Cow genome map
| Conread name: | rece02_c23.y1 |
| Conread position: | 1-324 |
| Cow position: | chr6:37116462-37116143 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 16 |
| Conread position: | 2-270 |
| Cow position: | chr6:43608034-43608295 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 32 |
| Conread position: | 4-246 |
| Cow position: | chr6:10641485-10641248 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 31 |
| Conread position: | 4-324 |
| Cow position: | chr6:6476165-6476479 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 42 |
| Conread position: | 5-324 |
| Cow position: | chr6:35420286-35420592 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 43 |
| Conread position: | 5-324 |
| Cow position: | chr6:38232601-38232284 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 31 |
| Conread position: | 17-311 |
| Cow position: | chr6:1383568-1383849 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 39, 27 |
| Conread position: | 19-241 |
| Cow position: | chr6:52805335-52805124 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 150, 29 |
| Conread position: | 25-323 |
| Cow position: | chr6:65928247-65927941 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 20 |
| Conread position: | 30-325 |
| Cow position: | chr6:32330492-32330789 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 33 |
| Conread position: | 44-309 |
| Cow position: | chr6:7179404-7179677 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 12, 100 |
| Conread position: | 69-323 |
| Cow position: | chr6:30479362-30479099 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 72 |
| Conread position: | 73-324 |
| Cow position: | chr6:20560853-20561109 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 177, 68 |
| Conread position: | 73-324 |
| Cow position: | chr6:27529748-27530000 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 177, 68 |
| Conread position: | 73-324 |
| Cow position: | chr6:29311750-29311494 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 189 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 177, 68 |
| Conread position: | 78-324 |
| Cow position: | chr6:44150303-44150553 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 26 |
| Conread position: | 91-324 |
| Cow position: | chr6:3488159-3488397 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 186 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 157, 6 |
| Conread position: | 97-323 |
| Cow position: | chr6:10558424-10558656 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 15, 45 |
| Conread position: | 97-324 |
| Cow position: | chr6:13944146-13943911 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 46 |
| Conread position: | 97-324 |
| Cow position: | chr6:40251902-40251666 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 48 |
| Conread position: | 98-320 |
| Cow position: | chr6:59919051-59919271 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 175, 43 |
| Conread position: | 98-324 |
| Cow position: | chr6:16052114-16051883 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 43 |
| Conread position: | 99-323 |
| Cow position: | chr6:28491281-28491509 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr6:331236-331465 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr6:1405005-1405235 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr6:1411707-1411937 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr6:2374933-2374703 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 46 |
| Conread position: | 99-324 |
| Cow position: | chr6:2554939-2554709 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr6:3149237-3149007 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr6:13847265-13847038 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 151, 42 |
| Conread position: | 99-324 |
| Cow position: | chr6:27169814-27169580 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 42 |
| Conread position: | 99-324 |
| Cow position: | chr6:43617948-43617719 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 42 |
| Conread position: | 99-324 |
| Cow position: | chr6:44029272-44029046 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr6:68027025-68026795 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-325 |
| Cow position: | chr6:17598046-17598277 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 42 |
| Conread position: | 101-324 |
| Cow position: | chr6:35433761-35433537 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 79, 37 |
| Conread position: | 102-320 |
| Cow position: | chr6:13317270-13317482 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 146, 13 |
| Conread position: | 102-324 |
| Cow position: | chr6:526464-526241 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 142, 23 |
| Conread position: | 104-338 |
| Cow position: | chr6:19454143-19453903 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 188 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 144, 37 |
| Conread position: | 105-229 |
| Cow position: | chr6:12650721-12650844 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 109-317 |
| Cow position: | chr6:41553234-41553027 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 7, 34 |
| Conread position: | 112-324 |
| Cow position: | chr6:7866531-7866748 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 112-324 |
| Cow position: | chr6:13104278-13104061 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 112-324 |
| Cow position: | chr6:33460083-33459866 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 173 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 136, 29 |
| Conread position: | 112-324 |
| Cow position: | chr6:58408692-58408909 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 112-331 |
| Cow position: | chr6:65841804-65841580 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 29 |
| Conread position: | 115-323 |
| Cow position: | chr6:13277017-13276806 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 135, 26 |
| Conread position: | 115-324 |
| Cow position: | chr6:65821909-65822123 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 26 |
| Conread position: | 118-320 |
| Cow position: | chr6:65881081-65880874 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 168 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-323 |
| Cow position: | chr6:36526260-36526047 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 112, 23 |
| Conread position: | 118-324 |
| Cow position: | chr6:702164-701958 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 124, 23 |
| Conread position: | 118-324 |
| Cow position: | chr6:1822426-1822617 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 118-324 |
| Cow position: | chr6:6566819-6566608 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr6:8201951-8201734 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 118-324 |
| Cow position: | chr6:8761091-8761301 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 169 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 113, 23 |
| Conread position: | 118-324 |
| Cow position: | chr6:15140966-15141179 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr6:15280338-15280549 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr6:17046269-17046062 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr6:24239279-24239068 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 118-324 |
| Cow position: | chr6:30274965-30275175 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr6:34892792-34893007 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr6:35876504-35876715 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 130, 23 |
| Conread position: | 118-324 |
| Cow position: | chr6:43793540-43793767 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 54, 23 |
| Conread position: | 118-324 |
| Cow position: | chr6:47042985-47043201 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 176 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 120, 23 |
| Conread position: | 118-324 |
| Cow position: | chr6:55544113-55544324 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr6:64715443-64715233 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 134, 23 |
| Conread position: | 121-324 |
| Cow position: | chr6:25214469-25214261 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 165 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 127, 20 |
| Conread position: | 122-324 |
| Cow position: | chr6:3889269-3889476 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 167 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 130, 19 |
| Conread position: | 123-324 |
| Cow position: | chr6:3277741-3277947 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 18 |
| Conread position: | 124-324 |
| Cow position: | chr6:27469456-27469255 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 166 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 126, 17 |
| Conread position: | 130-241 |
| Cow position: | chr6:9738904-9738793 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 131-324 |
| Cow position: | chr6:28275183-28274985 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 118, 10 |
| Conread position: | 146-324 |
| Cow position: | chr6:28474890-28474705 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 100, 125 |
| Conread position: | 154-324 |
| Cow position: | chr6:913822-913644 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 160-323 |
| Cow position: | chr6:21971860-21971690 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 178-324 |
| Cow position: | chr6:57869847-57870000 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 69, 0 |
Show alignments to all cow chromosomes.