Cow genome map

Conread name: rece02_c23.y1

Conread position: 3-324
Cow position: chr15:369678-369993 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 228
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 53, 31

Conread position: 3-324
Cow position: chr15:32679562-32679865 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 221
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 53, 36

Conread position: 3-324
Cow position: chr15:36642622-36642303 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 36

Conread position: 5-324
Cow position: chr15:12615072-12614757 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 233
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 61, 43

Conread position: 5-324
Cow position: chr15:35648231-35648542 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 43

Conread position: 5-330
Cow position: chr15:686530-686210 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 238
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 53, 40

Conread position: 8-314
Cow position: chr15:324943-324643 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 36

Conread position: 16-322
Cow position: chr15:36626671-36626981 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 32

Conread position: 17-323
Cow position: chr15:1237316-1237010 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 24

Conread position: 17-324
Cow position: chr15:17787169-17787478 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 225
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 39, 28

Conread position: 17-324
Cow position: chr15:24716216-24715915 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 229
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 40, 28

Conread position: 17-329
Cow position: chr15:15265662-15265971 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 28

Conread position: 20-324
Cow position: chr15:6622330-6622029 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 214
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 36, 25

Conread position: 26-324
Cow position: chr15:11624893-11624599 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 209
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 30, 16

Conread position: 34-221
Cow position: chr15:5544779-5544591 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 18, 51

Conread position: 36-324
Cow position: chr15:36648894-36648596 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 213
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 67, 12

Conread position: 38-251
Cow position: chr15:21449290-21449078 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 164
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 18, 104

Conread position: 38-319
Cow position: chr15:40105443-40105158 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 213
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 18, 64

Conread position: 42-324
Cow position: chr15:8408531-8408242 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 207
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 36, 72

Conread position: 42-324
Cow position: chr15:51672328-51672037 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 101

Conread position: 45-152
Cow position: chr15:51801673-51801566 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 13, 97

Conread position: 57-324
Cow position: chr15:24794012-24793737 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 206
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 40, 89

Conread position: 62-324
Cow position: chr15:20357332-20357596 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 180
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 185, 77

Conread position: 70-308
Cow position: chr15:8000280-8000527 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 188
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 33, 77

Conread position: 70-324
Cow position: chr15:7894284-7894541 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 197
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 180, 72

Conread position: 70-324
Cow position: chr15:7934282-7934039 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 190
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 33, 14

Conread position: 75-329
Cow position: chr15:35748237-35747977 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 67

Conread position: 97-324
Cow position: chr15:4196388-4196152 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 48

Conread position: 97-329
Cow position: chr15:7928541-7928303 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 170
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 27, 16

Conread position: 98-323
Cow position: chr15:4169778-4170009 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 180
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 8, 44

Conread position: 98-324
Cow position: chr15:3009931-3010162 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 43

Conread position: 99-323
Cow position: chr15:444527-444299 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 46

Conread position: 99-324
Cow position: chr15:1782173-1781943 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 180
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 148, 42

Conread position: 99-324
Cow position: chr15:1834542-1834771 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 42

Conread position: 99-324
Cow position: chr15:2012000-2011772 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 176
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 149, 42

Conread position: 99-324
Cow position: chr15:2647737-2647967 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 179
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 148, 42

Conread position: 99-324
Cow position: chr15:8099407-8099176 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 177
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 13, 43

Conread position: 99-324
Cow position: chr15:18268068-18268298 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 42

Conread position: 99-324
Cow position: chr15:28490222-28490452 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 42

Conread position: 99-324
Cow position: chr15:42320502-42320732 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 180
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 148, 42

Conread position: 100-324
Cow position: chr15:25789052-25789279 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 179
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 148, 44

Conread position: 101-324
Cow position: chr15:4682149-4681918 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 178
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 146, 40

Conread position: 101-324
Cow position: chr15:6369863-6370089 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 40

Conread position: 104-323
Cow position: chr15:4671342-4671118 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 176
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 69, 37

Conread position: 104-324
Cow position: chr15:2924800-2924578 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 38

Conread position: 104-324
Cow position: chr15:4142904-4143128 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 37

Conread position: 104-324
Cow position: chr15:7544795-7544569 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 173
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 144, 37

Conread position: 105-246
Cow position: chr15:5068764-5068624 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 117
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 7, 37

Conread position: 105-319
Cow position: chr15:17271483-17271703 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 170
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 7, 37

