Cow genome map
| Conread name: | rece02_c23.y1 |
| Conread position: | 2-324 |
| Cow position: | chr16:42739759-42740081 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 32 |
| Conread position: | 3-197 |
| Cow position: | chr16:5889581-5889393 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 24 |
| Conread position: | 3-221 |
| Cow position: | chr16:25257267-25257055 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 169 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 55, 42 |
| Conread position: | 3-241 |
| Cow position: | chr16:16273170-16273403 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 76, 45 |
| Conread position: | 3-321 |
| Cow position: | chr16:49235485-49235803 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 30 |
| Conread position: | 4-288 |
| Cow position: | chr16:29033379-29033094 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 29 |
| Conread position: | 4-324 |
| Cow position: | chr16:25156556-25156879 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 26 |
| Conread position: | 5-310 |
| Cow position: | chr16:335947-335645 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 226 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 51, 31 |
| Conread position: | 5-324 |
| Cow position: | chr16:9930197-9929882 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 29 |
| Conread position: | 5-324 |
| Cow position: | chr16:49256920-49257241 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 30 |
| Conread position: | 19-324 |
| Cow position: | chr16:31375633-31375934 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 26 |
| Conread position: | 25-323 |
| Cow position: | chr16:33611433-33611737 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 20 |
| Conread position: | 42-324 |
| Cow position: | chr16:18499723-18500006 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 100 |
| Conread position: | 44-321 |
| Cow position: | chr16:44966785-44966517 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 199, 12 |
| Conread position: | 45-302 |
| Cow position: | chr16:52814864-52815124 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 200 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 11, 71 |
| Conread position: | 54-319 |
| Cow position: | chr16:16030402-16030132 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 63-308 |
| Cow position: | chr16:30048101-30047850 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 80, 113 |
| Conread position: | 67-324 |
| Cow position: | chr16:25188248-25187984 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 70-328 |
| Cow position: | chr16:36283001-36282738 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 75 |
| Conread position: | 73-324 |
| Cow position: | chr16:2411371-2411628 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 69 |
| Conread position: | 73-324 |
| Cow position: | chr16:2483546-2483802 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 157, 14 |
| Conread position: | 73-324 |
| Cow position: | chr16:29046619-29046363 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 40, 9 |
| Conread position: | 76-323 |
| Cow position: | chr16:41560245-41560001 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 174, 65 |
| Conread position: | 77-328 |
| Cow position: | chr16:39821227-39820969 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 68 |
| Conread position: | 80-272 |
| Cow position: | chr16:25153312-25153124 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 167, 9 |
| Conread position: | 94-324 |
| Cow position: | chr16:29983012-29982786 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 156, 47 |
| Conread position: | 97-323 |
| Cow position: | chr16:31592333-31592562 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 180 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 20, 45 |
| Conread position: | 98-221 |
| Cow position: | chr16:29675807-29675928 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 99-323 |
| Cow position: | chr16:5661421-5661192 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 42 |
| Conread position: | 99-324 |
| Cow position: | chr16:32309-32081 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 42 |
| Conread position: | 99-324 |
| Cow position: | chr16:28170792-28171021 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 153, 42 |
| Conread position: | 100-324 |
| Cow position: | chr16:25085191-25084962 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 148, 41 |
| Conread position: | 101-323 |
| Cow position: | chr16:41757879-41758105 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 152, 38 |
| Conread position: | 101-324 |
| Cow position: | chr16:51686004-51685778 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 146, 38 |
| Conread position: | 103-324 |
| Cow position: | chr16:56551688-56551467 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 39 |
| Conread position: | 104-322 |
| Cow position: | chr16:11052726-11052505 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 107, 37 |
| Conread position: | 105-324 |
| Cow position: | chr16:6548958-6549183 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 178 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 6, 37 |
| Conread position: | 105-324 |
| Cow position: | chr16:20254745-20254970 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 116-324 |
| Cow position: | chr16:5919037-5918824 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 25 |
| Conread position: | 118-321 |
| Cow position: | chr16:43897719-43897923 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 166 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 134, 23 |
| Conread position: | 118-323 |
| Cow position: | chr16:15492261-15492050 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 127, 23 |
| Conread position: | 118-323 |
| Cow position: | chr16:23252955-23253163 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 118-324 |
| Cow position: | chr16:407479-407693 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 172 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 130, 23 |
| Conread position: | 118-324 |
| Cow position: | chr16:1567902-1568113 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 118-324 |
| Cow position: | chr16:5483875-5483664 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 28 |
| Conread position: | 118-324 |
| Cow position: | chr16:8816552-8816763 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr16:9777637-9777424 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 23 |
| Conread position: | 118-324 |
| Cow position: | chr16:10203878-10204089 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 23 |
| Conread position: | 118-324 |
| Cow position: | chr16:12538373-12538582 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr16:14666277-14666488 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr16:15184355-15184145 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 123, 23 |
| Conread position: | 118-324 |
| Cow position: | chr16:15566296-15566091 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 118-324 |
| Cow position: | chr16:23982862-23982652 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 17 |
| Conread position: | 118-324 |
| Cow position: | chr16:25341517-25341306 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr16:25441176-25440959 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 77, 23 |
| Conread position: | 118-324 |
| Cow position: | chr16:25457913-25458130 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 77, 23 |
| Conread position: | 118-324 |
| Cow position: | chr16:26663301-26663089 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 119-324 |
| Cow position: | chr16:836580-836370 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 169 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 133, 22 |
| Conread position: | 122-320 |
| Cow position: | chr16:27734253-27734458 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 169 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 5, 20 |
| Conread position: | 125-324 |
| Cow position: | chr16:10437788-10437584 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 167 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 125, 16 |
| Conread position: | 125-324 |
| Cow position: | chr16:40296633-40296837 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 164 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 125, 16 |
| Conread position: | 142-324 |
| Cow position: | chr16:42050857-42051040 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 104, 135 |
| Conread position: | 155-324 |
| Cow position: | chr16:2239215-2239392 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 167-324 |
| Cow position: | chr16:36232110-36232269 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 80, 0 |
Show alignments to all cow chromosomes.