:
               
82-315
               

               
Cow position:
               
chrX:32910105-32910331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
128, 33
               

               
Conread position:
               
82-322
               

               
Cow position:
               
chrX:7648409-7648172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
92, 27
               

               
Conread position:
               
82-323
               

               
Cow position:
               
chrX:48558747-48558986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
90, 39
               

               
Conread position:
               
82-327
               

               
Cow position:
               
chrX:11656082-11656322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 46
               

               
Conread position:
               
82-328
               

               
Cow position:
               
chrX:2935958-2936201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
92, 41
               

               
Conread position:
               
82-334
               

               
Cow position:
               
chrX:4328182-4327930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
93, 46
               

               
Conread position:
               
83-263
               

               
Cow position:
               
chrX:16575114-16575294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
91, 47
               

               
Conread position:
               
83-310
               

               
Cow position:
               
chrX:10252196-10251974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
89, 43
               

               
Conread position:
               
83-333
               

               
Cow position:
               
chrX:24170727-24170470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
89, 45
               

               
Conread position:
               
83-338
               

               
Cow position:
               
chrX:32208820-32208569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
129, 40
               

               
Conread position:
               
84-343
               

               
Cow position:
               
chrX:39180230-39179972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
88, 44
               

               
Conread position:
               
84-349
               

               
Cow position:
               
chrX:17524381-17524116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
90, 44
               

               
Conread position:
               
86-306
               

               
Cow position:
               
chrX:1122538-1122323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
88, 24
               

               
Conread position:
               
86-308
               

               
Cow position:
               
chrX:42836186-42836407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
88, 42
               

               
Conread position:
               
86-325
               

               
Cow position:
               
chrX:19761759-19761992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
88, 42
               

               
Conread position:
               
91-324
               

               
Cow position:
               
chrX:19018821-19018585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
83, 37
               

               
Conread position:
               
91-330
               

               
Cow position:
               
chrX:4559749-4559983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
83, 24
               

               
Conread position:
               
91-344
               

               
Cow position:
               
chrX:35285183-35285435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
84, 37
               

               
Conread position:
               
93-328
               

               
Cow position:
               
chrX:29467766-29467537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
84, 34
               

               
Conread position:
               
94-278
               

               
Cow position:
               
chrX:41862377-41862556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
80, 29
               

               
Conread position:
               
94-294
               

               
Cow position:
               
chrX:30824000-30824197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
79, 16
               

               
Conread position:
               
94-349
               

               
Cow position:
               
chrX:15545895-15546152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
78, 34
               

               
Conread position:
               
96-316
               

               
Cow position:
               
chrX:907961-908175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 32
               

               
Conread position:
               
96-333
               

               
Cow position:
               
chrX:46068744-46068514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
78, 13
               

               
Conread position:
               
97-306
               

               
Cow position:
               
chrX:35383020-35382818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
97-321
               

               
Cow position:
               
chrX:20583682-20583899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
97-321
               

               
Cow position:
               
chrX:31479987-31480203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
98-351
               

               
Cow position:
               
chrX:47854998-47855244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
30, 36
               

               
Conread position:
               
99-336
               

               
Cow position:
               
chrX:34508562-34508816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
75, 29
               

               
Conread position:
               
100-304
               

               
Cow position:
               
chrX:44991394-44991195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
102-290
               

               
Cow position:
               
chrX:41810147-41809967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
73, 26
               

               
Conread position:
               
102-335
               

               
Cow position:
               
chrX:32747749-32747973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
26, 128
               

               
Conread position:
               
103-320
               

               
Cow position:
               
chrX:32877353-32877140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
69, 18
               

               
Conread position:
               
106-325
               

               
Cow position:
               
chrX:13923884-13924103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
7, 125
               

               
Conread position:
               
106-330
               

               
Cow position:
               
chrX:32866900-32867120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
68, 22
               

               
Conread position:
               
107-325
               

               
Cow position:
               
chrX:23359085-23358874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
67, 21
               

