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Cow genome map

           
Conread name:
           
recc2826c_a9.y1
        

               
Conread position:
               
91-313
               

               
Cow position:
               
chr28:27161052-27161275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
37, 47
               

               
Conread position:
               
94-313
               

               
Cow position:
               
chr28:2077766-2077551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
23, 18
               

               
Conread position:
               
99-311
               

               
Cow position:
               
chr28:12672208-12672412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
21, 12
               

               
Conread position:
               
101-268
               

               
Cow position:
               
chr28:4536770-4536592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
13, 21
               

               
Conread position:
               
101-313
               

               
Cow position:
               
chr28:3725957-3726158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
91, 14
               

               
Conread position:
               
102-308
               

               
Cow position:
               
chr28:7523164-7523360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
29, 15
               

               
Conread position:
               
107-313
               

               
Cow position:
               
chr28:10615702-10615895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
113-313
               

               
Cow position:
               
chr28:26826465-26826270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
150, 25
               

               
Conread position:
               
117-310
               

               
Cow position:
               
chr28:26943911-26944100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
42, 19
               

               
Conread position:
               
119-305
               

               
Cow position:
               
chr28:3257229-3257047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
40, 119
               

               
Conread position:
               
120-313
               

               
Cow position:
               
chr28:4866344-4866522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
122-311
               

               
Cow position:
               
chr28:21103586-21103775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
95, 26
               

               
Conread position:
               
123-297
               

               
Cow position:
               
chr28:23460378-23460209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
35, 19
               

               
Conread position:
               
123-312
               

               
Cow position:
               
chr28:18474887-18474699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
10, 125
               

               
Conread position:
               
123-313
               

               
Cow position:
               
chr28:24698923-24698741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
35, 10
               

               
Conread position:
               
124-310
               

               
Cow position:
               
chr28:751456-751281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
124-313
               

               
Cow position:
               
chr28:6934948-6935128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
124-313
               

               
Cow position:
               
chr28:11348657-11348474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
120, 8
               

               
Conread position:
               
124-313
               

               
Cow position:
               
chr28:29500638-29500451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
125-313
               

               
Cow position:
               
chr28:4282259-4282440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
126-313
               

               
Cow position:
               
chr28:10495068-10495250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 51
               

               
Conread position:
               
126-313
               

               
Cow position:
               
chr28:10763117-10762945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
128-312
               

               
Cow position:
               
chr28:12933511-12933678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
128-313
               

               
Cow position:
               
chr28:4307664-4307846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
128-313
               

               
Cow position:
               
chr28:22085319-22085491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
135-313
               

               
Cow position:
               
chr28:4016745-4016582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
136-305
               

               
Cow position:
               
chr28:23728090-23728246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
136-312
               

               
Cow position:
               
chr28:24646800-24646643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
136-313
               

               
Cow position:
               
chr28:8716163-8716337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
104, 13
               

               
Conread position:
               
136-313
               

               
Cow position:
               
chr28:28903334-28903509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
17, 94
               

               
Conread position:
               
137-305
               

               
Cow position:
               
chr28:14947936-14947774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
137-311
               

               
Cow position:
               
chr28:12964800-12964620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
90, 15
               

               
Conread position:
               
137-312
               

               
Cow position:
               
chr28:15295458-15295288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
40, 87
               

               
Conread position:
               
137-313
               

               
Cow position:
               
chr28:1632432-1632606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
105, 15
               

               
Conread position:
               
137-313
               

               
Cow position:
               
chr28:30293366-30293538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
107, 43
               

               
Conread position:
               
138-270
               

               
Cow position:
               
chr28:10896460-10896329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
138-296
               

               
Cow position:
               
chr28:8164998-8165148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
138-301
               

               
Cow position:
               
chr28:31841128-31841284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
33, 20
               

               
Conread position:
               
138-308
               

               
Cow position:
               
chr28:13174337-13174500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
138-310
               

               
Cow position:
               
chr28:29988890-29989056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
138-311
               

               
Cow position:
               
chr28:10252699-10252864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
138-311
               

               
Cow position:
               
chr28:16918954-16919116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
22, 85
               

               
Conread position:
               
138-311
               

               
Cow position:
               
chr28:27787783-27787619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
138-312
               

               
Cow position:
               
chr28:4834620-4834792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
22, 67
               

               
Conread position:
               
138-312
               

               
Cow position:
               
chr28:5138781-5138939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
138-312
               

               
Cow position:
               
chr28:5255089-5254926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
138-313
               

               
Cow position:
               
chr28:3423994-3423828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
138-313
               

               
Cow position:
               
chr28:3492568-3492733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
138-313
               

               
Cow position:
               
chr28:4159183-4159006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
138-313
               

