Cow genome map
Conread name: | rece02_c23.y1 |
Conread position: | 3-324 |
Cow position: | chr11:8283144-8282822 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 43 |
Conread position: | 3-324 |
Cow position: | chr11:10090411-10090079 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 35 |
Conread position: | 5-139 |
Cow position: | chr11:30124969-30125104 (view UCSC Genome Browser custom track) |
Alignm length: | 139 |
Alignm identity: | 107 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 92, 43 |
Conread position: | 7-195 |
Cow position: | chr11:10050777-10050593 (view UCSC Genome Browser custom track) |
Alignm length: | 191 |
Alignm identity: | 139 |
Alignm E-value: | 8e-26 |
Alignm gaps (pig, cow): | 14, 42 |
Conread position: | 10-270 |
Cow position: | chr11:7316931-7316673 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 196 |
Alignm E-value: | 4.00001e-41 |
Alignm gaps (pig, cow): | 47, 26 |
Conread position: | 10-324 |
Cow position: | chr11:17280241-17280549 (view UCSC Genome Browser custom track) |
Alignm length: | 325 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 122 |
Conread position: | 24-322 |
Cow position: | chr11:3240683-3240396 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 219 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 49, 8 |
Conread position: | 38-329 |
Cow position: | chr11:29233628-29233917 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 204 |
Alignm E-value: | 7e-25 |
Alignm gaps (pig, cow): | 18, 36 |
Conread position: | 38-329 |
Cow position: | chr11:42429373-42429075 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 220 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 107 |
Conread position: | 46-306 |
Cow position: | chr11:4065199-4065471 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 205 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 9, 94 |
Conread position: | 57-323 |
Cow position: | chr11:17220198-17220475 (view UCSC Genome Browser custom track) |
Alignm length: | 280 |
Alignm identity: | 223 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 186, 84 |
Conread position: | 70-324 |
Cow position: | chr11:9606572-9606832 (view UCSC Genome Browser custom track) |
Alignm length: | 265 |
Alignm identity: | 196 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 35, 14 |
Conread position: | 70-324 |
Cow position: | chr11:34020895-34020633 (view UCSC Genome Browser custom track) |
Alignm length: | 265 |
Alignm identity: | 199 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 42, 72 |
Conread position: | 77-324 |
Cow position: | chr11:37065117-37065376 (view UCSC Genome Browser custom track) |
Alignm length: | 262 |
Alignm identity: | 204 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 68 |
Conread position: | 91-324 |
Cow position: | chr11:12351081-12351320 (view UCSC Genome Browser custom track) |
Alignm length: | 242 |
Alignm identity: | 189 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 51 |
Conread position: | 97-324 |
Cow position: | chr11:25527537-25527304 (view UCSC Genome Browser custom track) |
Alignm length: | 236 |
Alignm identity: | 184 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 46 |
Conread position: | 99-322 |
Cow position: | chr11:19064274-19064502 (view UCSC Genome Browser custom track) |
Alignm length: | 231 |
Alignm identity: | 186 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 42 |
Conread position: | 99-324 |
Cow position: | chr11:1496099-1496328 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 191 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 42 |
Conread position: | 99-324 |
Cow position: | chr11:3492986-3492756 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 187 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 42 |
Conread position: | 99-324 |
Cow position: | chr11:15983599-15983369 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 183 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 42 |
Conread position: | 99-324 |
Cow position: | chr11:17107711-17107941 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 183 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 42 |
Conread position: | 99-324 |
Cow position: | chr11:32450842-32450613 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 185 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 42 |
Conread position: | 99-324 |
Cow position: | chr11:38505630-38505859 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 183 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 144, 42 |
Conread position: | 99-324 |
Cow position: | chr11:52419363-52419133 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 181 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 42 |
Conread position: | 99-324 |
Cow position: | chr11:53287481-53287710 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 181 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 153, 26 |
Conread position: | 99-324 |