               
Conread position:
               
107-346
               

               
Cow position:
               
chrX:7911046-7910809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 21
               

               
Conread position:
               
108-324
               

               
Cow position:
               
chrX:5026283-5026496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
64, 20
               

               
Conread position:
               
110-310
               

               
Cow position:
               
chrX:5097774-5097566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
10, 187
               

               
Conread position:
               
111-340
               

               
Cow position:
               
chrX:44995524-44995760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
112-325
               

               
Cow position:
               
chrX:24425975-24425758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
115-307
               

               
Cow position:
               
chrX:13347304-13347494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
97, 61
               

               
Conread position:
               
118-305
               

               
Cow position:
               
chrX:45759705-45759892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 111
               

               
Conread position:
               
118-347
               

               
Cow position:
               
chrX:19000160-19000394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
119-328
               

               
Cow position:
               
chrX:16763889-16763686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
119-330
               

               
Cow position:
               
chrX:8759661-8759871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
22, 9
               

               
Conread position:
               
121-323
               

               
Cow position:
               
chrX:41454917-41454711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
121-328
               

               
Cow position:
               
chrX:19203309-19203098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
53, 79
               

               
Conread position:
               
123-333
               

               
Cow position:
               
chrX:35409791-35410000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
51, 63
               

               
Conread position:
               
124-276
               

               
Cow position:
               
chrX:29688135-29687981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
50, 78
               

               
Conread position:
               
124-288
               

               
Cow position:
               
chrX:40046535-40046363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
51, 25
               

               
Conread position:
               
124-294
               

               
Cow position:
               
chrX:31986534-31986360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
47, 82
               

               
Conread position:
               
124-306
               

               
Cow position:
               
chrX:8326944-8327129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
124-308
               

               
Cow position:
               
chrX:41858842-41858658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
50, 106
               

               
Conread position:
               
124-310
               

               
Cow position:
               
chrX:27415540-27415359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 89
               

               
Conread position:
               
124-310
               

               
Cow position:
               
chrX:34398744-34398555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
50, 80
               

               
Conread position:
               
124-310
               

               
Cow position:
               
chrX:48822302-48822114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
124-316
               

               
Cow position:
               
chrX:6480556-6480361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
17, 6
               

               
Conread position:
               
124-323
               

               
Cow position:
               
chrX:37749943-37749752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
53, 21
               

               
Conread position:
               
124-325
               

               
Cow position:
               
chrX:46079125-46079332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
50, 76
               

               
Conread position:
               
124-327
               

               
Cow position:
               
chrX:34991404-34991606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
49, 105
               

               
Conread position:
               
124-331
               

               
Cow position:
               
chrX:46909855-46910060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
50, 104
               

               
Conread position:
               
124-332
               

               
Cow position:
               
chrX:4091964-4092170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
50, 161
               

               
Conread position:
               
124-332
               

               
Cow position:
               
chrX:27270415-27270618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
49, 106
               

               
Conread position:
               
124-335
               

               
Cow position:
               
chrX:41435509-41435292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
50, 193
               

               
Conread position:
               
124-336
               

               
Cow position:
               
chrX:17498362-17498580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
124-348
               

               
Cow position:
               
chrX:2314579-2314354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
50, 191
               

               
Conread position:
               
125-319
               

               
Cow position:
               
chrX:23485563-23485768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
48, 5
               

               
Conread position:
               
125-325
               

               
Cow position:
               
chrX:31983544-31983335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
126-310
               

               
Cow position:
               
chrX:23471824-23471640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
48, 117
               

               
Conread position:
               
127-312
               

               
Cow position:
               
chrX:16556174-16555993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
47, 59
               

               
Conread position:
               
127-312
               

               
Cow position:
               
chrX:37752063-37751879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 99
               

               
Conread position:
               
127-313
               

               
Cow position:
               
chrX:19407439-19407258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 29
               

               
Conread position:
               