               
Cow position:
               
chr28:5552491-5552664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
107, 22
               

               
Conread position:
               
138-313
               

               
Cow position:
               
chr28:8827385-8827211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
17, 87
               

               
Conread position:
               
138-313
               

               
Cow position:
               
chr28:9426131-9426299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
22, 88
               

               
Conread position:
               
138-313
               

               
Cow position:
               
chr28:11059710-11059551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
138-313
               

               
Cow position:
               
chr28:11079524-11079352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
15, 72
               

               
Conread position:
               
138-313
               

               
Cow position:
               
chr28:11411322-11411483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
138-313
               

               
Cow position:
               
chr28:11426330-11426490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
138-313
               

               
Cow position:
               
chr28:19038799-19038968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
138-313
               

               
Cow position:
               
chr28:20125000-20124836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
138-313
               

               
Cow position:
               
chr28:21868675-21868508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
109, 14
               

               
Conread position:
               
138-313
               

               
Cow position:
               
chr28:23616624-23616458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
138-313
               

               
Cow position:
               
chr28:24651398-24651555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
138-313
               

               
Cow position:
               
chr28:24966605-24966437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
136, 85
               

               
Conread position:
               
138-313
               

               
Cow position:
               
chr28:33884620-33884453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
24, 13
               

               
Conread position:
               
138-313
               

               
Cow position:
               
chr28:34230447-34230279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
139-296
               

               
Cow position:
               
chr28:16964749-16964900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
147, 16
               

               
Conread position:
               
139-310
               

               
Cow position:
               
chr28:13356148-13356317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
124, 95
               

               
Conread position:
               
139-311
               

               
Cow position:
               
chr28:117539-117710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
18, 86
               

               
Conread position:
               
139-311
               

               
Cow position:
               
chr28:118833-118662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 86
               

               
Conread position:
               
139-312
               

               
Cow position:
               
chr28:17948899-17949061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
139-312
               

               
Cow position:
               
chr28:32015004-32014836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
18, 82
               

               
Conread position:
               
139-313
               

               
Cow position:
               
chr28:4937021-4937191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
139-313
               

               
Cow position:
               
chr28:8936366-8936201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
139-313
               

               
Cow position:
               
chr28:9705874-9705701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
57, 97
               

               
Conread position:
               
139-313
               

               
Cow position:
               
chr28:10863582-10863741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
139-313
               

               
Cow position:
               
chr28:11305419-11305582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
139-313
               

               
Cow position:
               
chr28:11307300-11307467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
128, 49
               

               
Conread position:
               
139-313
               

               
Cow position:
               
chr28:16856891-16857056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
139-313
               

               
Cow position:
               
chr28:26982520-26982687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
10, 20
               

               
Conread position:
               
140-312
               

               
Cow position:
               
chr28:21263369-21263209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
123, 12
               

               
Conread position:
               
140-313
               

               
Cow position:
               
chr28:4186119-4185957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
140-313
               

               
Cow position:
               
chr28:8787757-8787591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
25, 84
               

               
Conread position:
               
140-313
               

               
Cow position:
               
chr28:13527415-13527245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
107, 44
               

               
Conread position:
               
141-313
               

               
Cow position:
               
chr28:7413876-7413710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
142-308
               

               
Cow position:
               
chr28:9285162-9285321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
142-313
               

               
Cow position:
               
chr28:3011052-3011220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
150, 89
               

               
Conread position:
               
142-313
               

               
Cow position:
               
chr28:7504097-7503929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 82
               

               
Conread position:
               
142-313
               

               
Cow position:
               
chr28:11562027-11562195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
15, 91
               

               
Conread position:
               
142-313
               

               
Cow position:
               
chr28:13474514-13474351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
61, 81
               

               
Conread position:
               
143-312
               

               
Cow position:
               
chr28:4588529-4588370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
15, 30
               

               
Conread position:
               
143-313
               

               
Cow position:
               
chr28:11346277-11346436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
143-313
               

               
Cow position:
               
chr28:19221923-19222100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
35, 111
               

               
Conread position:
               
143-313
               

               
Cow position:
               
chr28:28765689-28765852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
120, 41
               

               
Conread position:
               
144-309
               

               
Cow position:
               
chr28:32358317-32358162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
144-313
               

               
Cow position:
               
chr28:2825634-2825470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
144-313
               

               
Cow position:
               
chr28:7350862-7350705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
144-313
               

               
Cow position:
               
chr28:8655955-8656115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
145-305
               

               
Cow position:
               
chr28:18847773-18847616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
145-308
               

               
Cow position:
               
chr28:7131880-7132032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
145-313
               

               
Cow position:
               
chr28:2892470-2892303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 88
               

               
Conread position:
               
