Cow genome map

Conread name: rece02_c23.y1

Conread position: 3-166
Cow position: chr10:8339325-8339168 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 133
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 53, 32

Conread position: 3-317
Cow position: chr10:31524228-31523913 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 33

Conread position: 3-321
Cow position: chr10:33347029-33346710 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 31

Conread position: 3-324
Cow position: chr10:24298428-24298747 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 42

Conread position: 3-338
Cow position: chr10:42629053-42628717 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 30

Conread position: 4-246
Cow position: chr10:54979043-54979279 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 41

Conread position: 5-186
Cow position: chr10:60490022-60489846 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 144
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 51, 40

Conread position: 5-268
Cow position: chr10:22843179-22842914 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 189
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 54, 43

Conread position: 5-324
Cow position: chr10:10415814-10415508 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 236
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 53, 30

Conread position: 5-324
Cow position: chr10:14860393-14860073 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 236
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 65, 40

Conread position: 5-324
Cow position: chr10:15861705-15862030 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 33

Conread position: 7-324
Cow position: chr10:49310913-49310611 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 32

Conread position: 14-329
Cow position: chr10:41351342-41351658 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 230
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 41, 31

Conread position: 17-323
Cow position: chr10:34317883-34318183 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 17

Conread position: 19-323
Cow position: chr10:38847757-38847466 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 221
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 37, 26

Conread position: 20-314
Cow position: chr10:20371565-20371855 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 216
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 25, 48

Conread position: 29-324
Cow position: chr10:38545817-38546120 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 41

Conread position: 40-306
Cow position: chr10:60192529-60192256 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 196
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 15, 86

Conread position: 44-324
Cow position: chr10:8327877-8328166 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 98

Conread position: 57-317
Cow position: chr10:53364339-53364077 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 181
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 197, 47

Conread position: 60-324
Cow position: chr10:23432186-23431916 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 184
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 187, 48

Conread position: 62-329
Cow position: chr10:11820705-11820435 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 183
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 185, 77

Conread position: 69-328
Cow position: chr10:14952236-14951981 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 192
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 204, 72

Conread position: 73-323
Cow position: chr10:2122899-2123154 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 192
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 179, 68

Conread position: 99-322
Cow position: chr10:41157784-41157557 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 42

Conread position: 99-323
Cow position: chr10:39817026-39817255 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 42

Conread position: 99-324
Cow position: chr10:4191889-4192126 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 187
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 113, 42

Conread position: 99-324
Cow position: chr10:14804173-14803942 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 40

Conread position: 99-324
Cow position: chr10:19495949-19496179 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 42

Conread position: 99-324
Cow position: chr10:21400334-21400564 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 42

Conread position: 99-324
Cow position: chr10:25564921-25565151 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 45

Conread position: 99-324
Cow position: chr10:39180120-39179891 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 42

Conread position: 99-324
Cow position: chr10:41567439-41567214 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 181
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 148, 24

Conread position: 99-324
Cow position: chr10:41877255-41877026 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 179
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 151, 42

Conread position: 100-324
Cow position: chr10:10477798-10478034 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 176
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 12, 46

Conread position: 100-324
Cow position: chr10:62778684-62778454 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 41

Conread position: 101-321
Cow position: chr10:31537599-31537376 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 162
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 147, 40

Conread position: 101-324
Cow position: chr10:29696566-29696343 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 182
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 147, 40

Conread position: 101-324
Cow position: chr10:34686229-34686000 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 178
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 80, 41

Conread position: 101-328
Cow position: chr10:25498687-25498455 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 40

Conread position: 102-324
Cow position: chr10:11685337-11685564 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 39

Conread position: 102-324
Cow position: chr10:46694044-46694269 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 174
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 145, 25

Conread position: 105-324
Cow position: chr10:39853678-39853907 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 181
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 7, 37

Conread position: 105-324
Cow position: chr10:40152122-40152347 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 7, 37

Conread position: 105-324
Cow position: chr10:62216939-62216713 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 179
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 7, 38

Conread position: 107-218
Cow position: chr10:68598963-68599073 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 9, 35

Conread position: 112-324
Cow position: chr10:19758672-19758458 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 29

Conread position: 112-324
Cow position: chr10:51952298-51952511 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 29

Conread position: 115-324
Cow position: chr10:47907099-47906885 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 30

Conread position: 116-324
Cow position: chr10:39040982-39041195 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 171
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 134, 25

Conread position: 118-314
Cow position: chr10:57989676-57989870 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 157
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 132, 18

Conread position: 118-324
Cow position: chr10:124628-124417 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 171
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 132, 23

Conread position: 118-324
Cow position: chr10:1375851-1375638 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 23

Conread position: 118-324
Cow position: chr10:8290296-8290090 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 168
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 132, 23

Conread position: 118-324
Cow position: chr10:16925853-16925643 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 23

Conread position: 118-324
Cow position: chr10:19511924-19511713 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 169
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 129, 23

Conread position: 118-324
Cow position: chr10:21487233-21487021 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 23

Conread position: 118-324
Cow position: chr10:22101548-22101339 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 165
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 132, 24

Conread position: 118-324
Cow position: chr10:25359717-25359506 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 23

Conread position: 118-324
Cow position: chr10:32651051-32650840 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 23

Conread position: 118-324
Cow position: chr10:38345044-38345255 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 170
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 130, 23

Conread position: 122-324
Cow position: chr10:13365556-13365763 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 166
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 128, 19

Conread position: 139-324
Cow position: chr10:38538194-38538390 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 156
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 58, 0

Conread position: 153-323
Cow position: chr10:24313551-24313727 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 90, 0

Conread position: 176-324
Cow position: chr10:29632601-29632756 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 72, 0

Conread position: 181-324
Cow position: chr10:19143081-19143230 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 69, 111

Conread position: 181-325
Cow position: chr10:55093496-55093347 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 124
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 66, 49

Show alignments to all cow chromosomes.