127-318
               

               
Cow position:
               
chrX:42760295-42760490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
127-322
               

               
Cow position:
               
chrX:35681610-35681806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
47, 188
               

               
Conread position:
               
127-326
               

               
Cow position:
               
chrX:29451508-29451304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
47, 193
               

               
Conread position:
               
127-333
               

               
Cow position:
               
chrX:19717564-19717762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
50, 19
               

               
Conread position:
               
127-333
               

               
Cow position:
               
chrX:20345493-20345706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
127-334
               

               
Cow position:
               
chrX:6389124-6389330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
88, 101
               

               
Conread position:
               
127-334
               

               
Cow position:
               
chrX:8642089-8642295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
85, 48
               

               
Conread position:
               
127-336
               

               
Cow position:
               
chrX:1960382-1960169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
47, 117
               

               
Conread position:
               
127-341
               

               
Cow position:
               
chrX:14135720-14135932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
10, 103
               

               
Conread position:
               
127-349
               

               
Cow position:
               
chrX:28067893-28068122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
130-327
               

               
Cow position:
               
chrX:876796-876602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 31
               

               
Conread position:
               
130-327
               

               
Cow position:
               
chrX:23136786-23136976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 83
               

               
Conread position:
               
130-328
               

               
Cow position:
               
chrX:41453348-41453545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
44, 101
               

               
Conread position:
               
130-330
               

               
Cow position:
               
chrX:20666855-20666654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
130-335
               

               
Cow position:
               
chrX:41790383-41790177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
44, 121
               

               
Conread position:
               
130-341
               

               
Cow position:
               
chrX:10415207-10414994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
44, 185
               

               
Conread position:
               
130-351
               

               
Cow position:
               
chrX:42875258-42875481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
44, 99
               

               
Conread position:
               
131-322
               

               
Cow position:
               
chrX:17744678-17744862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
81, 26
               

               
Conread position:
               
131-322
               

               
Cow position:
               
chrX:27416140-27416335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
45, 31
               

               
Conread position:
               
131-331
               

               
Cow position:
               
chrX:11517933-11517729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
42, 69
               

               
Conread position:
               
131-334
               

               
Cow position:
               
chrX:30958773-30958980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
24, 158
               

               
Conread position:
               
131-335
               

               
Cow position:
               
chrX:597427-597228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
81, 45
               

               
Conread position:
               
132-309
               

               
Cow position:
               
chrX:41166777-41166602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
42, 85
               

               
Conread position:
               
132-310
               

               
Cow position:
               
chrX:37867301-37867482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
132-345
               

               
Cow position:
               
chrX:47100549-47100330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
133-294
               

               
Cow position:
               
chrX:10237864-10237701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
41, 85
               

               
Conread position:
               
133-341
               

               
Cow position:
               
chrX:6907360-6907161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
34, 93
               

               
Conread position:
               
134-322
               

               
Cow position:
               
chrX:48372445-48372261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
76, 38
               

               
Conread position:
               
134-330
               

               
Cow position:
               
chrX:1101607-1101798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
40, 72
               

               
Conread position:
               
136-338
               

               
Cow position:
               
chrX:12802-12998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
76, 42
               

               
Conread position:
               
136-350
               

               
Cow position:
               
chrX:4169979-4169756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
36, 92
               

               
Conread position:
               
137-335
               

               
Cow position:
               
chrX:11529395-11529588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
13, 92
               

               
Conread position:
               
138-321
               

               
Cow position:
               
chrX:5915242-5915429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
38, 182
               

               
Conread position:
               
139-306
               

               
Cow position:
               
chrX:27170794-27170958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 123
               

               
Conread position:
               
140-323
               

               
Cow position:
               
chrX:28106903-28107087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 80
               

               
Conread position:
               
140-325
               

               
Cow position:
               
chrX:42086884-42087070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
34, 5
               

               
Conread position:
               
140-334
               

               
Cow position:
               
chrX:41199280-41199471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 95
               

               
Conread position:
               