Conread position: 105-324
Cow position: chr15:4733772-4733548 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 37

Conread position: 105-324
Cow position: chr15:6078654-6078429 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 37

Conread position: 105-324
Cow position: chr15:7522580-7522804 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 179
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 7, 37

Conread position: 105-324
Cow position: chr15:10787215-10787440 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 37

Conread position: 105-324
Cow position: chr15:17292351-17292127 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 40

Conread position: 105-324
Cow position: chr15:21961421-21961196 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 176
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 7, 37

Conread position: 105-324
Cow position: chr15:23156929-23157141 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 162
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 7, 31

Conread position: 105-324
Cow position: chr15:25186049-25186255 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 7, 35

Conread position: 105-324
Cow position: chr15:29009753-29009532 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 179
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 11, 37

Conread position: 105-324
Cow position: chr15:53338937-53338718 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 37

Conread position: 111-324
Cow position: chr15:3037605-3037825 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 171
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 88, 30

Conread position: 111-324
Cow position: chr15:4649733-4649515 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 173
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 139, 30

Conread position: 111-324
Cow position: chr15:4961534-4961319 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 172
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 139, 30

Conread position: 112-320
Cow position: chr15:6593039-6593250 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 27

Conread position: 112-320
Cow position: chr15:50124036-50124246 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 170
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 135, 29

Conread position: 112-324
Cow position: chr15:690695-690479 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 168
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 136, 29

Conread position: 112-324
Cow position: chr15:4678382-4678166 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 171
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 138, 29

Conread position: 112-324
Cow position: chr15:17080296-17080512 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 29

Conread position: 112-324
Cow position: chr15:20749321-20749104 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 29

Conread position: 112-324
Cow position: chr15:36970830-36970613 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 29

Conread position: 112-324
Cow position: chr15:50146984-50146767 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 29

Conread position: 115-324
Cow position: chr15:1763992-1763781 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 168
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 139, 26

Conread position: 115-324
Cow position: chr15:41366077-41365869 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 167
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 132, 26

Conread position: 116-324
Cow position: chr15:7260527-7260316 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 169
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 123, 25

Conread position: 118-314
Cow position: chr15:18576613-18576412 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 23

Conread position: 118-322
Cow position: chr15:19738154-19738362 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 169
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 125, 23

Conread position: 118-323
Cow position: chr15:31358785-31358576 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 169
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 132, 23

Conread position: 118-324
Cow position: chr15:4385167-4384956 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 170
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 130, 23

Conread position: 118-324
Cow position: chr15:4765104-4764894 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 161
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 134, 17

Conread position: 118-324
Cow position: chr15:7837143-7836932 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 23

Conread position: 118-324
Cow position: chr15:15347220-15347431 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 23

Conread position: 118-324
Cow position: chr15:18332929-18333138 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 23

Conread position: 118-324
Cow position: chr15:21665847-21666058 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 166
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 134, 23

Conread position: 118-324
Cow position: chr15:24294991-24294780 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 23

Conread position: 118-324
Cow position: chr15:32494487-32494697 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 163
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 125, 21

Conread position: 118-324
Cow position: chr15:35753699-35753909 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 171
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 132, 23

Conread position: 118-324
Cow position: chr15:42936613-42936402 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 169
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 132, 23

Conread position: 118-324
Cow position: chr15:44069822-44069611 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 23

Conread position: 118-324
Cow position: chr15:51216488-51216278 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 170
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 129, 23

Conread position: 118-325
Cow position: chr15:4922050-4921831 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 173
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 105, 23

Conread position: 118-329
Cow position: chr15:42491103-42490887 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 173
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 129, 21

Conread position: 119-324
Cow position: chr15:6156055-6156265 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 169
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 131, 22

Conread position: 119-324
Cow position: chr15:6553957-6554166 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 22

Conread position: 120-324
Cow position: chr15:12421268-12421477 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 163
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 127, 21

Conread position: 137-324
Cow position: chr15:14582734-14582929 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 151
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 13, 0

Conread position: 143-323
Cow position: chr15:35735332-35735145 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 150
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 105, 0

Conread position: 146-324
Cow position: chr15:38979792-38979608 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 100, 29

Conread position: 147-324
Cow position: chr15:3261543-3261718 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 128, 28

Conread position: 166-324
Cow position: chr15:22920979-22920814 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 138
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 81, 0

Show alignments to all cow chromosomes.