Cow genome map
| Conread name: | rece02_c23.y1 |
| Conread position: | 3-149 |
| Cow position: | chr9:44794713-44794577 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 52, 31 |
| Conread position: | 3-324 |
| Cow position: | chr9:13476966-13477286 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 32 |
| Conread position: | 4-301 |
| Cow position: | chr9:44818114-44817814 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 41 |
| Conread position: | 5-190 |
| Cow position: | chr9:13222581-13222406 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 53, 10 |
| Conread position: | 5-293 |
| Cow position: | chr9:20309282-20309568 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 53, 40 |
| Conread position: | 17-321 |
| Cow position: | chr9:39993154-39992854 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 233, 31 |
| Conread position: | 29-324 |
| Cow position: | chr9:64119052-64118757 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 222 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 29, 111 |
| Conread position: | 33-324 |
| Cow position: | chr9:1635770-1635486 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 212 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 23, 102 |
| Conread position: | 33-324 |
| Cow position: | chr9:3355762-3356061 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 110 |
| Conread position: | 36-327 |
| Cow position: | chr9:59536319-59536023 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 10, 38 |
| Conread position: | 38-236 |
| Cow position: | chr9:3803266-3803069 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 18, 101 |
| Conread position: | 61-324 |
| Cow position: | chr9:64159319-64159047 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 20, 81 |
| Conread position: | 62-323 |
| Cow position: | chr9:3393793-3394051 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 112, 42 |
| Conread position: | 63-324 |
| Cow position: | chr9:3726479-3726210 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 60, 181 |
| Conread position: | 75-323 |
| Cow position: | chr9:18837196-18836944 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 125, 12 |
| Conread position: | 76-329 |
| Cow position: | chr9:5423999-5424259 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 172, 65 |
| Conread position: | 77-322 |
| Cow position: | chr9:1980162-1979913 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 173, 14 |
| Conread position: | 84-324 |
| Cow position: | chr9:37095372-37095127 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 157, 55 |
| Conread position: | 85-325 |
| Cow position: | chr9:35658121-35657883 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 122, 44 |
| Conread position: | 91-310 |
| Cow position: | chr9:12845381-12845605 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 157, 118 |
| Conread position: | 97-324 |
| Cow position: | chr9:34242431-34242663 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 46 |
| Conread position: | 97-324 |
| Cow position: | chr9:36724668-36724435 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 46 |
| Conread position: | 97-324 |
| Cow position: | chr9:51182030-51182262 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 44 |
| Conread position: | 99-324 |
| Cow position: | chr9:780642-780872 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr9:1076035-1076266 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr9:3006083-3006313 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 47 |
| Conread position: | 99-324 |
| Cow position: | chr9:25755061-25755291 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 42 |
| Conread position: | 99-324 |
| Cow position: | chr9:31194004-31194234 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 99-324 |
| Cow position: | chr9:54361593-54361368 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 144, 33 |
| Conread position: | 99-327 |
| Cow position: | chr9:3586531-3586300 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 185 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 13, 43 |
| Conread position: | 100-323 |
| Cow position: | chr9:45873512-45873282 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 43 |
| Conread position: | 100-324 |
| Cow position: | chr9:9013269-9013038 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 19, 42 |
| Conread position: | 100-324 |
| Cow position: | chr9:25484036-25483806 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 43 |
| Conread position: | 100-324 |
| Cow position: | chr9:34992554-34992325 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 41 |
| Conread position: | 100-324 |
| Cow position: | chr9:64018298-64018527 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 41 |
| Conread position: | 101-323 |
| Cow position: | chr9:3548013-3548238 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 31 |
| Conread position: | 101-324 |
| Cow position: | chr9:15072674-15072447 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 149, 40 |
| Conread position: | 104-324 |
| Cow position: | chr9:37129388-37129605 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 175 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 131, 37 |
| Conread position: | 105-318 |
| Cow position: | chr9:37063646-37063858 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 105-322 |
| Cow position: | chr9:16268528-16268306 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 36 |
| Conread position: | 105-323 |
| Cow position: | chr9:3542964-3542740 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 105-324 |
| Cow position: | chr9:3156180-3155960 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 105-324 |
| Cow position: | chr9:10315524-10315298 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 13, 37 |
| Conread position: | 105-324 |
| Cow position: | chr9:28625884-28626108 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 177 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 105-324 |
| Cow position: | chr9:59444007-59443782 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 112-324 |
| Cow position: | chr9:163354-163571 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 112-324 |
| Cow position: | chr9:9054916-9055133 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 112-324 |
| Cow position: | chr9:27934238-27934027 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 173 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 135, 24 |
| Conread position: | 112-324 |
| Cow position: | chr9:40191527-40191744 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 112-324 |
| Cow position: | chr9:50789826-50789610 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 29 |
| Conread position: | 115-324 |
| Cow position: | chr9:30826828-30826614 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 26 |
| Conread position: | 116-322 |
| Cow position: | chr9:42569016-42568806 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 171 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 131, 7 |
| Conread position: | 118-251 |
| Cow position: | chr9:7002664-7002534 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 118-311 |
| Cow position: | chr9:10321951-10321755 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr9:3566709-3566920 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr9:4532634-4532423 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr9:6050905-6051117 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 75, 23 |
| Conread position: | 118-324 |
| Cow position: | chr9:7061949-7062160 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr9:16175910-16175700 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr9:25023158-25023369 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 118-324 |
| Cow position: | chr9:29628604-29628814 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 120, 23 |
| Conread position: | 118-324 |
| Cow position: | chr9:30672511-30672300 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr9:31807676-31807466 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr9:32969110-32968900 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr9:47002332-47002122 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 169 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 118-324 |
| Cow position: | chr9:59455455-59455667 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 129, 18 |
| Conread position: | 118-324 |
| Cow position: | chr9:59482529-59482741 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 118-324 |
| Cow position: | chr9:60277879-60278089 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 170 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 119-324 |
| Cow position: | chr9:37971068-37971278 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 167 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 119, 22 |
| Conread position: | 119-324 |
| Cow position: | chr9:42309825-42309615 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 128, 22 |
| Conread position: | 122-324 |
| Cow position: | chr9:1995774-1995980 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 166 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 125, 19 |
| Conread position: | 122-324 |
| Cow position: | chr9:2171198-2170991 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 163 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 113, 14 |
| Conread position: | 122-324 |
| Cow position: | chr9:4984911-4984700 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 125-323 |
| Cow position: | chr9:27034836-27034634 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 166 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 118, 16 |
| Conread position: | 144-324 |
| Cow position: | chr9:18067100-18067287 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 152 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 154-324 |
| Cow position: | chr9:2001298-2001477 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 160-324 |
| Cow position: | chr9:28021654-28021481 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 170-323 |
| Cow position: | chr9:4672700-4672541 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 77, 24 |
| Conread position: | 184-324 |
| Cow position: | chr9:34720052-34719902 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 64, 0 |
Show alignments to all cow chromosomes.