Cow genome map
| Conread name: | rece02_c23.y1 |
| Conread position: | 3-319 |
| Cow position: | chr17:15371290-15370973 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 33 |
| Conread position: | 4-329 |
| Cow position: | chr17:14325272-14325589 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 29 |
| Conread position: | 5-323 |
| Cow position: | chr17:4081876-4081561 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 30 |
| Conread position: | 5-324 |
| Cow position: | chr17:20401898-20401594 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 53, 10 |
| Conread position: | 6-324 |
| Cow position: | chr17:4295581-4295269 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 47 |
| Conread position: | 6-328 |
| Cow position: | chr17:42264738-42264419 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 236 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 209, 41 |
| Conread position: | 44-246 |
| Cow position: | chr17:1658360-1658564 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 12, 98 |
| Conread position: | 60-324 |
| Cow position: | chr17:152289-152563 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 182, 9 |
| Conread position: | 60-324 |
| Cow position: | chr17:15435983-15435710 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 22 |
| Conread position: | 77-324 |
| Cow position: | chr17:35592389-35592132 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 68 |
| Conread position: | 84-324 |
| Cow position: | chr17:20087583-20087813 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 99-324 |
| Cow position: | chr17:181512-181282 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr17:228159-228384 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 151, 42 |
| Conread position: | 99-324 |
| Cow position: | chr17:8209255-8209025 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr17:15143218-15143448 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr17:15156815-15157044 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 42 |
| Conread position: | 99-324 |
| Cow position: | chr17:20665577-20665807 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr17:23324305-23324535 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 100-267 |
| Cow position: | chr17:22557770-22557599 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 84, 41 |
| Conread position: | 101-324 |
| Cow position: | chr17:602291-602505 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 172, 40 |
| Conread position: | 101-324 |
| Cow position: | chr17:2287533-2287305 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 177 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 149, 40 |
| Conread position: | 101-324 |
| Cow position: | chr17:13856622-13856850 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 147, 40 |
| Conread position: | 101-324 |
| Cow position: | chr17:18026610-18026838 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 40 |
| Conread position: | 105-324 |
| Cow position: | chr17:1880238-1880011 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 180 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 7, 35 |
| Conread position: | 105-324 |
| Cow position: | chr17:1947113-1946895 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 171 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 105-324 |
| Cow position: | chr17:2174022-2173798 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 8, 35 |
| Conread position: | 105-324 |
| Cow position: | chr17:4060243-4060021 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 105-324 |
| Cow position: | chr17:18185391-18185614 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 105-324 |
| Cow position: | chr17:22429344-22429564 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 7, 132 |
| Conread position: | 105-324 |
| Cow position: | chr17:23856890-23857115 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 105-324 |
| Cow position: | chr17:43988677-43988456 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 41 |
| Conread position: | 111-324 |
| Cow position: | chr17:20183097-20183311 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 139, 29 |
| Conread position: | 111-324 |
| Cow position: | chr17:27345935-27345721 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 30 |
| Conread position: | 112-324 |
| Cow position: | chr17:1382678-1382895 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 112-324 |
| Cow position: | chr17:6089025-6089242 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 112-324 |
| Cow position: | chr17:24634090-24633873 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 114-324 |
| Cow position: | chr17:9653322-9653537 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 27 |
| Conread position: | 118-324 |
| Cow position: | chr17:2579745-2579544 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr17:3642706-3642917 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 169 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr17:6259974-6259764 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr17:11087594-11087805 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 118-324 |
| Cow position: | chr17:13929798-13929587 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 118-324 |
| Cow position: | chr17:14894283-14894080 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 153, 23 |
| Conread position: | 118-324 |
| Cow position: | chr17:15850527-15850315 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 23 |
| Conread position: | 118-324 |
| Cow position: | chr17:18103555-18103761 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr17:19269236-19269447 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 130, 23 |
| Conread position: | 118-324 |
| Cow position: | chr17:25737793-25737582 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr17:40804947-40804735 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 21 |
| Conread position: | 119-251 |
| Cow position: | chr17:15323374-15323246 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 119-323 |
| Cow position: | chr17:14216894-14217104 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 171 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 127, 22 |
| Conread position: | 125-324 |
| Cow position: | chr17:2588426-2588230 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 125, 16 |
| Conread position: | 128-324 |
| Cow position: | chr17:16859448-16859637 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 115, 13 |
| Conread position: | 131-324 |
| Cow position: | chr17:2556239-2556042 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 10 |
| Conread position: | 154-324 |
| Cow position: | chr17:26205711-26205888 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 165-329 |
| Cow position: | chr17:39933742-39933572 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 189-324 |
| Cow position: | chr17:24781109-24780967 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 58, 0 |
Show alignments to all cow chromosomes.