Cow genome map
| Conread name: | rece02_c23.y1 |
| Conread position: | 3-324 |
| Cow position: | chr14:35387139-35387460 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 42 |
| Conread position: | 3-324 |
| Cow position: | chr14:45303357-45303677 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 44 |
| Conread position: | 5-298 |
| Cow position: | chr14:12609189-12608895 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 29 |
| Conread position: | 5-306 |
| Cow position: | chr14:33675821-33675517 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 40 |
| Conread position: | 5-324 |
| Cow position: | chr14:22019398-22019082 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 31 |
| Conread position: | 5-324 |
| Cow position: | chr14:44580956-44580644 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 50, 40 |
| Conread position: | 5-332 |
| Cow position: | chr14:40339691-40339363 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 30 |
| Conread position: | 17-321 |
| Cow position: | chr14:47589860-47589559 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 156, 22 |
| Conread position: | 25-324 |
| Cow position: | chr14:37413905-37414200 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 7 |
| Conread position: | 36-324 |
| Cow position: | chr14:50110546-50110253 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 10, 39 |
| Conread position: | 38-323 |
| Cow position: | chr14:35929154-35928868 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 18, 88 |
| Conread position: | 42-320 |
| Cow position: | chr14:41407792-41407513 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 94 |
| Conread position: | 44-319 |
| Cow position: | chr14:9102149-9102404 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 38 |
| Conread position: | 44-323 |
| Cow position: | chr14:38146550-38146272 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 100 |
| Conread position: | 44-324 |
| Cow position: | chr14:31887653-31887364 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 12, 237 |
| Conread position: | 44-324 |
| Cow position: | chr14:47654711-47654422 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 84, 43 |
| Conread position: | 57-324 |
| Cow position: | chr14:48405730-48406001 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 190, 82 |
| Conread position: | 63-320 |
| Cow position: | chr14:44551839-44551573 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 28, 82 |
| Conread position: | 68-324 |
| Cow position: | chr14:46465022-46464758 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 42, 76 |
| Conread position: | 69-320 |
| Cow position: | chr14:44226345-44226090 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 10, 72 |
| Conread position: | 69-324 |
| Cow position: | chr14:16273345-16273608 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 201 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 34, 5 |
| Conread position: | 70-276 |
| Cow position: | chr14:45565280-45565064 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 33, 77 |
| Conread position: | 73-324 |
| Cow position: | chr14:15276637-15276893 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 68 |
| Conread position: | 76-323 |
| Cow position: | chr14:45161037-45160786 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 192 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 36, 21 |
| Conread position: | 77-329 |
| Cow position: | chr14:14309134-14309394 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 28, 106 |
| Conread position: | 78-317 |
| Cow position: | chr14:34775468-34775223 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 29, 67 |
| Conread position: | 93-324 |
| Cow position: | chr14:27992392-27992621 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 155, 35 |
| Conread position: | 99-324 |
| Cow position: | chr14:750487-750257 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr14:2284256-2284026 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr14:9045483-9045253 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr14:17491539-17491769 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr14:23257276-23257046 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr14:29047986-29048215 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 45 |
| Conread position: | 99-324 |
| Cow position: | chr14:33393859-33394089 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr14:43033976-43034201 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 144, 42 |
| Conread position: | 99-324 |
| Cow position: | chr14:45672128-45672357 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 101-319 |
| Cow position: | chr14:45770864-45771085 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 40 |
| Conread position: | 101-323 |
| Cow position: | chr14:44855512-44855738 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 40 |
| Conread position: | 101-323 |
| Cow position: | chr14:45205994-45205768 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 5, 42 |
| Conread position: | 101-324 |
| Cow position: | chr14:36968170-36967942 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 40 |
| Conread position: | 101-324 |
| Cow position: | chr14:45767917-45767689 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 149, 40 |
| Conread position: | 101-324 |
| Cow position: | chr14:45851137-45850911 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 180 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 147, 39 |
| Conread position: | 102-324 |
| Cow position: | chr14:44130827-44130602 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 125, 39 |
| Conread position: | 104-324 |
| Cow position: | chr14:13660074-13660301 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 50, 28 |
| Conread position: | 104-324 |
| Cow position: | chr14:47624465-47624247 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 144, 37 |
| Conread position: | 104-328 |
| Cow position: | chr14:5201169-5201398 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 144, 37 |
| Conread position: | 104-329 |
| Cow position: | chr14:44422466-44422236 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 37 |
| Conread position: | 105-323 |
| Cow position: | chr14:19620132-19619908 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 37 |
| Conread position: | 105-324 |
| Cow position: | chr14:7830628-7830853 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 176 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 105-324 |
| Cow position: | chr14:23690317-23690540 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 175 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 105-324 |
| Cow position: | chr14:38532380-38532606 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 11, 37 |
| Conread position: | 105-324 |
| Cow position: | chr14:41084869-41085095 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 108-323 |
| Cow position: | chr14:42123289-42123512 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 41, 28 |
| Conread position: | 112-324 |
| Cow position: | chr14:23900896-23901113 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 112-324 |
| Cow position: | chr14:30585048-30585264 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 16 |
| Conread position: | 112-324 |
| Cow position: | chr14:30596480-30596697 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 121, 30 |
| Conread position: | 112-324 |
| Cow position: | chr14:45917322-45917103 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 172 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 136, 29 |
| Conread position: | 116-323 |
| Cow position: | chr14:13273147-13272940 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 128, 25 |
| Conread position: | 118-323 |
| Cow position: | chr14:37223799-37223590 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 23 |
| Conread position: | 118-324 |
| Cow position: | chr14:5528960-5528749 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr14:11154268-11154478 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr14:13302926-13302718 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 132, 21 |
| Conread position: | 118-324 |
| Cow position: | chr14:13864184-13864396 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr14:16919792-16920003 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr14:17001161-17001367 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 173 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr14:17685295-17685083 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 23 |
| Conread position: | 118-324 |
| Cow position: | chr14:19328370-19328581 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 23 |
| Conread position: | 118-324 |
| Cow position: | chr14:20782354-20782144 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr14:22031789-22031998 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr14:28993956-28994167 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr14:44287352-44287563 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-325 |
| Cow position: | chr14:13479836-13480048 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 130, 23 |
| Conread position: | 118-325 |
| Cow position: | chr14:48254407-48254629 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 81, 23 |
| Conread position: | 118-338 |
| Cow position: | chr14:13778853-13778630 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 23 |
| Conread position: | 125-324 |
| Cow position: | chr14:5511713-5511510 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 165 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 125, 16 |
| Conread position: | 136-319 |
| Cow position: | chr14:23260044-23260229 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 112, 57 |
| Conread position: | 146-324 |
| Cow position: | chr14:48824455-48824270 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 150-327 |
| Cow position: | chr14:7472242-7472059 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 102, 165 |
| Conread position: | 180-323 |
| Cow position: | chr14:41755682-41755532 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 74, 0 |
Show alignments to all cow chromosomes.