Cow position: | chr11:57628071-57628301 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 182 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 42 |
Conread position: | 99-324 |
Cow position: | chr11:67450473-67450244 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 183 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 149, 42 |
Conread position: | 99-324 |
Cow position: | chr11:67846596-67846826 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 190 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 42 |
Conread position: | 101-251 |
Cow position: | chr11:9659414-9659561 (view UCSC Genome Browser custom track) |
Alignm length: | 151 |
Alignm identity: | 122 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 40, 0 |
Conread position: | 101-324 |
Cow position: | chr11:48085083-48084858 (view UCSC Genome Browser custom track) |
Alignm length: | 231 |
Alignm identity: | 161 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 95, 38 |
Conread position: | 102-323 |
Cow position: | chr11:28063648-28063427 (view UCSC Genome Browser custom track) |
Alignm length: | 224 |
Alignm identity: | 179 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 39 |
Conread position: | 102-324 |
Cow position: | chr11:8261732-8261958 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 180 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 146, 39 |
Conread position: | 102-324 |
Cow position: | chr11:31413961-31414180 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 165 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 148, 37 |
Conread position: | 104-323 |
Cow position: | chr11:45111339-45111107 (view UCSC Genome Browser custom track) |
Alignm length: | 235 |
Alignm identity: | 187 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 146, 37 |
Conread position: | 105-228 |
Cow position: | chr11:8267572-8267694 (view UCSC Genome Browser custom track) |
Alignm length: | 125 |
Alignm identity: | 101 |
Alignm E-value: | 7e-25 |
Alignm gaps (pig, cow): | 7, 37 |
Conread position: | 105-324 |
Cow position: | chr11:21467047-21466822 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 175 |
Alignm E-value: | 4.00001e-41 |
Alignm gaps (pig, cow): | 7, 37 |
Conread position: | 111-324 |
Cow position: | chr11:8519952-8519738 (view UCSC Genome Browser custom track) |
Alignm length: | 222 |
Alignm identity: | 173 |
Alignm E-value: | 4.00001e-40 |
Alignm gaps (pig, cow): | 73, 27 |
Conread position: | 111-324 |
Cow position: | chr11:8887195-8887411 (view UCSC Genome Browser custom track) |
Alignm length: | 219 |
Alignm identity: | 178 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 135, 30 |
Conread position: | 112-323 |
Cow position: | chr11:36744218-36744434 (view UCSC Genome Browser custom track) |
Alignm length: | 219 |
Alignm identity: | 176 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 29 |
Conread position: | 112-324 |
Cow position: | chr11:37477157-37477374 (view UCSC Genome Browser custom track) |
Alignm length: | 220 |
Alignm identity: | 178 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 135, 29 |
Conread position: | 112-324 |
Cow position: | chr11:61401089-61401306 (view UCSC Genome Browser custom track) |
Alignm length: | 220 |
Alignm identity: | 180 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 135, 29 |
Conread position: | 112-324 |
Cow position: | chr11:64045960-64045743 (view UCSC Genome Browser custom track) |
Alignm length: | 220 |
Alignm identity: | 174 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 135, 29 |
Conread position: | 112-324 |
Cow position: | chr11:73477270-73477053 (view UCSC Genome Browser custom track) |
Alignm length: | 220 |
Alignm identity: | 175 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 135, 29 |
Conread position: | 115-319 |
Cow position: | chr11:4041117-4041321 (view UCSC Genome Browser custom track) |
Alignm length: | 207 |
Alignm identity: | 166 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 137, 26 |
Conread position: | 116-324 |
Cow position: | chr11:85393853-85394066 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 175 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 130, 25 |
Conread position: | 118-240 |
Cow position: | chr11:53432110-53432230 (view UCSC Genome Browser custom track) |
Alignm length: | 123 |
Alignm identity: | 103 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 23, 0 |
Conread position: | 118-323 |
Cow position: | chr11:23877258-23877049 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 174 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 130, 23 |
Conread position: | 118-323 |
Cow position: | chr11:24393273-24393063 (view UCSC Genome Browser custom track) |
Alignm length: | 213 |
Alignm identity: | 171 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 132, 24 |
Conread position: | 118-323 |
Cow position: | chr11:38835475-38835669 (view UCSC Genome Browser custom track) |
