Cow genome map

Conread name: rece02_c23.y1

Conread position: 2-324
Cow position: chr2:16289121-16288801 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 44

Conread position: 3-251
Cow position: chr2:41149892-41149645 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 191
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 52, 32

Conread position: 3-317
Cow position: chr2:36030845-36031153 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 11

Conread position: 3-322
Cow position: chr2:34565036-34565352 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 231
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 247, 45

Conread position: 3-323
Cow position: chr2:28620943-28621252 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 31

Conread position: 3-324
Cow position: chr2:1672776-1673093 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 31

Conread position: 3-324
Cow position: chr2:7902174-7901856 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 49

Conread position: 3-324
Cow position: chr2:14822398-14822074 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 33

Conread position: 3-324
Cow position: chr2:28643238-28643551 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 42

Conread position: 3-324
Cow position: chr2:36053756-36054080 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 42

Conread position: 3-324
Cow position: chr2:39622195-39621861 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 51

Conread position: 3-332
Cow position: chr2:15577675-15577999 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 31

Conread position: 4-324
Cow position: chr2:2356577-2356901 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 245
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 54, 37

Conread position: 4-324
Cow position: chr2:51304840-51305162 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 106

Conread position: 14-324
Cow position: chr2:75676030-75676333 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 226
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 42, 31

Conread position: 17-212
Cow position: chr2:73191831-73191643 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 57, 27

Conread position: 19-324
Cow position: chr2:7211577-7211274 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 28

Conread position: 29-177
Cow position: chr2:24393294-24393442 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 27, 113

Conread position: 33-330
Cow position: chr2:3749789-3749474 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 213
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 6, 84

Conread position: 36-323
Cow position: chr2:5870489-5870765 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 203
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 72, 25

Conread position: 36-324
Cow position: chr2:44935222-44935514 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 38

Conread position: 38-314
Cow position: chr2:63292699-63292983 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 211
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 18, 65

Conread position: 42-324
Cow position: chr2:28747318-28747036 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 207
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 14, 58

Conread position: 44-247
Cow position: chr2:41147105-41146904 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 140
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 11, 39

Conread position: 44-324
Cow position: chr2:59963371-59963656 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 198
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 12, 61

Conread position: 46-314
Cow position: chr2:74391247-74391533 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 205
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 10, 94

Conread position: 54-324
Cow position: chr2:19010081-19009806 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 203
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 33, 22

Conread position: 56-353
Cow position: chr2:28616362-28616662 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 85

Conread position: 69-322
Cow position: chr2:5813549-5813823 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 195
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 10, 0

Conread position: 73-324
Cow position: chr2:10268831-10269087 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 192
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 177, 68

Conread position: 73-324
Cow position: chr2:11159298-11159553 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 68

Conread position: 73-324
Cow position: chr2:81256633-81256391 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 189
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 14, 0

Conread position: 76-328
Cow position: chr2:290007-290262 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 180
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 176, 37

Conread position: 77-324
Cow position: chr2:26921522-26921269 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 65

Conread position: 83-328
Cow position: chr2:78762291-78762042 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 192
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 15, 60

Conread position: 92-322
Cow position: chr2:49604527-49604291 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 174
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 11, 50

Conread position: 96-338
Cow position: chr2:3837204-3837437 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 45

Conread position: 97-323
Cow position: chr2:45213479-45213715 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 185
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 6, 45

Conread position: 97-324
Cow position: chr2:41686323-41686089 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 46

Conread position: 99-321
Cow position: chr2:2380910-2380687 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 179
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 148, 42

Conread position: 99-324
Cow position: chr2:212418-212647 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 42

Conread position: 99-324
Cow position: chr2:9907716-9907486 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 42

Conread position: 99-324
Cow position: chr2:10611823-10612053 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 42

Conread position: 99-324
Cow position: chr2:25030673-25030902 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 42

Conread position: 99-324
Cow position: chr2:39421382-39421151 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 42

Conread position: 99-324
Cow position: chr2:41656885-41656656 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 180
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 148, 42

Conread position: 99-324
Cow position: chr2:44091104-44090873 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 179
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 143, 43

Conread position: 99-324
Cow position: chr2:59413877-59414107 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 42

Conread position: 100-324
Cow position: chr2:41172482-41172251 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 43

