Cow genome map
| Conread name: | rece02_c23.y1 |
| Conread position: | 3-229 |
| Cow position: | chr22:3306375-3306598 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 103, 45 |
| Conread position: | 3-323 |
| Cow position: | chr22:13917861-13917538 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 46 |
| Conread position: | 3-324 |
| Cow position: | chr22:1283300-1283616 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 33 |
| Conread position: | 3-324 |
| Cow position: | chr22:11031318-11030994 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 45 |
| Conread position: | 3-324 |
| Cow position: | chr22:44609943-44609630 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 11 |
| Conread position: | 4-321 |
| Cow position: | chr22:6503321-6503640 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 44 |
| Conread position: | 7-306 |
| Cow position: | chr22:23853683-23853383 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 28 |
| Conread position: | 17-321 |
| Cow position: | chr22:7277860-7277558 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 18 |
| Conread position: | 27-324 |
| Cow position: | chr22:1321924-1321641 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 218 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 12, 41 |
| Conread position: | 36-324 |
| Cow position: | chr22:117512-117808 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 12 |
| Conread position: | 36-324 |
| Cow position: | chr22:5308430-5308136 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 25 |
| Conread position: | 42-324 |
| Cow position: | chr22:310095-309812 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 16, 69 |
| Conread position: | 44-319 |
| Cow position: | chr22:15956390-15956660 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 44-324 |
| Cow position: | chr22:1048721-1048440 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 46 |
| Conread position: | 46-323 |
| Cow position: | chr22:34598979-34598703 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 12, 47 |
| Conread position: | 49-324 |
| Cow position: | chr22:41238482-41238207 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 205, 42 |
| Conread position: | 56-324 |
| Cow position: | chr22:41419387-41419661 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 84 |
| Conread position: | 60-322 |
| Cow position: | chr22:1270232-1270494 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 80 |
| Conread position: | 60-324 |
| Cow position: | chr22:20240535-20240807 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 22 |
| Conread position: | 62-324 |
| Cow position: | chr22:34607357-34607092 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 153, 41 |
| Conread position: | 68-324 |
| Cow position: | chr22:36737059-36736797 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 205 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 36, 16 |
| Conread position: | 73-324 |
| Cow position: | chr22:18816096-18816351 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 52 |
| Conread position: | 75-324 |
| Cow position: | chr22:5673027-5672771 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 193 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 31, 68 |
| Conread position: | 84-320 |
| Cow position: | chr22:44475513-44475282 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 164, 57 |
| Conread position: | 96-324 |
| Cow position: | chr22:16200741-16200507 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 45 |
| Conread position: | 97-324 |
| Cow position: | chr22:36533474-36533709 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 40 |
| Conread position: | 98-324 |
| Cow position: | chr22:870601-870832 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 155, 41 |
| Conread position: | 99-324 |
| Cow position: | chr22:326906-327125 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 175 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 173, 42 |
| Conread position: | 99-324 |
| Cow position: | chr22:537365-537135 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr22:1319662-1319431 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 43 |
| Conread position: | 99-324 |
| Cow position: | chr22:1879057-1878826 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr22:3278092-3278320 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 181 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr22:5233041-5233271 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 42 |
| Conread position: | 99-324 |
| Cow position: | chr22:6020926-6020696 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 42 |
| Conread position: | 99-324 |
| Cow position: | chr22:18027543-18027314 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr22:27309509-27309739 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 42 |
| Conread position: | 99-324 |
| Cow position: | chr22:35672092-35672322 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 42 |
| Conread position: | 99-324 |
| Cow position: | chr22:46581324-46581551 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 45 |
| Conread position: | 100-324 |
| Cow position: | chr22:292907-293126 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 49, 23 |
| Conread position: | 100-324 |
| Cow position: | chr22:39881913-39882142 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 41 |
| Conread position: | 101-324 |
| Cow position: | chr22:15851583-15851364 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 5, 42 |
| Conread position: | 105-320 |
| Cow position: | chr22:525434-525657 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 105-324 |
| Cow position: | chr22:46853601-46853377 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 180 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 105-332 |
| Cow position: | chr22:42771714-42771481 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 112-246 |
| Cow position: | chr22:1860990-1860858 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 112-324 |
| Cow position: | chr22:5932749-5932963 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 176 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 112-324 |
| Cow position: | chr22:10546896-10546679 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 115-324 |
| Cow position: | chr22:35942962-35943172 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 138, 24 |
| Conread position: | 118-322 |
| Cow position: | chr22:36184001-36183794 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-322 |
| Cow position: | chr22:36861285-36861494 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 170 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-323 |
| Cow position: | chr22:34168576-34168367 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 170 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr22:17328494-17328705 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 132, 24 |
| Conread position: | 118-324 |
| Cow position: | chr22:19143454-19143665 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 118-324 |
| Cow position: | chr22:21589569-21589358 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 23 |
| Conread position: | 118-324 |
| Cow position: | chr22:31313584-31313375 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 171 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 119, 16 |
| Conread position: | 118-324 |
| Cow position: | chr22:31334793-31334999 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 170 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr22:39469278-39469489 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 169 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 125, 23 |
| Conread position: | 118-324 |
| Cow position: | chr22:42991417-42991206 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 23 |
| Conread position: | 118-324 |
| Cow position: | chr22:44934224-44934013 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 125, 23 |
| Conread position: | 118-330 |
| Cow position: | chr22:15313707-15313925 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 23 |
| Conread position: | 119-324 |
| Cow position: | chr22:693870-693660 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 22 |
| Conread position: | 119-328 |
| Cow position: | chr22:11782286-11782498 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 128, 52 |
| Conread position: | 120-323 |
| Cow position: | chr22:560462-560670 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 80, 21 |
| Conread position: | 136-324 |
| Cow position: | chr22:44396680-44396485 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 156 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 143-324 |
| Cow position: | chr22:46635492-46635675 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 105, 135 |
| Conread position: | 144-311 |
| Cow position: | chr22:8740686-8740850 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 116, 129 |
| Conread position: | 151-323 |
| Cow position: | chr22:32485139-32485317 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 103, 52 |
| Conread position: | 169-324 |
| Cow position: | chr22:36275005-36274843 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 73, 19 |
| Conread position: | 189-324 |
| Cow position: | chr22:24950006-24949864 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 58, 0 |
Show alignments to all cow chromosomes.