Cow genome map
| Conread name: | rece02_c23.y1 |
| Conread position: | 3-233 |
| Cow position: | chr13:15451429-15451647 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 3-319 |
| Cow position: | chr13:20542242-20542557 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 42 |
| Conread position: | 13-324 |
| Cow position: | chr13:54284689-54284385 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 23 |
| Conread position: | 15-324 |
| Cow position: | chr13:34767177-34767472 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 17-194 |
| Cow position: | chr13:34111403-34111231 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 39, 28 |
| Conread position: | 20-330 |
| Cow position: | chr13:11764140-11764446 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 32, 57 |
| Conread position: | 29-329 |
| Cow position: | chr13:34937258-34936953 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 9 |
| Conread position: | 60-324 |
| Cow position: | chr13:49973769-49973495 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 14 |
| Conread position: | 69-324 |
| Cow position: | chr13:4178576-4178840 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 9, 5 |
| Conread position: | 70-324 |
| Cow position: | chr13:34142587-34142848 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 196 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 46, 72 |
| Conread position: | 73-324 |
| Cow position: | chr13:9044567-9044312 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 14 |
| Conread position: | 85-324 |
| Cow position: | chr13:4873134-4872888 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 59 |
| Conread position: | 99-307 |
| Cow position: | chr13:60466378-60466165 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-320 |
| Cow position: | chr13:34325632-34325859 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 44 |
| Conread position: | 99-324 |
| Cow position: | chr13:2296770-2296987 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 173, 46 |
| Conread position: | 99-324 |
| Cow position: | chr13:2388777-2389007 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr13:13324790-13324560 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr13:17308516-17308286 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 45 |
| Conread position: | 99-324 |
| Cow position: | chr13:21840153-21840383 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 101-323 |
| Cow position: | chr13:56730248-56730473 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 178 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 149, 40 |
| Conread position: | 101-324 |
| Cow position: | chr13:3277195-3276965 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 42 |
| Conread position: | 101-324 |
| Cow position: | chr13:31561226-31560999 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 102, 42 |
| Conread position: | 101-324 |
| Cow position: | chr13:31832636-31832411 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 147, 14 |
| Conread position: | 102-324 |
| Cow position: | chr13:34186649-34186874 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 148, 39 |
| Conread position: | 104-324 |
| Cow position: | chr13:34911342-34911567 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 8, 38 |
| Conread position: | 105-322 |
| Cow position: | chr13:33824699-33824918 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 105-323 |
| Cow position: | chr13:34693201-34692975 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 105-324 |
| Cow position: | chr13:30656941-30657163 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 105-324 |
| Cow position: | chr13:62327548-62327773 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 111-324 |
| Cow position: | chr13:3567823-3567594 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 136, 30 |
| Conread position: | 112-323 |
| Cow position: | chr13:35030579-35030368 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 135, 26 |
| Conread position: | 112-324 |
| Cow position: | chr13:32986029-32986246 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 29 |
| Conread position: | 112-324 |
| Cow position: | chr13:50109490-50109273 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 29 |
| Conread position: | 116-329 |
| Cow position: | chr13:16343194-16343405 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 136, 26 |
| Conread position: | 118-323 |
| Cow position: | chr13:4941110-4940900 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 118-323 |
| Cow position: | chr13:15520493-15520703 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 23 |
| Conread position: | 118-323 |
| Cow position: | chr13:35757263-35757053 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 118-324 |
| Cow position: | chr13:15924362-15924573 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr13:34042347-34042557 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 171 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-330 |
| Cow position: | chr13:3338810-3338592 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 102, 23 |
| Conread position: | 119-322 |
| Cow position: | chr13:2908428-2908637 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 167 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 49, 22 |
| Conread position: | 123-329 |
| Cow position: | chr13:6668106-6668317 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 123, 18 |
| Conread position: | 124-324 |
| Cow position: | chr13:1593139-1593344 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 17 |
| Conread position: | 125-324 |
| Cow position: | chr13:4483809-4483609 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 167 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 125, 16 |
| Conread position: | 136-324 |
| Cow position: | chr13:33336341-33336531 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 116, 27 |
| Conread position: | 136-324 |
| Cow position: | chr13:47229980-47230176 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 151-324 |
| Cow position: | chr13:23003527-23003704 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 94, 23 |
| Conread position: | 182-311 |
| Cow position: | chr13:30238078-30237942 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 189-324 |
| Cow position: | chr13:30244780-30244922 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
Show alignments to all cow chromosomes.