Cow genome map

Conread name: rece02_c23.y1

Conread position: 3-324
Cow position: chr11:8283144-8282822 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 43

Conread position: 3-324
Cow position: chr11:10090411-10090079 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 35

Conread position: 5-139
Cow position: chr11:30124969-30125104 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 92, 43

Conread position: 7-195
Cow position: chr11:10050777-10050593 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 14, 42

Conread position: 10-270
Cow position: chr11:7316931-7316673 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 196
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 47, 26

Conread position: 10-324
Cow position: chr11:17280241-17280549 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 122

Conread position: 24-322
Cow position: chr11:3240683-3240396 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 219
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 49, 8

Conread position: 38-329
Cow position: chr11:29233628-29233917 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 204
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 18, 36

Conread position: 38-329
Cow position: chr11:42429373-42429075 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 107

Conread position: 46-306
Cow position: chr11:4065199-4065471 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 205
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 9, 94

Conread position: 57-323
Cow position: chr11:17220198-17220475 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 84

Conread position: 70-324
Cow position: chr11:9606572-9606832 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 196
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 35, 14

Conread position: 70-324
Cow position: chr11:34020895-34020633 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 199
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 42, 72

Conread position: 77-324
Cow position: chr11:37065117-37065376 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 68

Conread position: 91-324
Cow position: chr11:12351081-12351320 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 51

Conread position: 97-324
Cow position: chr11:25527537-25527304 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 46

Conread position: 99-322
Cow position: chr11:19064274-19064502 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 42

Conread position: 99-324
Cow position: chr11:1496099-1496328 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 42

Conread position: 99-324
Cow position: chr11:3492986-3492756 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 42

Conread position: 99-324
Cow position: chr11:15983599-15983369 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 42

Conread position: 99-324
Cow position: chr11:17107711-17107941 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 42

Conread position: 99-324
Cow position: chr11:32450842-32450613 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 42

Conread position: 99-324
Cow position: chr11:38505630-38505859 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 42

Conread position: 99-324
Cow position: chr11:52419363-52419133 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 42

Conread position: 99-324
Cow position: chr11:53287481-53287710 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 181
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 153, 26

Conread position: 99-324
Cow position: chr11:57628071-57628301 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 42

Conread position: 99-324
Cow position: chr11:67450473-67450244 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 42

Conread position: 99-324
Cow position: chr11:67846596-67846826 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 42

Conread position: 101-251
Cow position: chr11:9659414-9659561 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 122
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 40, 0

Conread position: 101-324
Cow position: chr11:48085083-48084858 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 161
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 95, 38

Conread position: 102-323
Cow position: chr11:28063648-28063427 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 39

Conread position: 102-324
Cow position: chr11:8261732-8261958 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 39

Conread position: 102-324
Cow position: chr11:31413961-31414180 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 165
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 148, 37

Conread position: 104-323
Cow position: chr11:45111339-45111107 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 37

Conread position: 105-228
Cow position: chr11:8267572-8267694 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 7, 37

Conread position: 105-324
Cow position: chr11:21467047-21466822 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 175
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 7, 37

Conread position: 111-324
Cow position: chr11:8519952-8519738 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 173
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 73, 27

Conread position: 111-324
Cow position: chr11:8887195-8887411 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 30

Conread position: 112-323
Cow position: chr11:36744218-36744434 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 29

Conread position: 112-324
Cow position: chr11:37477157-37477374 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 29

Conread position: 112-324
Cow position: chr11:61401089-61401306 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 29

Conread position: 112-324
Cow position: chr11:64045960-64045743 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 29

Conread position: 112-324
Cow position: chr11:73477270-73477053 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 29

Conread position: 115-319
Cow position: chr11:4041117-4041321 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 26

Conread position: 116-324
Cow position: chr11:85393853-85394066 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 25

Conread position: 118-240
Cow position: chr11:53432110-53432230 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 103
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 23, 0

Conread position: 118-323
Cow position: chr11:23877258-23877049 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 23

Conread position: 118-323
Cow position: chr11:24393273-24393063 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 171
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 132, 24

Conread position: 118-323
Cow position: chr11:38835475-38835669 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 157
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 134, 23

Conread position: 118-324
Cow position: chr11:4270905-4271126 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 174
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 56, 23

Conread position: 118-324
Cow position: chr11:8244660-8244452 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 164
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 113, 23

Conread position: 118-324
Cow position: chr11:10847398-10847190 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 20

Conread position: 118-324
Cow position: chr11:11988063-11987852 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 174
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 132, 24

Conread position: 118-324
Cow position: chr11:28054644-28054854 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 170
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 134, 23

Conread position: 118-324
Cow position: chr11:29668675-29668883 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 169
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 134, 23

Conread position: 118-324
Cow position: chr11:37093106-37093316 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 172
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 132, 23

Conread position: 118-324
Cow position: chr11:43514674-43514885 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 23

Conread position: 118-324
Cow position: chr11:44157297-44157492 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 159
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 132, 23

Conread position: 118-324
Cow position: chr11:71329600-71329389 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 23

Conread position: 118-324
Cow position: chr11:72110009-72110220 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 23

Conread position: 118-329
Cow position: chr11:52886547-52886757 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 70, 18

Conread position: 119-324
Cow position: chr11:12358470-12358680 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 171
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 131, 22

Conread position: 119-324
Cow position: chr11:26124976-26125186 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 22

Conread position: 120-324
Cow position: chr11:19102532-19102741 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 165
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 130, 21

Conread position: 121-324
Cow position: chr11:9734694-9734902 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 170
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 11, 21

Conread position: 124-324
Cow position: chr11:28229803-28230009 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 17

Conread position: 125-324
Cow position: chr11:58134336-58134115 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 169
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 61, 19

Conread position: 126-324
Cow position: chr11:41170744-41170947 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 165
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 126, 15

Conread position: 142-324
Cow position: chr11:9157499-9157680 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 149
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 129, 77

Conread position: 145-317
Cow position: chr11:43732335-43732160 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 107, 55

Conread position: 167-324
Cow position: chr11:81852723-81852887 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 78, 0

Conread position: 168-324
Cow position: chr11:10210054-10210218 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 129
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 86, 0

Show alignments to all cow chromosomes.