Cow genome map
| Conread name: | rece02_c23.y1 |
| Conread position: | 3-324 |
| Cow position: | chr5:46659899-46659576 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 15 |
| Conread position: | 4-324 |
| Cow position: | chr5:46630268-46630580 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 10 |
| Conread position: | 5-255 |
| Cow position: | chr5:27058939-27059188 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 29 |
| Conread position: | 5-255 |
| Cow position: | chr5:27059842-27060091 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 29 |
| Conread position: | 5-324 |
| Cow position: | chr5:49593273-49593594 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 29 |
| Conread position: | 5-325 |
| Cow position: | chr5:23755453-23755761 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 72, 28 |
| Conread position: | 15-294 |
| Cow position: | chr5:51163075-51162791 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 10, 50 |
| Conread position: | 17-270 |
| Cow position: | chr5:27682568-27682828 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 39, 19 |
| Conread position: | 17-311 |
| Cow position: | chr5:27489418-27489121 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 19 |
| Conread position: | 17-320 |
| Cow position: | chr5:49129389-49129086 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 59, 30 |
| Conread position: | 17-322 |
| Cow position: | chr5:52434137-52433834 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 41, 28 |
| Conread position: | 17-330 |
| Cow position: | chr5:25000480-25000789 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 24-324 |
| Cow position: | chr5:26068565-26068856 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 44, 24 |
| Conread position: | 25-318 |
| Cow position: | chr5:41529428-41529724 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 20 |
| Conread position: | 29-323 |
| Cow position: | chr5:51771135-51771436 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 26, 15 |
| Conread position: | 36-324 |
| Cow position: | chr5:28023308-28023017 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 14 |
| Conread position: | 38-213 |
| Cow position: | chr5:7502757-7502931 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 106 |
| Conread position: | 42-251 |
| Cow position: | chr5:23228379-23228173 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 14, 101 |
| Conread position: | 42-329 |
| Cow position: | chr5:14658952-14659238 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 13, 56 |
| Conread position: | 44-246 |
| Cow position: | chr5:16103502-16103701 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 11, 55 |
| Conread position: | 44-324 |
| Cow position: | chr5:29435809-29436108 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 12, 109 |
| Conread position: | 44-329 |
| Cow position: | chr5:31202479-31202767 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 12, 99 |
| Conread position: | 60-324 |
| Cow position: | chr5:3964586-3964325 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 35, 23 |
| Conread position: | 77-324 |
| Cow position: | chr5:26769917-26769671 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 171, 64 |
| Conread position: | 82-324 |
| Cow position: | chr5:32673634-32673882 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 20 |
| Conread position: | 84-324 |
| Cow position: | chr5:41962132-41962377 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 57 |
| Conread position: | 97-324 |
| Cow position: | chr5:26079123-26079357 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 46 |
| Conread position: | 99-324 |
| Cow position: | chr5:2531362-2531132 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr5:6588929-6589160 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 42 |
| Conread position: | 99-324 |
| Cow position: | chr5:27909181-27909411 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr5:28031568-28031338 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 149, 42 |
| Conread position: | 99-324 |
| Cow position: | chr5:31706665-31706437 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr5:32733160-32733391 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 13, 43 |
| Conread position: | 99-324 |
| Cow position: | chr5:32772573-32772343 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr5:32945966-32945735 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 43 |
| Conread position: | 99-324 |
| Cow position: | chr5:45182012-45182242 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr5:58196093-58195863 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 100-324 |
| Cow position: | chr5:27651892-27652122 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 180 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 150, 41 |
| Conread position: | 100-324 |
| Cow position: | chr5:46644779-46644548 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 6, 47 |
| Conread position: | 105-298 |
| Cow position: | chr5:27570197-27570000 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 145, 36 |
| Conread position: | 105-324 |
| Cow position: | chr5:9686341-9686567 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 180 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 105-324 |
| Cow position: | chr5:20971960-20972171 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 7, 40 |
| Conread position: | 105-324 |