145-313
               

               
Cow position:
               
chr28:4022885-4022724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 35
               

               
Conread position:
               
145-313
               

               
Cow position:
               
chr28:6563680-6563846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
15, 89
               

               
Conread position:
               
145-313
               

               
Cow position:
               
chr28:7697765-7697931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 79
               

               
Conread position:
               
145-313
               

               
Cow position:
               
chr28:11309880-11310049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 27
               

               
Conread position:
               
145-313
               

               
Cow position:
               
chr28:11827903-11827736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
8, 90
               

               
Conread position:
               
145-313
               

               
Cow position:
               
chr28:21118894-21118728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
15, 97
               

               
Conread position:
               
145-313
               

               
Cow position:
               
chr28:24064680-24064847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
83, 42
               

               
Conread position:
               
146-311
               

               
Cow position:
               
chr28:14657927-14657766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
146-312
               

               
Cow position:
               
chr28:10203323-10203171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
146-312
               

               
Cow position:
               
chr28:25518545-25518713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
55, 38
               

               
Conread position:
               
147-313
               

               
Cow position:
               
chr28:4006991-4006835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
147-313
               

               
Cow position:
               
chr28:22332739-22332579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
148-301
               

               
Cow position:
               
chr28:22170073-22170217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
132, 77
               

               
Conread position:
               
148-302
               

               
Cow position:
               
chr28:7644950-7644804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
148-306
               

               
Cow position:
               
chr28:5724931-5725090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
108, 48
               

               
Conread position:
               
148-308
               

               
Cow position:
               
chr28:1825609-1825459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
148-308
               

               
Cow position:
               
chr28:3311010-3311168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
12, 86
               

               
Conread position:
               
148-308
               

               
Cow position:
               
chr28:4884044-4884197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
102, 75
               

               
Conread position:
               
148-310
               

               
Cow position:
               
chr28:5441688-5441844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
148-310
               

               
Cow position:
               
chr28:21008462-21008612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
148-310
               

               
Cow position:
               
chr28:26574609-26574464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
148-311
               

               
Cow position:
               
chr28:4071167-4071022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
148-311
               

               
Cow position:
               
chr28:8259841-8259681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
99, 83
               

               
Conread position:
               
148-311
               

               
Cow position:
               
chr28:8384081-8383914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
148-312
               

               
Cow position:
               
chr28:25057165-25057018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
148-313
               

               
Cow position:
               
chr28:3000096-3000275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
148-313
               

               
Cow position:
               
chr28:3494570-3494406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
148-313
               

               
Cow position:
               
chr28:3678568-3678413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
148-313
               

               
Cow position:
               
chr28:4013292-4013135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
148-313
               

               
Cow position:
               
chr28:4077127-4077295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
148-313
               

               
Cow position:
               
chr28:4163371-4163532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
148-313
               

               
Cow position:
               
chr28:4182210-4182052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
148-313
               

               
Cow position:
               
chr28:4643561-4643719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
148-313
               

               
Cow position:
               
chr28:4870587-4870754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
148-313
               

               
Cow position:
               
chr28:5577741-5577580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
102, 47
               

               
Conread position:
               
148-313
               

               
Cow position:
               
chr28:6301295-6301132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
12, 85
               

               
Conread position:
               
148-313
               

               
Cow position:
               
chr28:11828750-11828911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
148-313
               

               
Cow position:
               
chr28:13048075-13048233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 23
               

               
Conread position:
               
148-313
               

               
Cow position:
               
chr28:13370930-13371096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
148-313
               

               
Cow position:
               
chr28:17943933-17943781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
148-313
               

               
Cow position:
               
chr28:19564026-19564177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
148-313
               

               
Cow position:
               
chr28:26960705-26960858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
148-313
               

               
Cow position:
               
chr28:34877763-34877929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
82, 114
               

               
Conread position:
               
149-305
               

               
Cow position:
               
chr28:1838204-1838044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
149-311
               

               
Cow position:
               
chr28:2151232-2151387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
149-311
               

               
Cow position:
               
chr28:11398586-11398744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
149-313
               

               
Cow position:
               
chr28:4823809-4823655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
80, 38
               

               
Conread position:
               
149-313
               

               
Cow position:
               
chr28:5204393-5204246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
149-313
               

               
Cow position:
               
chr28:16879774-16879624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
149-313
               

               
Cow position:
               
chr28:17740033-17739873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
149-313
               

               
Cow position:
               
chr28:20174046-20173890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
151-313
               

               
Cow position:
               
chr28:7557521-7557683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
19, 95
               

               
Conread position:
               
152-280
               

               
Cow position:
               
chr28:18761803-18761926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
152-288
               

               
Cow position:
               
chr28:27941576-27941706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
152-305
               