141-294
               

               
Cow position:
               
chrX:5679874-5679718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
141-306
               

               
Cow position:
               
chrX:6640483-6640648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
9, 60
               

               
Conread position:
               
141-309
               

               
Cow position:
               
chrX:23497634-23497470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
33, 87
               

               
Conread position:
               
141-311
               

               
Cow position:
               
chrX:17525810-17525648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
36, 88
               

               
Conread position:
               
141-324
               

               
Cow position:
               
chrX:6267719-6267909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
33, 48
               

               
Conread position:
               
141-331
               

               
Cow position:
               
chrX:51844-51653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
33, 89
               

               
Conread position:
               
141-338
               

               
Cow position:
               
chrX:14925329-14925528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
33, 174
               

               
Conread position:
               
145-308
               

               
Cow position:
               
chrX:22552918-22552753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
29, 138
               

               
Conread position:
               
145-312
               

               
Cow position:
               
chrX:4750271-4750108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
29, 51
               

               
Conread position:
               
145-322
               

               
Cow position:
               
chrX:29682050-29681878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
29, 85
               

               
Conread position:
               
145-325
               

               
Cow position:
               
chrX:11589306-11589127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
29, 107
               

               
Conread position:
               
146-322
               

               
Cow position:
               
chrX:11602421-11602246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
26, 14
               

               
Conread position:
               
146-328
               

               
Cow position:
               
chrX:37867494-37867682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
146-330
               

               
Cow position:
               
chrX:26882018-26881829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
147-323
               

               
Cow position:
               
chrX:48574294-48574113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
147-336
               

               
Cow position:
               
chrX:30042027-30041847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 10
               

               
Conread position:
               
149-325
               

               
Cow position:
               
chrX:39642557-39642387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
25, 33
               

               
Conread position:
               
149-328
               

               
Cow position:
               
chrX:4444486-4444674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
149-329
               

               
Cow position:
               
chrX:5487874-5487706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 80
               

               
Conread position:
               
150-322
               

               
Cow position:
               
chrX:10278936-10279115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 139
               

               
Conread position:
               
150-322
               

               
Cow position:
               
chrX:16801197-16801026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
61, 26
               

               
Conread position:
               
150-330
               

               
Cow position:
               
chrX:40556393-40556215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
24, 80
               

               
Conread position:
               
150-331
               

               
Cow position:
               
chrX:44040242-44040427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
24, 54
               

               
Conread position:
               
150-332
               

               
Cow position:
               
chrX:41010964-41011141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 66
               

               
Conread position:
               
150-338
               

               
Cow position:
               
chrX:1938080-1938267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
29, 80
               

               
Conread position:
               
151-340
               

               
Cow position:
               
chrX:41215389-41215585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
154-304
               

               
Cow position:
               
chrX:25420401-25420546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
20, 73
               

               
Conread position:
               
154-321
               

               
Cow position:
               
chrX:4486954-4486785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
154-338
               

               
Cow position:
               
chrX:35509609-35509420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
20, 75
               

               
Conread position:
               
155-314
               

               
Cow position:
               
chrX:3494974-3494818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
57, 22
               

               
Conread position:
               
155-318
               

               
Cow position:
               
chrX:33678402-33678234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
156-332
               

               
Cow position:
               
chrX:34194009-34193832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
157-309
               

               
Cow position:
               
chrX:13785149-13784985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
17, 108
               

               
Conread position:
               
157-331
               

               
Cow position:
               
chrX:11674183-11674362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
160-327
               

               
Cow position:
               
chrX:231942-231779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
13, 69
               

               
Conread position:
               
160-344
               

               
Cow position:
               
chrX:1571513-1571334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
19, 69
               

               
Conread position:
               
164-324
               

               
Cow position:
               
chrX:37717802-37717964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
169-327
               

               
Cow position:
               
chrX:40457474-40457320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
42, 36
               

               
Conread position:
               
170-329
               

               
Cow position:
               
chrX:42506862-42506699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
170-330
               