| Cow position: | chr5:45700352-45700127 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 105-324 |
| Cow position: | chr5:49182355-49182130 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 112-321 |
| Cow position: | chr5:3785863-3785654 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 138, 29 |
| Conread position: | 112-323 |
| Cow position: | chr5:46664081-46663865 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 138, 29 |
| Conread position: | 112-324 |
| Cow position: | chr5:10776186-10776403 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 29 |
| Conread position: | 112-324 |
| Cow position: | chr5:12643853-12644077 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 27, 76 |
| Conread position: | 112-324 |
| Cow position: | chr5:14380240-14380024 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 175 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 138, 29 |
| Conread position: | 112-324 |
| Cow position: | chr5:29042589-29042373 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 33 |
| Conread position: | 112-324 |
| Cow position: | chr5:44459561-44459344 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 115-324 |
| Cow position: | chr5:54932143-54932357 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 26 |
| Conread position: | 116-309 |
| Cow position: | chr5:24108521-24108714 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 136, 23 |
| Conread position: | 116-322 |
| Cow position: | chr5:57977332-57977122 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 132, 25 |
| Conread position: | 118-323 |
| Cow position: | chr5:4069060-4068852 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 128, 23 |
| Conread position: | 118-323 |
| Cow position: | chr5:55628058-55627850 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-323 |
| Cow position: | chr5:76123509-76123712 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 125, 23 |
| Conread position: | 118-324 |
| Cow position: | chr5:415650-415861 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr5:2430060-2430271 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr5:2914520-2914312 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 134, 26 |
| Conread position: | 118-324 |
| Cow position: | chr5:24098721-24098510 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr5:46738513-46738724 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 23 |
| Conread position: | 118-324 |
| Cow position: | chr5:48808643-48808854 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 130, 24 |
| Conread position: | 118-324 |
| Cow position: | chr5:49119209-49119420 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 127, 23 |
| Conread position: | 118-324 |
| Cow position: | chr5:49518730-49518521 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 118-324 |
| Cow position: | chr5:57482474-57482685 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 118-324 |
| Cow position: | chr5:64781946-64782157 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 118-324 |
| Cow position: | chr5:73489489-73489700 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 120-324 |
| Cow position: | chr5:37732416-37732207 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 21 |
| Conread position: | 123-323 |
| Cow position: | chr5:26089765-26089969 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 129, 9 |
| Conread position: | 123-324 |
| Cow position: | chr5:24330341-24330135 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 124-324 |
| Cow position: | chr5:30579388-30579183 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 165 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 123, 17 |
| Conread position: | 125-282 |
| Cow position: | chr5:54792570-54792730 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 123, 16 |
| Conread position: | 127-324 |
| Cow position: | chr5:10918861-10918659 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 120, 14 |
| Conread position: | 136-324 |
| Cow position: | chr5:31101554-31101736 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 6, 103 |
| Conread position: | 141-329 |
| Cow position: | chr5:61019798-61019988 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 109, 100 |
| Conread position: | 142-323 |
| Cow position: | chr5:3504200-3504388 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 153 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 143-324 |
| Cow position: | chr5:61273138-61273321 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 127, 105 |
| Conread position: | 146-321 |
| Cow position: | chr5:6158152-6158332 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 106, 43 |
| Conread position: | 146-324 |
| Cow position: | chr5:17773994-17774179 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 153 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 149-324 |
| Cow position: | chr5:1341755-1341932 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 90, 51 |
| Conread position: | 155-324 |
| Cow position: | chr5:5786570-5786746 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 184-324 |
| Cow position: | chr5:58819626-58819773 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 189-324 |
| Cow position: | chr5:18654048-18653906 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 194-324 |
| Cow position: | chr5:5317759-5317896 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
Show alignments to all cow chromosomes.