Cow genome map
| Conread name: | rece02_c23.y1 |
| Conread position: | 3-267 |
| Cow position: | chr29:5982839-5983097 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 70, 54 |
| Conread position: | 5-253 |
| Cow position: | chr29:14086086-14086325 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 75, 40 |
| Conread position: | 15-237 |
| Cow position: | chr29:30109481-30109259 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 17-323 |
| Cow position: | chr29:104913-104612 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 27 |
| Conread position: | 17-329 |
| Cow position: | chr29:802999-803313 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 52, 23 |
| Conread position: | 36-324 |
| Cow position: | chr29:9643422-9643714 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 10, 41 |
| Conread position: | 38-324 |
| Cow position: | chr29:15949856-15950147 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 20, 68 |
| Conread position: | 38-324 |
| Cow position: | chr29:30811858-30811576 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 25, 72 |
| Conread position: | 45-283 |
| Cow position: | chr29:24708920-24709163 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 11, 97 |
| Conread position: | 73-323 |
| Cow position: | chr29:23976140-23975885 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 68 |
| Conread position: | 73-324 |
| Cow position: | chr29:410225-410481 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 68 |
| Conread position: | 73-324 |
| Cow position: | chr29:10647951-10648207 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 40, 9 |
| Conread position: | 87-318 |
| Cow position: | chr29:2750135-2750361 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 182 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 165, 53 |
| Conread position: | 98-324 |
| Cow position: | chr29:4056426-4056193 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 98, 41 |
| Conread position: | 98-324 |
| Cow position: | chr29:16770398-16770167 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 41 |
| Conread position: | 99-292 |
| Cow position: | chr29:31181689-31181492 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 161 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-323 |
| Cow position: | chr29:13582342-13582117 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 153, 46 |
| Conread position: | 99-324 |
| Cow position: | chr29:610338-610568 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr29:669783-670012 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr29:10844514-10844289 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 149, 42 |
| Conread position: | 99-324 |
| Cow position: | chr29:35297148-35296918 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 102-324 |
| Cow position: | chr29:13669024-13669245 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 30, 11 |
| Conread position: | 105-322 |
| Cow position: | chr29:19885339-19885116 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 37 |
| Conread position: | 105-323 |
| Cow position: | chr29:27040503-27040719 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 11, 37 |
| Conread position: | 105-324 |
| Cow position: | chr29:11049547-11049323 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 105-324 |
| Cow position: | chr29:21543100-21543324 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 106-309 |
| Cow position: | chr29:43365734-43365933 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 36 |
| Conread position: | 106-324 |
| Cow position: | chr29:14013731-14013509 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 143, 39 |
| Conread position: | 106-324 |
| Cow position: | chr29:14072680-14072902 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 143, 39 |
| Conread position: | 106-324 |
| Cow position: | chr29:35196931-35196711 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 137, 35 |
| Conread position: | 112-324 |
| Cow position: | chr29:7841057-7840841 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 133, 29 |
| Conread position: | 112-324 |
| Cow position: | chr29:18856683-18856900 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 29 |
| Conread position: | 112-324 |
| Cow position: | chr29:27250081-27250290 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 112-324 |
| Cow position: | chr29:27980658-27980873 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 135, 28 |
| Conread position: | 114-323 |
| Cow position: | chr29:5957862-5957649 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 136, 6 |
| Conread position: | 115-324 |
| Cow position: | chr29:15894592-15894806 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 26 |
| Conread position: | 118-320 |
| Cow position: | chr29:25932289-25932496 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-321 |
| Cow position: | chr29:20251414-20251207 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-323 |
| Cow position: | chr29:34799552-34799764 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 14, 24 |
| Conread position: | 118-323 |
| Cow position: | chr29:45587105-45587314 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr29:48225-48434 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr29:2100100-2099889 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 169 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 130, 23 |
| Conread position: | 118-324 |
| Cow position: | chr29:2690155-2689946 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr29:2841118-2841323 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 172 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 118-324 |
| Cow position: | chr29:6266246-6266457 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 118-324 |
| Cow position: | chr29:10823714-10823925 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 118-324 |
| Cow position: | chr29:19622992-19623203 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 23 |
| Conread position: | 118-324 |
| Cow position: | chr29:19653363-19653152 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 118-324 |
| Cow position: | chr29:26164567-26164778 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 169 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 118-324 |
| Cow position: | chr29:39079457-39079668 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr29:40502727-40502936 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 118-324 |
| Cow position: | chr29:43322810-43322604 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 23 |
| Conread position: | 119-324 |
| Cow position: | chr29:7430965-7431171 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 172 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 131, 22 |
| Conread position: | 119-324 |
| Cow position: | chr29:45459970-45459759 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 172 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 65, 22 |
| Conread position: | 120-324 |
| Cow position: | chr29:32540063-32539855 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 21 |
| Conread position: | 122-324 |
| Cow position: | chr29:17663157-17662948 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 124-324 |
| Cow position: | chr29:38227229-38227028 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 123, 17 |
| Conread position: | 125-331 |
| Cow position: | chr29:42650534-42650322 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 48, 16 |
| Conread position: | 125-331 |
| Cow position: | chr29:42802394-42802182 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 170 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 48, 16 |
| Conread position: | 178-324 |
| Cow position: | chr29:12796168-12796321 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 76, 0 |
Show alignments to all cow chromosomes.