Alignm length: | 210 |
Alignm identity: | 157 |
Alignm E-value: | 9e-28 |
Alignm gaps (pig, cow): | 134, 23 |
Conread position: | 118-324 |
Cow position: | chr11:4270905-4271126 (view UCSC Genome Browser custom track) |
Alignm length: | 224 |
Alignm identity: | 174 |
Alignm E-value: | 3e-37 |
Alignm gaps (pig, cow): | 56, 23 |
Conread position: | 118-324 |
Cow position: | chr11:8244660-8244452 (view UCSC Genome Browser custom track) |
Alignm length: | 211 |
Alignm identity: | 164 |
Alignm E-value: | 4.00001e-41 |
Alignm gaps (pig, cow): | 113, 23 |
Conread position: | 118-324 |
Cow position: | chr11:10847398-10847190 (view UCSC Genome Browser custom track) |
Alignm length: | 211 |
Alignm identity: | 170 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 112, 20 |
Conread position: | 118-324 |
Cow position: | chr11:11988063-11987852 (view UCSC Genome Browser custom track) |
Alignm length: | 215 |
Alignm identity: | 174 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 132, 24 |
Conread position: | 118-324 |
Cow position: | chr11:28054644-28054854 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 170 |
Alignm E-value: | 5.00264e-43 |
Alignm gaps (pig, cow): | 134, 23 |
Conread position: | 118-324 |
Cow position: | chr11:29668675-29668883 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 169 |
Alignm E-value: | 4.00001e-41 |
Alignm gaps (pig, cow): | 134, 23 |
Conread position: | 118-324 |
Cow position: | chr11:37093106-37093316 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 172 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 132, 23 |
Conread position: | 118-324 |
Cow position: | chr11:43514674-43514885 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 174 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 23 |
Conread position: | 118-324 |
Cow position: | chr11:44157297-44157492 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 159 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 132, 23 |
Conread position: | 118-324 |
Cow position: | chr11:71329600-71329389 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 175 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 23 |
Conread position: | 118-324 |
Cow position: | chr11:72110009-72110220 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 172 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 130, 23 |
Conread position: | 118-329 |
Cow position: | chr11:52886547-52886757 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 156 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 70, 18 |
Conread position: | 119-324 |
Cow position: | chr11:12358470-12358680 (view UCSC Genome Browser custom track) |
Alignm length: | 213 |
Alignm identity: | 171 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 131, 22 |
Conread position: | 119-324 |
Cow position: | chr11:26124976-26125186 (view UCSC Genome Browser custom track) |
Alignm length: | 213 |
Alignm identity: | 172 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 117, 22 |
Conread position: | 120-324 |
Cow position: | chr11:19102532-19102741 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 165 |
Alignm E-value: | 4.00001e-40 |
Alignm gaps (pig, cow): | 130, 21 |
Conread position: | 121-324 |
Cow position: | chr11:9734694-9734902 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 170 |
Alignm E-value: | 6.02558e-44 |
Alignm gaps (pig, cow): | 11, 21 |
Conread position: | 124-324 |
Cow position: | chr11:28229803-28230009 (view UCSC Genome Browser custom track) |
Alignm length: | 209 |
Alignm identity: | 172 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 123, 17 |
Conread position: | 125-324 |
Cow position: | chr11:58134336-58134115 (view UCSC Genome Browser custom track) |
Alignm length: | 224 |
Alignm identity: | 169 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 61, 19 |
Conread position: | 126-324 |
Cow position: | chr11:41170744-41170947 (view UCSC Genome Browser custom track) |
Alignm length: | 206 |
Alignm identity: | 165 |
Alignm E-value: | 5.00264e-43 |
Alignm gaps (pig, cow): | 126, 15 |
Conread position: | 142-324 |
Cow position: | chr11:9157499-9157680 (view UCSC Genome Browser custom track) |
Alignm length: | 184 |
Alignm identity: | 149 |
Alignm E-value: | 4.99983e-42 |
Alignm gaps (pig, cow): | 129, 77 |
Conread position: | 145-317 |
Cow position: | chr11:43732335-43732160 (view UCSC Genome Browser custom track) |
Alignm length: | 180 |
Alignm identity: | 134 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 107, 55 |
Conread position: | 167-324 |
Cow position: | chr11:81852723-81852887 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 127 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 78, 0 |
Conread position: | 168-324 |
Cow position: | chr11:10210054-10210218 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 129 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 86, 0 |
Show alignments to all cow chromosomes.