Conread position: 100-324
Cow position: chr2:42333488-42333722 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 175
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 128, 41

Conread position: 100-324
Cow position: chr2:80516862-80516642 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 140, 41

Conread position: 101-322
Cow position: chr2:82167410-82167184 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 178
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 147, 40

Conread position: 101-324
Cow position: chr2:2101669-2101897 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 177
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 149, 40

Conread position: 101-325
Cow position: chr2:6772371-6772599 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 179
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 147, 40

Conread position: 102-324
Cow position: chr2:78741933-78741703 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 179
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 97, 39

Conread position: 104-324
Cow position: chr2:422866-422645 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 38

Conread position: 104-324
Cow position: chr2:6960545-6960319 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 172
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 108, 37

Conread position: 105-322
Cow position: chr2:16076498-16076721 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 174
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 7, 41

Conread position: 105-324
Cow position: chr2:5905065-5905288 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 180
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 7, 38

Conread position: 105-324
Cow position: chr2:10843553-10843776 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 36

Conread position: 105-324
Cow position: chr2:32655134-32654908 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 37

Conread position: 105-324
Cow position: chr2:44346513-44346289 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 177
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 142, 36

Conread position: 105-324
Cow position: chr2:46946465-46946241 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 176
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 7, 37

Conread position: 105-329
Cow position: chr2:2363982-2363752 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 178
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 11, 37

Conread position: 105-338
Cow position: chr2:5485454-5485693 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 177
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 13, 27

Conread position: 111-324
Cow position: chr2:4404557-4404774 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 30

Conread position: 111-324
Cow position: chr2:44106318-44106536 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 30

Conread position: 112-320
Cow position: chr2:5474306-5474093 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 29

Conread position: 112-322
Cow position: chr2:57334986-57334772 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 13

Conread position: 112-324
Cow position: chr2:2184466-2184683 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 29

Conread position: 112-324
Cow position: chr2:2413006-2413223 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 29

Conread position: 112-324
Cow position: chr2:3324774-3324991 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 29

Conread position: 112-324
Cow position: chr2:57141896-57142113 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 29

Conread position: 112-324
Cow position: chr2:67419509-67419726 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 29

Conread position: 112-324
Cow position: chr2:80955846-80956063 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 29

Conread position: 115-324
Cow position: chr2:14560967-14560759 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 163
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 89, 27

Conread position: 115-324
Cow position: chr2:51990743-51990957 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 26

Conread position: 118-324
Cow position: chr2:10186449-10186660 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 169
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 134, 23

Conread position: 118-324
Cow position: chr2:16900033-16899820 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 174
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 119, 23

Conread position: 118-324
Cow position: chr2:24922184-24921972 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 169
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 38, 23

Conread position: 118-324
Cow position: chr2:28650447-28650654 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 165
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 130, 23

Conread position: 118-324
Cow position: chr2:28793035-28792824 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 170
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 132, 23

Conread position: 118-324
Cow position: chr2:42671604-42671814 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 167
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 125, 23

Conread position: 118-324
Cow position: chr2:47810797-47810584 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 172
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 82, 21

Conread position: 118-324
Cow position: chr2:50077380-50077169 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 167
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 55, 23

Conread position: 118-324
Cow position: chr2:50983445-50983655 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 23

Conread position: 118-324
Cow position: chr2:52062451-52062240 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 23

Conread position: 118-324
Cow position: chr2:53329530-53329319 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 23

Conread position: 118-324
Cow position: chr2:65938666-65938876 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 167
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 132, 23

Conread position: 120-324
Cow position: chr2:4926394-4926603 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 168
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 124, 21

Conread position: 122-323
Cow position: chr2:10711656-10711862 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 165
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 126, 19

Conread position: 123-324
Cow position: chr2:282913-283119 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 165
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 129, 18

Conread position: 124-324
Cow position: chr2:35353147-35352939 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 111, 0

Conread position: 145-324
Cow position: chr2:85356019-85356198 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 105, 25

Conread position: 182-324
Cow position: chr2:54649100-54649249 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 70, 0

Conread position: 186-324
Cow position: chr2:6638855-6638710 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 61, 0

Conread position: 196-324
Cow position: chr2:10729849-10729983 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 197-323
Cow position: chr2:56438024-56438152 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 50, 0

Show alignments to all cow chromosomes.