               
Cow position:
               
chrX:35390672-35390515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
41, 60
               

               
Conread position:
               
170-331
               

               
Cow position:
               
chrX:26720595-26720441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
42, 58
               

               
Conread position:
               
171-347
               

               
Cow position:
               
chrX:9367404-9367588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
41, 112
               

               
Conread position:
               
171-350
               

               
Cow position:
               
chrX:17929089-17929267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 64
               

               
Conread position:
               
173-310
               

               
Cow position:
               
chrX:11670776-11670915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
173-310
               

               
Cow position:
               
chrX:16323928-16323787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
173-310
               

               
Cow position:
               
chrX:45657850-45657707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
173-319
               

               
Cow position:
               
chrX:31279834-31279691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
39, 55
               

               
Conread position:
               
173-320
               

               
Cow position:
               
chrX:35029836-35029698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 55
               

               
Conread position:
               
173-321
               

               
Cow position:
               
chrX:1996362-1996212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
173-321
               

               
Cow position:
               
chrX:19356553-19356705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
173-321
               

               
Cow position:
               
chrX:39887124-39886972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
173-324
               

               
Cow position:
               
chrX:37176964-37177110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
38, 55
               

               
Conread position:
               
173-336
               

               
Cow position:
               
chrX:40108253-40108093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
173-337
               

               
Cow position:
               
chrX:43059161-43059002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
36, 50
               

               
Conread position:
               
173-351
               

               
Cow position:
               
chrX:43028322-43028500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
39, 55
               

               
Conread position:
               
174-328
               

               
Cow position:
               
chrX:42165523-42165372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
134, 29
               
UCSC Genome Browser

               
Conread position:
               
176-298
               

               
Cow position:
               
chrX:4366439-4366561 (view  custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
33, 50
               
UCSC Genome Browser

               
               
               
Conread position:
177-299

               
               
               
Cow position:
chrX:40583221-40583096 (view  custom track)

               
               
               
Alignm length:
126

               
               
               
Alignm identity:
98

               
               
               
Alignm E-value:
1e-21

               
               
               
Alignm gaps (pig, cow):
5, 0
UCSC Genome Browser

               
               
               
Conread position:
177-346

               
               
               
Cow position:
chrX:42216537-42216370 (view  custom track)

               
               
               
Alignm length:
171

               
               
               
Alignm identity:
131

               
               
               
Alignm E-value:
1e-30

               
               
               
Alignm gaps (pig, cow):
32, 55

               
               
               Conread position:178-306
               
               
               Cow position:chrX:10479844-10479974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:178-337
               
               
               Cow position:chrX:29723846-29724007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:179-321
               
               
               Cow position:chrX:42159037-42159180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):33, 136

               
               
               Conread position:180-332
               
               
               Cow position:chrX:41194002-41194153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 27

               
               
               Conread position:180-337
               
               
               Cow position:chrX:36962847-36963006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:181-346
               
               
               Cow position:chrX:47730580-47730746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 48

               
               
               Conread position:181-348
               
               
               Cow position:chrX:15534114-15533942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:183-342
               
               
               Cow position:chrX:783544-783705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:185-332
               
               
               Cow position:chrX:5063340-5063484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 99

               
               
               Conread position:189-321
               
               
               Cow position:chrX:38727032-38726905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 41

               
               
               Conread position:198-348
               
               
               Cow position:chrX:6855973-6856127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:206-334
               
               
               Cow position:chrX:32590282-32590154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 109

               
               
               Conread position:208-333
               
               
               Cow position:chrX:23185212-23185089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):21, 105

               
               
               Conread position:208-334
               
               
               Cow position:chrX:38080273-38080400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:209-335
               
               
               Cow position:chrX:3130770-3130898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 9

               
               
               Conread position:210-351
               
               
               Cow position:chrX:33740586-33740728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:228-338
               
               
               Cow position:chrX:22134875-22134765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0
Show alignments to all cow chromosomes.