Cow genome map
| Conread name: | rece02_c23.y1 |
| Conread position: | 3-322 |
| Cow position: | chr7:51014355-51014050 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 11 |
| Conread position: | 3-324 |
| Cow position: | chr7:3155193-3154858 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 66, 12 |
| Conread position: | 3-324 |
| Cow position: | chr7:24934552-24934873 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 42 |
| Conread position: | 3-324 |
| Cow position: | chr7:29470535-29470216 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 50 |
| Conread position: | 3-324 |
| Cow position: | chr7:68777744-68778061 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 43 |
| Conread position: | 5-321 |
| Cow position: | chr7:55280390-55280706 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 61, 43 |
| Conread position: | 5-324 |
| Cow position: | chr7:1399949-1400267 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 31 |
| Conread position: | 5-324 |
| Cow position: | chr7:6488923-6489227 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 51, 28 |
| Conread position: | 5-324 |
| Cow position: | chr7:47051098-47050781 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 44 |
| Conread position: | 5-324 |
| Cow position: | chr7:63021254-63020941 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 29 |
| Conread position: | 7-255 |
| Cow position: | chr7:54195839-54196086 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 136 |
| Conread position: | 9-320 |
| Cow position: | chr7:35287146-35287463 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 24 |
| Conread position: | 13-324 |
| Cow position: | chr7:58993596-58993292 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 60, 35 |
| Conread position: | 23-324 |
| Cow position: | chr7:68478840-68478536 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 5, 54 |
| Conread position: | 24-298 |
| Cow position: | chr7:27126552-27126278 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 50, 28 |
| Conread position: | 24-316 |
| Cow position: | chr7:27539970-27540264 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 33, 12 |
| Conread position: | 24-329 |
| Cow position: | chr7:3730370-3730067 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 52, 24 |
| Conread position: | 31-324 |
| Cow position: | chr7:21310598-21310302 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 109 |
| Conread position: | 37-323 |
| Cow position: | chr7:49291048-49290755 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 106 |
| Conread position: | 40-324 |
| Cow position: | chr7:39107856-39108146 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 102 |
| Conread position: | 42-269 |
| Cow position: | chr7:53991132-53990901 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 98 |
| Conread position: | 44-338 |
| Cow position: | chr7:58377836-58378132 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 12, 66 |
| Conread position: | 50-317 |
| Cow position: | chr7:52804346-52804611 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 52-324 |
| Cow position: | chr7:36085700-36085429 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 34, 88 |
| Conread position: | 54-320 |
| Cow position: | chr7:63550333-63550593 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 85 |
| Conread position: | 60-322 |
| Cow position: | chr7:68479532-68479262 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 84 |
| Conread position: | 63-324 |
| Cow position: | chr7:68857754-68858022 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 77 |
| Conread position: | 69-317 |
| Cow position: | chr7:23836464-23836219 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 174, 6 |
| Conread position: | 76-324 |
| Cow position: | chr7:1610865-1611118 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 63 |
| Conread position: | 86-324 |
| Cow position: | chr7:68908163-68907923 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 55 |
| Conread position: | 93-324 |
| Cow position: | chr7:27101784-27102021 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 157, 11 |
| Conread position: | 99-324 |
| Cow position: | chr7:3300833-3301061 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 42 |
| Conread position: | 99-324 |
| Cow position: | chr7:6648333-6648562 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 29 |
| Conread position: | 99-324 |
| Cow position: | chr7:11446879-11446648 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 42 |
| Conread position: | 99-324 |
| Cow position: | chr7:20515449-20515679 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr7:20528352-20528582 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr7:25439833-25439599 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 64, 45 |
| Conread position: | 101-318 |
| Cow position: | chr7:27584789-27585009 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 152, 38 |
| Conread position: | 104-324 |
| Cow position: | chr7:5183723-5183498 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 37 |
| Conread position: | 104-329 |
| Cow position: | chr7:63385658-63385427 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 143, 38 |
| Conread position: | 105-324 |
| Cow position: | chr7:1449800-1449577 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 145, 36 |
| Conread position: | 105-324 |
| Cow position: | chr7:5662691-5662467 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 177 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 12, 37 |
| Conread position: | 105-324 |
| Cow position: | chr7:35296952-35297178 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 38 |
| Conread position: | 105-324 |
| Cow position: | chr7:41490427-41490204 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 105-324 |
| Cow position: | chr7:61559531-61559306 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 105-329 |
| Cow position: | chr7:21975429-21975649 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 111-318 |
| Cow position: | chr7:48633690-48633484 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 15, 31 |
| Conread position: | 111-324 |
| Cow position: | chr7:45948842-45949057 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 177 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 139, 5 |
| Conread position: | 111-324 |
| Cow position: | chr7:68232251-68232033 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 137, 30 |
| Conread position: | 112-324 |
| Cow position: | chr7:16562-16779 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 112-324 |
| Cow position: | chr7:21320466-21320249 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 112-324 |
| Cow position: | chr7:23815660-23815877 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 112-324 |
| Cow position: | chr7:43830715-43830932 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 112-324 |
| Cow position: | chr7:60463459-60463242 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 115-324 |
| Cow position: | chr7:994537-994328 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 131, 27 |
| Conread position: | 116-323 |
| Cow position: | chr7:7257499-7257289 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 131, 25 |
| Conread position: | 116-324 |
| Cow position: | chr7:20799140-20799349 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 174 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 131, 25 |
| Conread position: | 117-324 |
| Cow position: | chr7:20556019-20555807 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 24 |
| Conread position: | 118-314 |
| Cow position: | chr7:34149402-34149201 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 164 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-314 |
| Cow position: | chr7:34486218-34486016 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 166 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 95, 23 |
| Conread position: | 118-324 |
| Cow position: | chr7:446327-446538 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr7:1372348-1372559 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 23 |
| Conread position: | 118-324 |
| Cow position: | chr7:8144940-8145151 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr7:10431114-10431325 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 118-324 |
| Cow position: | chr7:14139297-14139508 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr7:19924523-19924730 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr7:21127359-21127569 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr7:21234708-21234918 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 55, 23 |
| Conread position: | 118-324 |
| Cow position: | chr7:21985703-21985492 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr7:24808163-24808374 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr7:46901777-46901987 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr7:64241644-64241855 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-325 |
| Cow position: | chr7:13537280-13537491 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 130, 23 |
| Conread position: | 119-324 |
| Cow position: | chr7:39792058-39791848 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 22 |
| Conread position: | 120-314 |
| Cow position: | chr7:67799153-67798954 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 162 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 127, 21 |
| Conread position: | 120-324 |
| Cow position: | chr7:1357384-1357593 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 167 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 128, 21 |
| Conread position: | 120-324 |
| Cow position: | chr7:55537616-55537824 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 170 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 130, 21 |
| Conread position: | 121-324 |
| Cow position: | chr7:54603152-54602944 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 129, 20 |
| Conread position: | 122-323 |
| Cow position: | chr7:27786921-27786717 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 128, 19 |
| Conread position: | 131-324 |
| Cow position: | chr7:33878080-33878273 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 125, 10 |
| Conread position: | 143-324 |
| Cow position: | chr7:41869664-41869853 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 153 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 161-323 |
| Cow position: | chr7:26891070-26890900 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 163-327 |
| Cow position: | chr7:38536768-38536599 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 172-324 |
| Cow position: | chr7:26026287-26026132 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 78, 0 |
Show alignments to all cow chromosomes.