               
Cow position:
               
chr28:16204125-16204275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
152-312
               

               
Cow position:
               
chr28:4876643-4876494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
152-312
               

               
Cow position:
               
chr28:11527054-11527207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
78, 68
               

               
Conread position:
               
152-313
               

               
Cow position:
               
chr28:5684905-5684754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
152-313
               

               
Cow position:
               
chr28:5805867-5805718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
152-313
               

               
Cow position:
               
chr28:8396530-8396386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
152-313
               

               
Cow position:
               
chr28:9636252-9636406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
38, 72
               

               
Conread position:
               
152-313
               

               
Cow position:
               
chr28:19262379-19262536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
152-313
               

               
Cow position:
               
chr28:27218530-27218374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
153-301
               

               
Cow position:
               
chr28:17620155-17620299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
153-305
               

               
Cow position:
               
chr28:3445275-3445423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
15, 75
               

               
Conread position:
               
153-307
               

               
Cow position:
               
chr28:133876-134029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
71, 31
               

               
Conread position:
               
153-309
               

               
Cow position:
               
chr28:21766159-21766010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
153-311
               

               
Cow position:
               
chr28:5236391-5236551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
153-311
               

               
Cow position:
               
chr28:11422615-11422763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
153-311
               

               
Cow position:
               
chr28:11798572-11798726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:659083-659244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
73, 63
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:777880-777726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
94, 73
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:2777734-2777581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:3410785-3410936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:3759201-3759041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:4089857-4090007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
156, 11
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:5144310-5144470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:5200031-5199875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:5436882-5437034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:5630303-5630149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:7532367-7532536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:8140688-8140533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:8347938-8347782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:10533123-10533269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:10978042-10977892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
154, 43
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:16200536-16200692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:16369885-16370032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:17680829-17680673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
110, 79
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:17737946-17738102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
47, 42
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:19024654-19024484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:20759489-20759650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
82, 144
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:21845155-21845008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:26820072-26820228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:29434203-29434377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:30902325-30902177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr28:34830358-34830205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
105, 32
               

               
Conread position:
               
154-308
               

               
Cow position:
               
chr28:2821464-2821314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
154-312
               

               
Cow position:
               
chr28:18770290-18770132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
73, 30
               

               
Conread position:
               
154-313
               

               
Cow position:
               
chr28:26867951-26868100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
154-313
               

               
Cow position:
               
chr28:30385358-30385203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
108, 66
               

               
Conread position:
               
155-313
               

               
Cow position:
               
chr28:12430808-12430656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
155-313
               

               
Cow position:
               
chr28:19994744-19994899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
108, 73
               

               
Conread position:
               
156-283
               

               
Cow position:
               
chr28:4375425-4375543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
123, 69
               

               
Conread position:
               
156-303
               

               
Cow position:
               
chr28:22278424-22278571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
156-313
               

               
Cow position:
               
chr28:12951617-12951468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
107, 67
               

               
Conread position:
               
157-294
               

               
Cow position:
               
chr28:10140386-10140513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
157-303
               

               
Cow position:
               
chr28:22346222-22346082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
157-313
               

               
Cow position:
               
chr28:20968376-20968529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
105, 84
               

               
Conread position:
               
157-313
               

               
Cow position:
               
chr28:24082470-24082321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
97, 71
               

               
Conread position:
               
158-305
               

               
Cow position:
               
chr28:22182934-22183082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
158-313
               

               
Cow position:
               
chr28:28501440-28501282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
159-309
               

               
Cow position:
               
chr28:5273229-5273375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
97, 72
               

               
Conread position:
               
159-313
               

               
Cow position:
               
chr28:25129082-25128937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
162-313
               

               
Cow position:
               
chr28:3264251-3264094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
65, 22
               

               
Conread position:
               
163-313
               

               
Cow position:
               
chr28:14998258-14998118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
164-313
               

               
Cow position:
               
chr28:4046037-4045895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
165-305
               

               
Cow position:
               
chr28:5711819-5711953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
165-310
               

               
Cow position:
               
chr28:18608173-18608314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
165-313
               

               
Cow position:
               
chr28:26531089-26531226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
166-313
               

               
Cow position:
               
chr28:26743822-26743677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
167-313
               

               
Cow position:
               
chr28:4166765-4166625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
170-313
               

               
Cow position:
               
chr28:19118159-19118020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
171-313
               

               
Cow position:
               
chr28:657279-657424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
171-313
               

               
Cow position:
               
chr28:4100578-4100708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
176-313
               

               
Cow position:
               
chr28:4138486-4138620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
182-313
               

               
Cow position:
               
chr28:2899173-2899040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
219-312
               

               
Cow position:
               
chr28:6971201-6971296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               
Show alignments to all cow chromosomes.