Cow genome map
| Conread name: | rece02_c23.y1 |
| Conread position: | 1-298 |
| Cow position: | chr28:10071383-10071089 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 44 |
| Conread position: | 1-300 |
| Cow position: | chr28:5813088-5812794 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 35 |
| Conread position: | 1-324 |
| Cow position: | chr28:21359405-21359080 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 45 |
| Conread position: | 3-157 |
| Cow position: | chr28:5764648-5764499 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 17, 11 |
| Conread position: | 3-170 |
| Cow position: | chr28:7817545-7817378 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 55, 30 |
| Conread position: | 3-324 |
| Cow position: | chr28:2989305-2989639 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 42 |
| Conread position: | 3-324 |
| Cow position: | chr28:5797835-5797511 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 45 |
| Conread position: | 3-324 |
| Cow position: | chr28:7789884-7790208 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 3-324 |
| Cow position: | chr28:21326181-21325871 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 31 |
| Conread position: | 9-211 |
| Cow position: | chr28:11357320-11357515 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 164 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 64, 29 |
| Conread position: | 14-329 |
| Cow position: | chr28:10462759-10463079 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 34 |
| Conread position: | 38-329 |
| Cow position: | chr28:2845809-2846099 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 63-324 |
| Cow position: | chr28:8721103-8721369 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 80 |
| Conread position: | 71-323 |
| Cow position: | chr28:18180820-18181070 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 125, 68 |
| Conread position: | 73-324 |
| Cow position: | chr28:7002324-7002067 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 14 |
| Conread position: | 76-323 |
| Cow position: | chr28:24667910-24667658 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 63 |
| Conread position: | 79-324 |
| Cow position: | chr28:2724564-2724812 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 190 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 166, 55 |
| Conread position: | 98-235 |
| Cow position: | chr28:24652806-24652942 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 14, 44 |
| Conread position: | 98-324 |
| Cow position: | chr28:9136742-9136972 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 146, 43 |
| Conread position: | 99-321 |
| Cow position: | chr28:485254-485481 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-322 |
| Cow position: | chr28:6780025-6780253 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr28:14750855-14750626 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 105-308 |
| Cow position: | chr28:2592218-2592009 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 105-324 |
| Cow position: | chr28:1387097-1387316 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 105-324 |
| Cow position: | chr28:4380541-4380766 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 105-324 |
| Cow position: | chr28:9154982-9155201 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 105-324 |
| Cow position: | chr28:9954436-9954211 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 105-324 |
| Cow position: | chr28:24587738-24587513 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 11, 37 |
| Conread position: | 111-276 |
| Cow position: | chr28:13490447-13490277 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 136, 30 |
| Conread position: | 111-323 |
| Cow position: | chr28:7901658-7901434 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 76, 30 |
| Conread position: | 112-324 |
| Cow position: | chr28:13440581-13440798 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 112-325 |
| Cow position: | chr28:782690-782472 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 29 |
| Conread position: | 112-329 |
| Cow position: | chr28:1167586-1167809 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 29 |
| Conread position: | 118-246 |
| Cow position: | chr28:26425962-26426088 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 118-323 |
| Cow position: | chr28:1931695-1931905 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 166 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 118-323 |
| Cow position: | chr28:5114522-5114732 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-323 |
| Cow position: | chr28:17388771-17388561 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 125, 23 |
| Conread position: | 118-324 |
| Cow position: | chr28:1814578-1814789 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 118-324 |
| Cow position: | chr28:3192502-3192713 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr28:5751416-5751628 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 23 |
| Conread position: | 118-324 |
| Cow position: | chr28:7740770-7740564 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr28:8378858-8378643 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 174 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 130, 23 |
| Conread position: | 118-324 |
| Cow position: | chr28:10581696-10581907 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 172 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 14, 24 |
| Conread position: | 118-324 |
| Cow position: | chr28:12150593-12150389 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 162 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 155, 23 |
| Conread position: | 118-324 |
| Cow position: | chr28:13460259-13460048 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 118-324 |
| Cow position: | chr28:15377703-15377913 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr28:18520170-18520385 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 170 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 116, 23 |
| Conread position: | 118-324 |
| Cow position: | chr28:32792091-32792301 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 136, 23 |
| Conread position: | 118-324 |
| Cow position: | chr28:33252601-33252392 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr28:34594268-34594057 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 125, 23 |
| Conread position: | 119-323 |
| Cow position: | chr28:2083884-2083675 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 131, 22 |
| Conread position: | 120-324 |
| Cow position: | chr28:14705384-14705593 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 168 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 127, 21 |
| Conread position: | 123-324 |
| Cow position: | chr28:29820018-29819812 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 125, 18 |
| Conread position: | 124-321 |
| Cow position: | chr28:1505135-1504933 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 165 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 126, 17 |
| Conread position: | 124-324 |
| Cow position: | chr28:17667229-17667435 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 169 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 8, 18 |
| Conread position: | 125-324 |
| Cow position: | chr28:12232719-12232920 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 127, 16 |
| Conread position: | 125-324 |
| Cow position: | chr28:17312220-17312023 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 7, 15 |
| Conread position: | 125-324 |
| Cow position: | chr28:22260868-22261072 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 166 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 125, 19 |
| Conread position: | 128-324 |
| Cow position: | chr28:5566133-5565941 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 143, 13 |
| Conread position: | 145-324 |
| Cow position: | chr28:15920200-15920387 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 148-324 |
| Cow position: | chr28:18101684-18101865 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 95, 18 |
Show alignments to all cow chromosomes.